Wall clock time and date at job start Tue Mar 31 2020 15:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30362 * 126.00314 * 2 1 4 4 N 1.39898 * 109.03547 * 179.97438 * 3 2 1 5 5 C 1.46505 * 125.70389 * 180.02562 * 4 3 2 6 6 C 1.34149 * 108.59668 * 359.74340 * 4 3 2 7 7 C 1.50699 * 126.32958 * 180.26704 * 6 4 3 8 8 C 1.38583 * 107.34061 * 0.39801 * 6 4 3 9 9 C 1.46970 * 126.48382 * 179.86806 * 8 6 4 10 10 O 1.21445 * 120.00312 * 94.65846 * 9 8 6 11 11 C 1.49096 * 120.00091 * 274.65392 * 9 8 6 12 12 O 1.21421 * 119.99941 * 5.02114 * 11 9 8 13 13 N 1.34774 * 120.00362 * 185.01736 * 11 9 8 14 14 C 1.38792 * 120.00019 * 184.38196 * 13 11 9 15 15 C 1.38757 * 120.29748 * 325.31213 * 14 13 11 16 16 C 1.38158 * 120.02260 * 180.25104 * 15 14 13 17 17 C 1.38911 * 120.63747 * 359.74640 * 16 15 14 18 18 C 1.36422 * 120.60357 * 359.97438 * 17 16 15 19 19 C 1.40774 * 119.94813 * 0.02562 * 18 17 16 20 20 C 1.40953 * 120.31579 * 179.97438 * 19 18 17 21 21 H 1.08001 * 120.00472 * 154.82642 * 20 19 18 22 22 C 1.40069 * 119.99548 * 334.82904 * 20 19 18 23 23 N 1.30786 * 120.00075 * 334.82682 * 22 20 19 24 24 Si 1.86801 * 119.99792 * 154.82192 * 22 20 19 25 25 H 1.48503 * 109.46723 * 180.02562 * 24 22 20 26 26 H 1.48502 * 109.47250 * 299.99830 * 24 22 20 27 27 H 1.48500 * 109.47098 * 60.00095 * 24 22 20 28 28 H 1.09000 * 109.47358 * 275.03470 * 1 2 3 29 29 H 1.09011 * 109.47168 * 35.02730 * 1 2 3 30 30 H 1.09000 * 109.47420 * 155.02969 * 1 2 3 31 31 H 1.08996 * 109.46867 * 89.97261 * 5 4 3 32 32 H 1.08997 * 109.46969 * 209.97341 * 5 4 3 33 33 H 1.09003 * 109.46828 * 329.97276 * 5 4 3 34 34 H 1.09007 * 109.46929 * 270.15645 * 7 6 4 35 35 H 1.09000 * 109.47095 * 30.15334 * 7 6 4 36 36 H 1.08997 * 109.46985 * 150.15876 * 7 6 4 37 37 H 0.97003 * 119.99846 * 4.38699 * 13 11 9 38 38 H 1.07998 * 119.99188 * 359.97438 * 15 14 13 39 39 H 1.08004 * 119.67438 * 179.76082 * 16 15 14 40 40 H 1.08006 * 119.70217 * 180.02562 * 17 16 15 41 41 H 1.08005 * 120.02384 * 180.02562 * 18 17 16 42 42 H 0.97002 * 120.00082 * 354.63205 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2733 1.0546 0.0000 4 7 3.6114 0.6463 0.0006 5 6 4.7763 1.5347 0.0013 6 6 3.6495 -0.6946 0.0067 7 6 4.8885 -1.5525 0.0150 8 6 2.3390 -1.1451 0.0007 9 6 1.8967 -2.5467 0.0015 10 8 1.6270 -3.0978 1.0495 11 6 1.7790 -3.2919 -1.2845 12 8 2.1348 -2.7718 -2.3224 13 7 1.2778 -4.5430 -1.2950 14 6 1.2524 -5.2705 -2.4767 15 6 1.0331 -4.6305 -3.6881 16 6 1.0037 -5.3609 -4.8605 17 6 1.1974 -6.7364 -4.8426 18 6 1.4206 -7.3910 -3.6667 19 6 1.4557 -6.6714 -2.4573 20 6 1.6852 -7.3401 -1.2379 21 1 2.1086 -6.8057 -0.4003 22 6 1.3643 -8.6977 -1.1125 23 7 0.4432 -9.2252 -1.8767 24 14 2.2518 -9.7549 0.1461 25 1 1.7329 -11.1447 0.0792 26 1 3.7077 -9.7560 -0.1468 27 1 2.0209 -9.2045 1.5059 28 1 -0.3634 0.0902 1.0237 29 1 -0.3634 0.8416 -0.5899 30 1 -0.3634 -0.9316 -0.4338 31 1 5.0644 1.7552 1.0291 32 1 5.6053 1.0472 -0.5118 33 1 4.5259 2.4626 -0.5129 34 1 5.1926 -1.7615 -1.0107 35 1 5.6911 -1.0265 0.5319 36 1 4.6778 -2.4899 0.5298 37 1 0.9348 -4.9349 -0.4766 38 1 0.8809 -3.5616 -3.7142 39 1 0.8288 -4.8575 -5.7999 40 1 1.1718 -7.2925 -5.7681 41 1 1.5704 -8.4607 -3.6637 42 1 -0.0718 -8.6617 -2.4751 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339168352.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:00 Heat of formation + Delta-G solvation = 24.367930 kcal Electronic energy + Delta-G solvation = -27292.193883 eV Core-core repulsion = 23431.875831 eV Total energy + Delta-G solvation = -3860.318053 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.56044 -40.00600 -38.43973 -37.22666 -34.45706 -34.07768 -33.85120 -32.22458 -29.74017 -29.43028 -28.91192 -27.99597 -26.11679 -25.31860 -24.39343 -21.93884 -21.14350 -20.21445 -19.65041 -19.03846 -18.12058 -17.45224 -16.82671 -16.19823 -15.86767 -15.43464 -15.10167 -14.71905 -14.38319 -14.18584 -14.05235 -13.72264 -13.66830 -13.40259 -13.32714 -13.00915 -12.83686 -12.76194 -12.59784 -12.33652 -12.12428 -12.08216 -12.05569 -11.51729 -11.27222 -11.06791 -10.77307 -10.66445 -10.45381 -10.26454 -9.75625 -9.36563 -9.26453 -9.07481 -8.88293 -8.52898 -7.68623 -7.45594 -7.04406 -4.53727 1.14365 1.60628 2.21672 2.39068 2.61172 2.76718 3.11562 3.22202 3.31347 3.38559 3.54475 3.94116 4.25090 4.35389 4.49014 4.66261 4.84308 4.85074 4.91211 5.09811 5.14182 5.23667 5.29783 5.40023 5.51548 5.61722 5.63480 5.75936 5.89199 6.15510 6.25798 6.41178 6.42442 6.70343 6.75514 6.87615 7.03466 7.06178 7.32322 7.46575 7.53949 7.64538 7.70540 7.85493 7.95098 8.14364 8.23309 8.55511 8.67944 8.81356 9.93819 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.014838 B = 0.003508 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.541548 B = 7979.039424 C = 8755.838564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.122 3.878 3 N -0.300 5.300 4 N -0.362 5.362 5 C 0.099 3.901 6 C 0.138 3.862 7 C -0.101 4.101 8 C -0.295 4.295 9 C 0.439 3.561 10 O -0.416 6.416 11 C 0.457 3.543 12 O -0.506 6.506 13 N -0.603 5.603 14 C -0.008 4.008 15 C -0.066 4.066 16 C -0.243 4.243 17 C -0.087 4.087 18 C -0.208 4.208 19 C 0.095 3.905 20 C -0.521 4.521 21 H 0.077 0.923 22 C 0.042 3.958 23 N -0.789 5.789 24 Si 1.063 2.937 25 H -0.273 1.273 26 H -0.274 1.274 27 H -0.274 1.274 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.411 0.589 38 H 0.111 0.889 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.110 0.890 42 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.858 13.918 5.343 16.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.045 4.045 3 N -0.121 5.121 4 N -0.141 5.141 5 C -0.042 4.042 6 C 0.008 3.992 7 C -0.159 4.159 8 C -0.308 4.308 9 C 0.307 3.693 10 O -0.285 6.285 11 C 0.241 3.759 12 O -0.384 6.384 13 N -0.247 5.247 14 C -0.101 4.101 15 C -0.086 4.086 16 C -0.263 4.263 17 C -0.106 4.106 18 C -0.228 4.228 19 C 0.091 3.909 20 C -0.549 4.549 21 H 0.095 0.905 22 C -0.181 4.181 23 N -0.411 5.411 24 Si 0.887 3.113 25 H -0.198 1.198 26 H -0.199 1.199 27 H -0.199 1.199 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.247 0.753 38 H 0.129 0.871 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.128 0.872 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.218 13.804 5.768 16.201 hybrid contribution -0.140 0.627 -0.373 0.743 sum 6.077 14.431 5.395 16.562 Atomic orbital electron populations 1.20271 0.86075 1.03845 1.03426 1.22230 0.96692 0.88553 0.97002 1.76991 0.85855 1.22296 1.26981 1.48029 1.05865 1.03956 1.56293 1.21919 0.84252 0.94523 1.03538 1.21353 0.95797 0.84592 0.97487 1.20605 0.92151 0.98662 1.04496 1.19927 0.92627 0.94163 1.24115 1.21862 0.72764 0.86230 0.88421 1.90585 1.34036 1.68953 1.34928 1.20614 0.81260 0.83633 0.90418 1.90704 1.47846 1.67365 1.32439 1.42710 1.56412 1.13221 1.12349 1.17576 1.16412 0.91613 0.84540 1.20699 0.97722 0.98675 0.91509 1.20245 1.15753 0.93894 0.96391 1.20420 0.99250 0.94206 0.96718 1.20763 1.10920 0.99414 0.91715 1.17474 0.90128 0.89676 0.93655 1.20421 1.38607 0.97206 0.98648 0.90510 1.27028 0.94839 0.96726 0.99556 1.70449 1.12284 1.41922 1.16494 0.83652 0.76569 0.76104 0.75010 1.19757 1.19948 1.19943 0.89896 0.90074 0.90483 0.90502 0.89196 0.88876 0.88838 0.90354 0.89395 0.75263 0.87076 0.88890 0.89073 0.87243 0.88482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 10.32 36.00 0.37 -0.56 16 2 C 0.12 1.84 7.27 -81.96 -0.60 1.24 16 3 N -0.30 -4.42 12.48 33.93 0.42 -3.99 16 4 N -0.36 -4.57 3.97 -63.22 -0.25 -4.82 16 5 C 0.10 0.71 11.05 59.85 0.66 1.37 16 6 C 0.14 1.90 7.02 -81.45 -0.57 1.33 16 7 C -0.10 -1.06 9.70 36.01 0.35 -0.71 16 8 C -0.30 -4.74 5.46 -104.97 -0.57 -5.31 16 9 C 0.44 7.66 6.30 -31.54 -0.20 7.46 16 10 O -0.42 -7.56 17.26 5.41 0.09 -7.47 16 11 C 0.46 9.14 7.69 -11.75 -0.09 9.05 16 12 O -0.51 -11.14 14.06 5.43 0.08 -11.07 16 13 N -0.60 -12.83 4.87 -9.98 -0.05 -12.88 16 14 C -0.01 -0.19 6.33 -83.25 -0.53 -0.71 16 15 C -0.07 -1.55 8.68 -39.42 -0.34 -1.90 16 16 C -0.24 -5.49 10.03 -39.36 -0.39 -5.88 16 17 C -0.09 -1.99 9.96 -39.99 -0.40 -2.38 16 18 C -0.21 -5.16 7.87 -39.28 -0.31 -5.46 16 19 C 0.09 2.40 5.32 -106.64 -0.57 1.83 16 20 C -0.52 -12.99 8.35 -37.87 -0.32 -13.31 16 21 H 0.08 1.86 7.39 -52.49 -0.39 1.47 16 22 C 0.04 1.00 4.95 -17.31 -0.09 0.92 16 23 N -0.79 -19.92 12.32 55.55 0.68 -19.23 16 24 Si 1.06 20.68 30.00 -169.99 -5.10 15.58 16 25 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 26 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 27 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.08 0.85 8.14 -51.92 -0.42 0.42 16 30 H 0.08 0.94 7.90 -51.93 -0.41 0.53 16 31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.45 7.63 -51.93 -0.40 0.06 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 0.56 7.71 -51.93 -0.40 0.16 16 36 H 0.09 0.98 7.98 -51.93 -0.41 0.57 16 37 H 0.41 8.33 7.44 -40.82 -0.30 8.03 16 38 H 0.11 2.57 6.20 -52.49 -0.33 2.24 16 39 H 0.09 1.88 8.06 -52.48 -0.42 1.45 16 40 H 0.09 1.83 8.06 -52.48 -0.42 1.41 16 41 H 0.11 2.76 6.45 -52.48 -0.34 2.42 16 42 H 0.30 7.80 6.62 -40.82 -0.27 7.53 16 LS Contribution 364.75 15.07 5.50 5.50 Total: -1.00 -31.09 364.75 -7.22 -38.31 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -5.00 Total: 13.09 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: -3.59 Total: -13.03 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.81 Total: -40.92 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: 0.17 Total: -18.53 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.10 Total: 15.58 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.09 -7.22 -38.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339168352.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.679 kcal (2) G-P(sol) polarization free energy of solvation -31.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds