Wall clock time and date at job start Tue Mar 31 2020 16:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29414 * 125.70010 * 2 1 4 4 N 1.26396 * 116.47623 * 179.73746 * 3 2 1 5 5 C 1.29409 * 116.47502 * 359.97438 * 4 3 2 6 6 C 1.50707 * 125.69372 * 180.02562 * 5 4 3 7 7 O 1.42907 * 109.46778 * 89.97718 * 6 5 4 8 8 C 1.42895 * 113.99581 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.46969 * 179.97438 * 8 7 6 10 10 O 1.21284 * 120.00127 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00118 * 179.97438 * 9 8 7 12 12 C 1.46510 * 120.00283 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47216 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.47102 * 300.00095 * 13 12 11 15 15 C 1.53007 * 109.47174 * 60.00084 * 13 12 11 16 16 C 1.52999 * 109.46840 * 179.97438 * 13 12 11 17 17 C 1.50705 * 109.47072 * 179.97438 * 16 13 12 18 18 H 1.08001 * 119.99756 * 0.02562 * 17 16 13 19 19 C 1.37876 * 119.99835 * 180.02562 * 17 16 13 20 20 N 1.31515 * 119.99632 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00203 * 0.02562 * 19 17 16 22 22 H 1.48493 * 109.47228 * 90.00306 * 21 19 17 23 23 H 1.48499 * 109.46849 * 210.00195 * 21 19 17 24 24 H 1.48496 * 109.46787 * 329.99936 * 21 19 17 25 25 S 1.71215 * 108.61179 * 0.02562 * 5 4 3 26 26 H 1.09001 * 109.47835 * 90.02159 * 1 2 3 27 27 H 1.09007 * 109.47583 * 210.02562 * 1 2 3 28 28 H 1.08996 * 109.47200 * 330.02073 * 1 2 3 29 29 H 1.09000 * 109.47136 * 209.97649 * 6 5 4 30 30 H 1.09001 * 109.46989 * 329.97993 * 6 5 4 31 31 H 1.09004 * 109.47516 * 299.99408 * 8 7 6 32 32 H 1.09001 * 109.47475 * 60.00001 * 8 7 6 33 33 H 0.97003 * 120.00336 * 0.02562 * 11 9 8 34 34 H 1.09004 * 109.46392 * 300.00340 * 12 11 9 35 35 H 1.09001 * 109.46982 * 59.99943 * 12 11 9 36 36 H 1.08995 * 109.47324 * 59.99812 * 14 13 12 37 37 H 1.09003 * 109.47027 * 180.02562 * 14 13 12 38 38 H 1.09000 * 109.47260 * 299.99743 * 14 13 12 39 39 H 1.09001 * 109.46727 * 59.99505 * 15 13 12 40 40 H 1.08994 * 109.47153 * 179.97438 * 15 13 12 41 41 H 1.09004 * 109.46914 * 299.99822 * 15 13 12 42 42 H 1.08995 * 109.47746 * 300.00396 * 16 13 12 43 43 H 1.09000 * 109.46948 * 60.00608 * 16 13 12 44 44 H 0.96999 * 120.00284 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0509 0.0000 4 7 3.5097 0.8484 0.0052 5 6 3.8935 -0.3875 0.0104 6 6 5.3232 -0.8643 0.0177 7 8 5.7696 -1.0104 1.3673 8 6 7.1207 -1.4601 1.4870 9 6 7.4837 -1.5776 2.9449 10 8 6.6658 -1.3037 3.7975 11 7 8.7170 -1.9880 3.3013 12 6 9.0698 -2.1028 4.7187 13 6 10.5164 -2.5842 4.8468 14 6 10.6609 -3.9502 4.1731 15 6 11.4502 -1.5796 4.1685 16 6 10.8849 -2.7034 6.3269 17 6 12.3096 -3.1781 6.4532 18 1 12.8939 -3.3747 5.5664 19 6 12.8671 -3.3615 7.7009 20 7 14.1106 -3.7753 7.8110 21 14 11.8563 -3.0221 9.2346 22 1 11.1462 -4.2605 9.6435 23 1 12.7546 -2.5814 10.3319 24 1 10.8647 -1.9547 8.9477 25 16 2.5060 -1.3906 0.0078 26 1 -0.3635 -0.0004 -1.0276 27 1 -0.3634 -0.8898 0.5142 28 1 -0.3633 0.8901 0.5135 29 1 5.3883 -1.8252 -0.4927 30 1 5.9514 -0.1366 -0.4961 31 1 7.2236 -2.4334 1.0071 32 1 7.7860 -0.7446 1.0038 33 1 9.3711 -2.2075 2.6195 34 1 8.9672 -1.1294 5.1985 35 1 8.4043 -2.8181 5.2019 36 1 10.3984 -3.8648 3.1186 37 1 11.6914 -4.2933 4.2648 38 1 9.9957 -4.6658 4.6562 39 1 11.3471 -0.6064 4.6485 40 1 12.4808 -1.9223 4.2602 41 1 11.1877 -1.4943 3.1140 42 1 10.7820 -1.7301 6.8066 43 1 10.2198 -3.4188 6.8105 44 1 14.5028 -3.9047 8.6887 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345990557.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:06 Heat of formation + Delta-G solvation = -27.681102 kcal Electronic energy + Delta-G solvation = -24528.725322 eV Core-core repulsion = 20801.594205 eV Total energy + Delta-G solvation = -3727.131117 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.70661 -39.88920 -38.22171 -37.06382 -33.84645 -33.72112 -32.15925 -31.00078 -28.83620 -27.74429 -26.94710 -26.60330 -25.61311 -24.66895 -22.46631 -20.61700 -20.28676 -19.78526 -18.45855 -17.48422 -17.17078 -16.75318 -16.59813 -16.09252 -15.81364 -15.29820 -15.01268 -14.49223 -14.12030 -13.95703 -13.67921 -13.63810 -13.56843 -13.45169 -13.01278 -12.77445 -12.76127 -12.35722 -12.27174 -12.19021 -11.27840 -11.16591 -11.03280 -10.89649 -10.69202 -10.64754 -10.53054 -10.24778 -10.21858 -10.07167 -10.00757 -9.92023 -9.76077 -9.47192 -9.02423 -8.89150 -8.55432 -6.06290 -4.03767 -0.10139 0.43239 0.90190 2.03309 2.62960 2.73778 3.30437 3.38674 3.41883 3.42887 3.83297 4.12548 4.30151 4.44091 4.51956 4.66037 4.77588 4.80545 4.83836 4.88235 4.98832 5.08260 5.26182 5.33449 5.33643 5.48634 5.58890 6.05648 6.06824 6.12865 6.26664 6.39546 6.45786 6.55416 6.63802 6.85908 6.98046 7.01510 7.17173 7.33674 7.56452 7.76612 8.12279 8.26909 8.50332 8.97339 9.56402 11.06324 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.030888 B = 0.001840 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.292205 B =15214.655425 C =15616.768207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.018 4.018 3 N -0.262 5.262 4 N -0.237 5.237 5 C -0.022 4.022 6 C 0.143 3.857 7 O -0.354 6.354 8 C 0.044 3.956 9 C 0.508 3.492 10 O -0.523 6.523 11 N -0.719 5.719 12 C 0.127 3.873 13 C -0.063 4.063 14 C -0.129 4.129 15 C -0.129 4.129 16 C -0.002 4.002 17 C -0.512 4.512 18 H 0.078 0.922 19 C 0.067 3.933 20 N -0.903 5.903 21 Si 0.875 3.125 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.265 1.265 25 S 0.197 5.803 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.400 0.600 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.031 0.969 37 H 0.073 0.927 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.073 0.927 41 H 0.031 0.969 42 H 0.019 0.981 43 H 0.014 0.986 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.636 2.292 -21.591 31.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.296 4.296 3 N -0.101 5.101 4 N -0.076 5.076 5 C -0.301 4.301 6 C 0.062 3.938 7 O -0.272 6.272 8 C -0.036 4.036 9 C 0.292 3.708 10 O -0.399 6.399 11 N -0.373 5.373 12 C 0.005 3.995 13 C -0.064 4.064 14 C -0.186 4.186 15 C -0.186 4.186 16 C -0.040 4.040 17 C -0.550 4.550 18 H 0.096 0.904 19 C -0.134 4.134 20 N -0.542 5.542 21 Si 0.702 3.298 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.190 1.190 25 S 0.440 5.560 26 H 0.111 0.889 27 H 0.105 0.895 28 H 0.114 0.886 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.236 0.764 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.050 0.950 37 H 0.092 0.908 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.092 0.908 41 H 0.050 0.950 42 H 0.037 0.963 43 H 0.032 0.968 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -23.154 2.835 -20.661 31.161 hybrid contribution 0.146 0.081 0.463 0.492 sum -23.007 2.915 -20.198 30.754 Atomic orbital electron populations 1.20424 0.83676 1.05033 1.04467 1.29365 1.04580 0.92023 1.03593 1.71498 0.96747 1.26745 1.15139 1.71423 1.06601 1.17043 1.12548 1.28665 1.02207 0.92824 1.06388 1.20670 0.86667 1.00848 0.85580 1.88082 1.27395 1.88069 1.23623 1.22302 0.84492 1.00936 0.95856 1.20069 0.82625 0.78053 0.90014 1.90747 1.49044 1.48095 1.51995 1.46037 1.13159 1.68111 1.09947 1.21672 0.96948 1.01412 0.79498 1.20705 0.90976 0.95286 0.99422 1.21779 1.03422 0.96310 0.97100 1.21780 1.01210 0.98538 0.97095 1.19594 0.97767 0.96822 0.89826 1.21069 0.95524 1.44398 0.93960 0.90392 1.24999 0.94756 0.94693 0.98987 1.69898 1.13280 1.47034 1.24011 0.86859 0.80488 0.79223 0.83214 1.20369 1.21486 1.18981 1.83703 0.97179 1.11212 1.63908 0.88917 0.89457 0.88586 0.90156 0.89240 0.89768 0.89651 0.76449 0.91674 0.91682 0.95010 0.90815 0.93371 0.93343 0.90813 0.94998 0.96318 0.96784 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.32 10.48 36.00 0.38 0.06 16 2 C -0.02 -0.15 7.53 -13.30 -0.10 -0.25 16 3 N -0.26 -3.20 11.66 32.58 0.38 -2.82 16 4 N -0.24 -3.08 11.66 32.58 0.38 -2.70 16 5 C -0.02 -0.23 7.16 -13.30 -0.10 -0.32 16 6 C 0.14 1.16 6.54 36.01 0.24 1.39 16 7 O -0.35 -4.19 9.86 -55.14 -0.54 -4.73 16 8 C 0.04 0.41 6.42 36.01 0.23 0.64 16 9 C 0.51 7.09 7.91 -10.99 -0.09 7.00 16 10 O -0.52 -9.99 16.50 -14.36 -0.24 -10.23 16 11 N -0.72 -9.28 4.96 -60.29 -0.30 -9.58 16 12 C 0.13 2.07 4.56 -4.04 -0.02 2.05 16 13 C -0.06 -1.12 0.54 -154.51 -0.08 -1.20 16 14 C -0.13 -2.11 8.05 37.16 0.30 -1.81 16 15 C -0.13 -2.14 8.05 37.16 0.30 -1.84 16 16 C 0.00 -0.05 3.11 -27.88 -0.09 -0.14 16 17 C -0.51 -13.49 8.20 -34.44 -0.28 -13.77 16 18 H 0.08 2.17 5.92 -52.49 -0.31 1.86 16 19 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 20 N -0.90 -26.96 13.96 55.43 0.77 -26.18 16 21 Si 0.87 21.41 27.47 -169.99 -4.67 16.74 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 24 H -0.27 -6.30 6.54 56.52 0.37 -5.94 16 25 S 0.20 1.47 23.04 -107.50 -2.48 -1.01 16 26 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.40 4.05 6.16 -40.82 -0.25 3.80 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 37 H 0.07 1.37 6.62 -51.93 -0.34 1.03 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.07 1.38 6.62 -51.93 -0.34 1.04 16 41 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 42 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 43 H 0.01 0.32 7.57 -51.93 -0.39 -0.08 16 44 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 LS Contribution 375.55 15.07 5.66 5.66 Total: -1.00 -36.26 375.55 -6.99 -43.25 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -6.55 Total: -1.96 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: 0.59 Total: -6.42 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: 1.23 Total: -41.29 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.78 Total: -14.96 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -2.48 Total: -1.01 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.26 -6.99 -43.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345990557.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.564 kcal (2) G-P(sol) polarization free energy of solvation -36.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds