Wall clock time and date at job start Tue Mar 31 2020 15:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30362 * 126.00314 * 2 1 4 4 N 1.39898 * 109.03547 * 179.97438 * 3 2 1 5 5 C 1.46505 * 125.70389 * 180.02562 * 4 3 2 6 6 C 1.34149 * 108.59668 * 359.74340 * 4 3 2 7 7 C 1.50699 * 126.32958 * 180.26704 * 6 4 3 8 8 C 1.38583 * 107.34061 * 0.39801 * 6 4 3 9 9 C 1.46970 * 126.48382 * 179.86806 * 8 6 4 10 10 O 1.21445 * 120.00312 * 94.65846 * 9 8 6 11 11 C 1.49096 * 120.00091 * 274.65392 * 9 8 6 12 12 O 1.21421 * 119.99941 * 5.02114 * 11 9 8 13 13 N 1.34774 * 120.00362 * 185.01736 * 11 9 8 14 14 C 1.38792 * 120.00019 * 184.38196 * 13 11 9 15 15 C 1.38757 * 120.29748 * 325.31213 * 14 13 11 16 16 C 1.38158 * 120.02260 * 180.25104 * 15 14 13 17 17 C 1.38911 * 120.63747 * 359.74640 * 16 15 14 18 18 C 1.36422 * 120.60357 * 359.97438 * 17 16 15 19 19 C 1.40774 * 119.94813 * 0.02562 * 18 17 16 20 20 C 1.40953 * 120.31579 * 179.97438 * 19 18 17 21 21 H 1.08001 * 120.00472 * 154.82642 * 20 19 18 22 22 C 1.40069 * 119.99548 * 334.82904 * 20 19 18 23 23 N 1.30786 * 120.00075 * 334.82682 * 22 20 19 24 24 Si 1.86801 * 119.99792 * 154.82192 * 22 20 19 25 25 H 1.48503 * 109.46723 * 180.02562 * 24 22 20 26 26 H 1.48502 * 109.47250 * 299.99830 * 24 22 20 27 27 H 1.48500 * 109.47098 * 60.00095 * 24 22 20 28 28 H 1.09000 * 109.47358 * 275.03470 * 1 2 3 29 29 H 1.09011 * 109.47168 * 35.02730 * 1 2 3 30 30 H 1.09000 * 109.47420 * 155.02969 * 1 2 3 31 31 H 1.08996 * 109.46867 * 89.97261 * 5 4 3 32 32 H 1.08997 * 109.46969 * 209.97341 * 5 4 3 33 33 H 1.09003 * 109.46828 * 329.97276 * 5 4 3 34 34 H 1.09007 * 109.46929 * 270.15645 * 7 6 4 35 35 H 1.09000 * 109.47095 * 30.15334 * 7 6 4 36 36 H 1.08997 * 109.46985 * 150.15876 * 7 6 4 37 37 H 0.97003 * 119.99846 * 4.38699 * 13 11 9 38 38 H 1.07998 * 119.99188 * 359.97438 * 15 14 13 39 39 H 1.08004 * 119.67438 * 179.76082 * 16 15 14 40 40 H 1.08006 * 119.70217 * 180.02562 * 17 16 15 41 41 H 1.08005 * 120.02384 * 180.02562 * 18 17 16 42 42 H 0.97002 * 120.00082 * 354.63205 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2733 1.0546 0.0000 4 7 3.6114 0.6463 0.0006 5 6 4.7763 1.5347 0.0013 6 6 3.6495 -0.6946 0.0067 7 6 4.8885 -1.5525 0.0150 8 6 2.3390 -1.1451 0.0007 9 6 1.8967 -2.5467 0.0015 10 8 1.6270 -3.0978 1.0495 11 6 1.7790 -3.2919 -1.2845 12 8 2.1348 -2.7718 -2.3224 13 7 1.2778 -4.5430 -1.2950 14 6 1.2524 -5.2705 -2.4767 15 6 1.0331 -4.6305 -3.6881 16 6 1.0037 -5.3609 -4.8605 17 6 1.1974 -6.7364 -4.8426 18 6 1.4206 -7.3910 -3.6667 19 6 1.4557 -6.6714 -2.4573 20 6 1.6852 -7.3401 -1.2379 21 1 2.1086 -6.8057 -0.4003 22 6 1.3643 -8.6977 -1.1125 23 7 0.4432 -9.2252 -1.8767 24 14 2.2518 -9.7549 0.1461 25 1 1.7329 -11.1447 0.0792 26 1 3.7077 -9.7560 -0.1468 27 1 2.0209 -9.2045 1.5059 28 1 -0.3634 0.0902 1.0237 29 1 -0.3634 0.8416 -0.5899 30 1 -0.3634 -0.9316 -0.4338 31 1 5.0644 1.7552 1.0291 32 1 5.6053 1.0472 -0.5118 33 1 4.5259 2.4626 -0.5129 34 1 5.1926 -1.7615 -1.0107 35 1 5.6911 -1.0265 0.5319 36 1 4.6778 -2.4899 0.5298 37 1 0.9348 -4.9349 -0.4766 38 1 0.8809 -3.5616 -3.7142 39 1 0.8288 -4.8575 -5.7999 40 1 1.1718 -7.2925 -5.7681 41 1 1.5704 -8.4607 -3.6637 42 1 -0.0718 -8.6617 -2.4751 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339168352.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:59 Heat of formation + Delta-G solvation = 6.289600 kcal Electronic energy + Delta-G solvation = -27292.977819 eV Core-core repulsion = 23431.875831 eV Total energy + Delta-G solvation = -3861.101988 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.66025 -41.56473 -40.01661 -38.96336 -35.90045 -35.65738 -35.32969 -33.21439 -31.29273 -30.68302 -30.57439 -29.11876 -27.29447 -26.88715 -25.76691 -23.49962 -22.87270 -21.75140 -20.65929 -20.49511 -19.88283 -18.97465 -18.24287 -17.61215 -16.87665 -16.83859 -16.68709 -16.36516 -15.89147 -15.74352 -15.41086 -15.00748 -14.70301 -14.53721 -14.48063 -14.24690 -14.17777 -14.09884 -13.90691 -13.53742 -13.50687 -13.31434 -12.99117 -12.92528 -12.75602 -12.72054 -12.42809 -12.09972 -11.95827 -11.77620 -11.53359 -11.11695 -10.85329 -10.53144 -10.23453 -9.63949 -9.57790 -9.34538 -8.88785 -6.45390 -0.32654 0.57290 0.81728 0.91036 1.21034 1.37898 1.53332 1.65083 1.81098 1.88056 1.96683 2.32581 2.67095 3.17132 3.39683 3.42936 3.51644 3.82507 3.96432 4.17833 4.27156 4.37140 4.37198 4.40743 4.49238 4.60140 4.62902 4.65418 4.66416 4.79362 4.87460 4.88384 4.94199 5.02149 5.22794 5.38282 5.44334 5.48491 5.70261 5.75866 5.86526 5.86901 6.00130 6.10008 6.30380 6.47127 6.49170 6.74720 6.84519 7.04180 8.02376 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.014838 B = 0.003508 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.541548 B = 7979.039424 C = 8755.838564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.110 3.890 3 N -0.318 5.318 4 N -0.356 5.356 5 C 0.085 3.915 6 C 0.143 3.857 7 C -0.101 4.101 8 C -0.337 4.337 9 C 0.458 3.542 10 O -0.426 6.426 11 C 0.461 3.539 12 O -0.525 6.525 13 N -0.607 5.607 14 C -0.014 4.014 15 C -0.079 4.079 16 C -0.239 4.239 17 C -0.089 4.089 18 C -0.225 4.225 19 C 0.070 3.930 20 C -0.544 4.544 21 H 0.076 0.924 22 C 0.010 3.990 23 N -0.808 5.808 24 Si 1.112 2.888 25 H -0.271 1.271 26 H -0.266 1.266 27 H -0.258 1.258 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.118 0.882 36 H 0.077 0.923 37 H 0.413 0.587 38 H 0.113 0.887 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.098 0.902 42 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.404 15.194 5.888 17.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.056 4.056 3 N -0.140 5.140 4 N -0.135 5.135 5 C -0.054 4.054 6 C 0.010 3.990 7 C -0.159 4.159 8 C -0.350 4.350 9 C 0.327 3.673 10 O -0.295 6.295 11 C 0.246 3.754 12 O -0.403 6.403 13 N -0.252 5.252 14 C -0.108 4.108 15 C -0.099 4.099 16 C -0.258 4.258 17 C -0.108 4.108 18 C -0.245 4.245 19 C 0.066 3.934 20 C -0.571 4.571 21 H 0.094 0.906 22 C -0.208 4.208 23 N -0.431 5.431 24 Si 0.929 3.071 25 H -0.196 1.196 26 H -0.190 1.190 27 H -0.182 1.182 28 H 0.116 0.884 29 H 0.113 0.887 30 H 0.087 0.913 31 H 0.117 0.883 32 H 0.134 0.866 33 H 0.119 0.881 34 H 0.113 0.887 35 H 0.136 0.864 36 H 0.096 0.904 37 H 0.250 0.750 38 H 0.131 0.869 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.116 0.884 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.764 15.131 6.310 18.140 hybrid contribution -0.573 0.407 -0.626 0.941 sum 7.192 15.539 5.684 18.041 Atomic orbital electron populations 1.20364 0.84774 1.03957 1.04621 1.22617 0.97861 0.88257 0.96842 1.76932 0.87023 1.22419 1.27625 1.48476 1.06309 1.04214 1.54522 1.22415 0.83109 0.94350 1.05546 1.21795 0.95977 0.85441 0.95763 1.20741 0.91959 0.98203 1.05007 1.19961 0.94286 0.93151 1.27630 1.21538 0.72218 0.86710 0.86813 1.90576 1.34688 1.69449 1.34790 1.21143 0.79986 0.82934 0.91366 1.90674 1.48363 1.67686 1.33543 1.42740 1.56994 1.13665 1.11759 1.17761 1.15686 0.91638 0.85685 1.20871 0.98268 0.98913 0.91867 1.20606 1.14099 0.93904 0.97238 1.20704 0.98294 0.94579 0.97200 1.20802 1.12122 0.99037 0.92538 1.17776 0.90862 0.90531 0.94245 1.20566 1.39728 0.98085 0.98746 0.90589 1.28320 0.94425 0.97699 1.00352 1.70554 1.13400 1.41556 1.17546 0.83057 0.75811 0.74627 0.73594 1.19600 1.19043 1.18186 0.88359 0.88694 0.91349 0.88307 0.86597 0.88084 0.88659 0.86398 0.90375 0.74991 0.86901 0.86106 0.86263 0.88412 0.90011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.85 10.32 71.24 0.73 -1.12 16 2 C 0.11 3.26 7.27 43.59 0.32 3.57 16 3 N -0.32 -8.97 12.48 -46.56 -0.58 -9.55 16 4 N -0.36 -8.22 3.97 -353.93 -1.41 -9.63 16 5 C 0.08 0.94 11.05 127.77 1.41 2.35 16 6 C 0.14 3.70 7.02 42.29 0.30 3.99 16 7 C -0.10 -1.89 9.70 71.24 0.69 -1.20 16 8 C -0.34 -10.65 5.46 -20.09 -0.11 -10.76 16 9 C 0.46 16.05 6.30 27.48 0.17 16.22 16 10 O -0.43 -15.53 17.26 -3.54 -0.06 -15.59 16 11 C 0.46 18.64 7.69 87.16 0.67 19.31 16 12 O -0.52 -23.20 14.06 -3.47 -0.05 -23.25 16 13 N -0.61 -26.36 4.87 -303.83 -1.48 -27.84 16 14 C -0.01 -0.66 6.33 38.99 0.25 -0.41 16 15 C -0.08 -3.72 8.68 22.37 0.19 -3.52 16 16 C -0.24 -10.53 10.03 22.41 0.22 -10.30 16 17 C -0.09 -4.01 9.96 22.01 0.22 -3.79 16 18 C -0.23 -11.32 7.87 22.47 0.18 -11.14 16 19 C 0.07 3.62 5.32 -21.17 -0.11 3.51 16 20 C -0.54 -27.67 8.35 23.38 0.20 -27.47 16 21 H 0.08 3.76 7.39 -2.91 -0.02 3.74 16 22 C 0.01 0.49 4.95 85.29 0.42 0.91 16 23 N -0.81 -41.68 12.32 21.85 0.27 -41.41 16 24 Si 1.11 41.43 30.00 68.60 2.06 43.49 16 25 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 26 H -0.27 -9.47 7.11 99.48 0.71 -8.77 16 27 H -0.26 -8.85 7.11 99.48 0.71 -8.15 16 28 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 30 H 0.07 1.69 7.90 -2.39 -0.02 1.67 16 31 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.12 0.70 7.63 -2.39 -0.02 0.69 16 33 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 35 H 0.12 1.22 7.71 -2.39 -0.02 1.21 16 36 H 0.08 1.64 7.98 -2.39 -0.02 1.62 16 37 H 0.41 17.25 7.44 -92.71 -0.69 16.56 16 38 H 0.11 5.21 6.20 -2.91 -0.02 5.20 16 39 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 40 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 41 H 0.10 5.07 6.45 -2.91 -0.02 5.05 16 42 H 0.29 15.41 6.62 -92.71 -0.61 14.79 16 Total: -1.00 -67.91 364.75 5.04 -62.86 By element: Atomic # 1 Polarization: 40.22 SS G_CDS: 0.54 Total: 40.76 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: 5.75 Total: -19.85 kcal Atomic # 7 Polarization: -85.23 SS G_CDS: -3.20 Total: -88.43 kcal Atomic # 8 Polarization: -38.73 SS G_CDS: -0.11 Total: -38.84 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.06 Total: 43.49 kcal Total: -67.91 5.04 -62.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339168352.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.153 kcal (2) G-P(sol) polarization free energy of solvation -67.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds