Wall clock time and date at job start Tue Mar 31 2020 16:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29414 * 125.70010 * 2 1 4 4 N 1.26396 * 116.47623 * 179.73746 * 3 2 1 5 5 C 1.29409 * 116.47502 * 359.97438 * 4 3 2 6 6 C 1.50707 * 125.69372 * 180.02562 * 5 4 3 7 7 O 1.42907 * 109.46778 * 89.97718 * 6 5 4 8 8 C 1.42895 * 113.99581 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.46969 * 179.97438 * 8 7 6 10 10 O 1.21284 * 120.00127 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00118 * 179.97438 * 9 8 7 12 12 C 1.46510 * 120.00283 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47216 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.47102 * 300.00095 * 13 12 11 15 15 C 1.53007 * 109.47174 * 60.00084 * 13 12 11 16 16 C 1.52999 * 109.46840 * 179.97438 * 13 12 11 17 17 C 1.50705 * 109.47072 * 179.97438 * 16 13 12 18 18 H 1.08001 * 119.99756 * 0.02562 * 17 16 13 19 19 C 1.37876 * 119.99835 * 180.02562 * 17 16 13 20 20 N 1.31515 * 119.99632 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00203 * 0.02562 * 19 17 16 22 22 H 1.48493 * 109.47228 * 90.00306 * 21 19 17 23 23 H 1.48499 * 109.46849 * 210.00195 * 21 19 17 24 24 H 1.48496 * 109.46787 * 329.99936 * 21 19 17 25 25 S 1.71215 * 108.61179 * 0.02562 * 5 4 3 26 26 H 1.09001 * 109.47835 * 90.02159 * 1 2 3 27 27 H 1.09007 * 109.47583 * 210.02562 * 1 2 3 28 28 H 1.08996 * 109.47200 * 330.02073 * 1 2 3 29 29 H 1.09000 * 109.47136 * 209.97649 * 6 5 4 30 30 H 1.09001 * 109.46989 * 329.97993 * 6 5 4 31 31 H 1.09004 * 109.47516 * 299.99408 * 8 7 6 32 32 H 1.09001 * 109.47475 * 60.00001 * 8 7 6 33 33 H 0.97003 * 120.00336 * 0.02562 * 11 9 8 34 34 H 1.09004 * 109.46392 * 300.00340 * 12 11 9 35 35 H 1.09001 * 109.46982 * 59.99943 * 12 11 9 36 36 H 1.08995 * 109.47324 * 59.99812 * 14 13 12 37 37 H 1.09003 * 109.47027 * 180.02562 * 14 13 12 38 38 H 1.09000 * 109.47260 * 299.99743 * 14 13 12 39 39 H 1.09001 * 109.46727 * 59.99505 * 15 13 12 40 40 H 1.08994 * 109.47153 * 179.97438 * 15 13 12 41 41 H 1.09004 * 109.46914 * 299.99822 * 15 13 12 42 42 H 1.08995 * 109.47746 * 300.00396 * 16 13 12 43 43 H 1.09000 * 109.46948 * 60.00608 * 16 13 12 44 44 H 0.96999 * 120.00284 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0509 0.0000 4 7 3.5097 0.8484 0.0052 5 6 3.8935 -0.3875 0.0104 6 6 5.3232 -0.8643 0.0177 7 8 5.7696 -1.0104 1.3673 8 6 7.1207 -1.4601 1.4870 9 6 7.4837 -1.5776 2.9449 10 8 6.6658 -1.3037 3.7975 11 7 8.7170 -1.9880 3.3013 12 6 9.0698 -2.1028 4.7187 13 6 10.5164 -2.5842 4.8468 14 6 10.6609 -3.9502 4.1731 15 6 11.4502 -1.5796 4.1685 16 6 10.8849 -2.7034 6.3269 17 6 12.3096 -3.1781 6.4532 18 1 12.8939 -3.3747 5.5664 19 6 12.8671 -3.3615 7.7009 20 7 14.1106 -3.7753 7.8110 21 14 11.8563 -3.0221 9.2346 22 1 11.1462 -4.2605 9.6435 23 1 12.7546 -2.5814 10.3319 24 1 10.8647 -1.9547 8.9477 25 16 2.5060 -1.3906 0.0078 26 1 -0.3635 -0.0004 -1.0276 27 1 -0.3634 -0.8898 0.5142 28 1 -0.3633 0.8901 0.5135 29 1 5.3883 -1.8252 -0.4927 30 1 5.9514 -0.1366 -0.4961 31 1 7.2236 -2.4334 1.0071 32 1 7.7860 -0.7446 1.0038 33 1 9.3711 -2.2075 2.6195 34 1 8.9672 -1.1294 5.1985 35 1 8.4043 -2.8181 5.2019 36 1 10.3984 -3.8648 3.1186 37 1 11.6914 -4.2933 4.2648 38 1 9.9957 -4.6658 4.6562 39 1 11.3471 -0.6064 4.6485 40 1 12.4808 -1.9223 4.2602 41 1 11.1877 -1.4943 3.1140 42 1 10.7820 -1.7301 6.8066 43 1 10.2198 -3.4188 6.8105 44 1 14.5028 -3.9047 8.6887 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345990557.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:05 Heat of formation + Delta-G solvation = -54.429945 kcal Electronic energy + Delta-G solvation = -24529.885239 eV Core-core repulsion = 20801.594205 eV Total energy + Delta-G solvation = -3728.291034 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.41020 -40.97506 -39.16568 -38.32505 -35.22526 -34.43577 -34.01243 -31.58903 -30.04548 -29.23147 -27.96246 -27.69976 -26.73309 -25.27734 -24.25585 -21.65922 -21.01582 -20.44143 -19.86402 -18.90618 -18.30999 -17.98507 -17.31725 -16.95469 -16.57817 -16.41528 -16.07403 -15.98862 -15.32317 -15.19112 -15.06407 -14.49010 -14.36579 -14.21065 -14.12650 -13.96466 -13.91721 -13.49503 -13.20049 -12.98386 -12.91019 -12.82591 -12.58487 -12.29286 -12.16284 -11.78504 -11.56210 -11.50755 -11.34818 -11.29143 -10.97973 -10.91516 -10.82750 -10.74602 -10.70850 -10.65866 -10.07809 -8.22948 -6.22668 -0.71950 -0.14241 0.26375 1.31376 1.34546 1.37966 1.47502 1.60302 1.89300 2.38197 2.73945 3.12546 3.20452 3.56062 3.72158 3.83994 3.94441 4.06025 4.09135 4.17237 4.25032 4.28809 4.35104 4.43928 4.59914 4.64666 4.70065 4.71689 4.79208 4.97250 5.03072 5.04639 5.11641 5.30430 5.36927 5.41986 5.46521 5.56882 5.71550 5.77050 5.85313 6.37592 6.59127 6.84222 7.26275 7.40107 7.43816 8.92417 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.030888 B = 0.001840 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.292205 B =15214.655425 C =15616.768207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.022 4.022 3 N -0.308 5.308 4 N -0.280 5.280 5 C -0.045 4.045 6 C 0.140 3.860 7 O -0.394 6.394 8 C 0.049 3.951 9 C 0.504 3.496 10 O -0.583 6.583 11 N -0.705 5.705 12 C 0.139 3.861 13 C -0.058 4.058 14 C -0.124 4.124 15 C -0.125 4.125 16 C -0.005 4.005 17 C -0.501 4.501 18 H 0.055 0.945 19 C 0.006 3.994 20 N -0.949 5.949 21 Si 0.932 3.068 22 H -0.271 1.271 23 H -0.289 1.289 24 H -0.255 1.255 25 S 0.252 5.748 26 H 0.113 0.887 27 H 0.110 0.890 28 H 0.094 0.906 29 H 0.120 0.880 30 H 0.101 0.899 31 H 0.128 0.872 32 H 0.118 0.882 33 H 0.417 0.583 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.045 0.955 38 H 0.044 0.956 39 H 0.041 0.959 40 H 0.045 0.955 41 H 0.074 0.926 42 H 0.012 0.988 43 H 0.012 0.988 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.541 1.540 -23.791 34.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.300 4.300 3 N -0.147 5.147 4 N -0.120 5.120 5 C -0.324 4.324 6 C 0.060 3.940 7 O -0.313 6.313 8 C -0.030 4.030 9 C 0.291 3.709 10 O -0.463 6.463 11 N -0.359 5.359 12 C 0.015 3.985 13 C -0.059 4.059 14 C -0.181 4.181 15 C -0.182 4.182 16 C -0.043 4.043 17 C -0.539 4.539 18 H 0.073 0.927 19 C -0.190 4.190 20 N -0.591 5.591 21 Si 0.757 3.243 22 H -0.197 1.197 23 H -0.215 1.215 24 H -0.178 1.178 25 S 0.496 5.504 26 H 0.132 0.868 27 H 0.128 0.872 28 H 0.112 0.888 29 H 0.137 0.863 30 H 0.119 0.881 31 H 0.146 0.854 32 H 0.136 0.864 33 H 0.256 0.744 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.093 0.907 42 H 0.030 0.970 43 H 0.030 0.970 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -25.048 2.076 -22.907 34.007 hybrid contribution 0.702 0.261 1.068 1.304 sum -24.346 2.337 -21.840 32.790 Atomic orbital electron populations 1.20677 0.81014 1.06054 1.06081 1.30032 1.06308 0.92058 1.01637 1.71441 0.97088 1.28702 1.17463 1.71362 1.07389 1.18991 1.14243 1.29146 1.04289 0.92951 1.06059 1.20986 0.85567 1.03128 0.84293 1.88012 1.28648 1.88667 1.25960 1.22425 0.84190 1.04183 0.92164 1.20992 0.81724 0.76283 0.91882 1.90727 1.50726 1.50660 1.54158 1.45807 1.13665 1.67704 1.08766 1.21263 0.95385 1.00187 0.81638 1.20565 0.92195 0.96675 0.96451 1.21711 1.01614 0.95085 0.99706 1.21719 0.99279 0.97540 0.99655 1.19581 0.95195 0.95934 0.93591 1.21369 0.97098 1.42478 0.92931 0.92719 1.25809 0.95725 0.95212 1.02276 1.70032 1.15092 1.49365 1.24617 0.85930 0.79191 0.79502 0.79649 1.19678 1.21500 1.17848 1.83394 0.95081 1.09329 1.62568 0.86841 0.87181 0.88763 0.86258 0.88094 0.85426 0.86442 0.74401 0.93161 0.92720 0.90654 0.93595 0.93716 0.93996 0.93542 0.90720 0.96999 0.96952 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.48 71.23 0.75 0.23 16 2 C -0.02 -0.36 7.53 88.46 0.67 0.31 16 3 N -0.31 -7.57 11.66 -50.85 -0.59 -8.17 16 4 N -0.28 -7.31 11.66 -50.85 -0.59 -7.90 16 5 C -0.05 -0.87 7.16 88.47 0.63 -0.24 16 6 C 0.14 1.87 6.54 71.24 0.47 2.34 16 7 O -0.39 -8.34 9.86 -129.94 -1.28 -9.62 16 8 C 0.05 0.71 6.42 71.24 0.46 1.17 16 9 C 0.50 12.80 7.91 87.66 0.69 13.50 16 10 O -0.58 -21.91 16.50 16.00 0.26 -21.65 16 11 N -0.70 -16.01 4.96 -463.04 -2.30 -18.31 16 12 C 0.14 4.31 4.56 86.38 0.39 4.71 16 13 C -0.06 -1.98 0.54 -52.18 -0.03 -2.01 16 14 C -0.12 -3.83 8.05 71.98 0.58 -3.25 16 15 C -0.12 -3.94 8.05 71.98 0.58 -3.36 16 16 C -0.01 -0.23 3.11 29.85 0.09 -0.13 16 17 C -0.50 -26.86 8.20 25.60 0.21 -26.65 16 18 H 0.05 3.14 5.92 -2.91 -0.02 3.12 16 19 C 0.01 0.35 5.47 84.65 0.46 0.81 16 20 N -0.95 -58.14 13.96 21.45 0.30 -57.84 16 21 Si 0.93 44.50 27.47 68.60 1.88 46.38 16 22 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 23 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 24 H -0.25 -11.59 6.54 99.48 0.65 -10.94 16 25 S 0.25 3.25 23.04 -56.49 -1.30 1.95 16 26 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 27 H 0.11 0.22 8.14 -2.38 -0.02 0.20 16 28 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.42 6.48 6.16 -92.71 -0.57 5.91 16 34 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.07 1.64 6.86 -2.39 -0.02 1.63 16 37 H 0.04 1.68 6.62 -2.39 -0.02 1.66 16 38 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.05 1.72 6.62 -2.39 -0.02 1.71 16 41 H 0.07 1.69 6.86 -2.38 -0.02 1.67 16 42 H 0.01 0.54 7.20 -2.39 -0.02 0.52 16 43 H 0.01 0.55 7.57 -2.39 -0.02 0.53 16 44 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -84.44 375.55 2.73 -81.71 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: 0.39 Total: 6.03 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: 5.95 Total: -12.58 kcal Atomic # 7 Polarization: -89.04 SS G_CDS: -3.18 Total: -92.22 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -1.02 Total: -31.27 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.88 Total: 46.38 kcal Atomic # 16 Polarization: 3.25 SS G_CDS: -1.30 Total: 1.95 kcal Total: -84.44 2.73 -81.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345990557.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.280 kcal (2) G-P(sol) polarization free energy of solvation -84.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds