Wall clock time and date at job start Tue Mar 31 2020 14:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30370 * 125.98298 * 2 1 4 4 N 1.39899 * 109.06333 * 179.97438 * 3 2 1 5 5 C 1.40125 * 125.70968 * 179.73287 * 4 3 2 6 6 C 1.38865 * 120.06449 * 144.75427 * 5 4 3 7 7 C 1.38119 * 119.92434 * 179.70079 * 6 5 4 8 8 C 1.38283 * 120.07250 * 0.57177 * 7 6 5 9 9 C 1.38283 * 120.13335 * 359.72376 * 8 7 6 10 10 C 1.38110 * 120.07407 * 359.97438 * 9 8 7 11 11 C 1.34383 * 108.57542 * 0.02562 * 4 3 2 12 12 C 1.50704 * 126.34318 * 179.97438 * 11 4 3 13 13 C 1.38630 * 107.30498 * 359.97438 * 11 4 3 14 14 C 1.46897 * 126.48632 * 179.97438 * 13 11 4 15 15 O 1.21431 * 119.99985 * 93.20928 * 14 13 11 16 16 C 1.49293 * 120.00134 * 273.20468 * 14 13 11 17 17 O 1.21365 * 119.99864 * 5.45303 * 16 14 13 18 18 N 1.34780 * 120.00082 * 185.45178 * 16 14 13 19 19 C 1.46505 * 120.00036 * 180.02562 * 18 16 14 20 20 C 1.50696 * 109.46770 * 179.97438 * 19 18 16 21 21 H 1.07995 * 120.00541 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99730 * 179.97438 * 20 19 18 23 23 N 1.31510 * 120.00055 * 179.97438 * 22 20 19 24 24 Si 1.86806 * 119.99993 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.46871 * 89.99478 * 24 22 20 26 26 H 1.48493 * 109.47368 * 209.99343 * 24 22 20 27 27 H 1.48498 * 109.46835 * 329.99725 * 24 22 20 28 28 H 1.09006 * 109.47127 * 85.52958 * 1 2 3 29 29 H 1.09004 * 109.47313 * 205.52695 * 1 2 3 30 30 H 1.08996 * 109.47481 * 325.52821 * 1 2 3 31 31 H 1.07994 * 120.03593 * 359.97438 * 6 5 4 32 32 H 1.08001 * 119.96033 * 180.29585 * 7 6 5 33 33 H 1.07995 * 119.92803 * 179.74242 * 8 7 6 34 34 H 1.08001 * 119.96438 * 179.97438 * 9 8 7 35 35 H 1.07999 * 120.03808 * 180.02562 * 10 9 8 36 36 H 1.08999 * 109.46871 * 90.02545 * 12 11 4 37 37 H 1.09003 * 109.46735 * 210.02356 * 12 11 4 38 38 H 1.08996 * 109.47548 * 330.02067 * 12 11 4 39 39 H 0.96999 * 119.99595 * 359.97438 * 18 16 14 40 40 H 1.09000 * 109.46492 * 299.99405 * 19 18 16 41 41 H 1.09001 * 109.47183 * 59.99758 * 19 18 16 42 42 H 0.97005 * 119.99731 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2730 1.0549 0.0000 4 7 3.6114 0.6478 0.0006 5 6 4.7250 1.4983 -0.0045 6 6 5.8743 1.1438 0.6896 7 6 6.9725 1.9814 0.6775 8 6 6.9242 3.1774 -0.0151 9 6 5.7789 3.5359 -0.7021 10 6 4.6796 2.6999 -0.6990 11 6 3.6502 -0.6955 0.0004 12 6 4.8894 -1.5531 0.0003 13 6 2.3391 -1.1459 0.0003 14 6 1.8968 -2.5467 -0.0005 15 8 1.6579 -3.1085 1.0492 16 6 1.7408 -3.2796 -1.2918 17 8 2.0732 -2.7519 -2.3330 18 7 1.2309 -4.5271 -1.3013 19 6 1.0783 -5.2465 -2.5684 20 6 0.4913 -6.6092 -2.3048 21 1 0.2551 -6.9092 -1.2946 22 6 0.2548 -7.4725 -3.3535 23 7 -0.2570 -8.6619 -3.1234 24 14 0.6628 -6.9533 -5.1009 25 1 2.0596 -7.3435 -5.4199 26 1 -0.2663 -7.6231 -6.0460 27 1 0.5194 -5.4806 -5.2259 28 1 -0.3634 0.0801 -1.0246 29 1 -0.3634 -0.9274 0.4429 30 1 -0.3634 0.8472 0.5816 31 1 5.9110 0.2122 1.2345 32 1 7.8683 1.7040 1.2131 33 1 7.7827 3.8324 -0.0195 34 1 5.7440 4.4708 -1.2417 35 1 3.7856 2.9803 -1.2362 36 1 5.1878 -1.7604 1.0280 37 1 4.6818 -2.4915 -0.5141 38 1 5.6948 -1.0280 -0.5130 39 1 0.9656 -4.9489 -0.4690 40 1 0.4148 -4.6858 -3.2268 41 1 2.0532 -5.3569 -3.0432 42 1 -0.4230 -9.2694 -3.8612 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348822274.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:15 Heat of formation + Delta-G solvation = 37.041318 kcal Electronic energy + Delta-G solvation = -26628.066550 eV Core-core repulsion = 22768.298057 eV Total energy + Delta-G solvation = -3859.768493 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.98049 -39.93528 -39.20315 -37.92261 -34.65615 -34.45016 -32.70255 -32.37439 -31.33394 -30.64272 -28.61294 -28.07991 -27.55983 -25.11218 -23.26978 -22.97951 -21.97456 -20.66626 -19.94045 -19.34849 -18.08091 -17.59294 -16.76841 -16.45459 -16.08822 -15.93490 -15.22015 -15.04854 -14.89818 -14.57086 -14.22969 -14.13641 -13.98142 -13.71810 -13.50313 -13.34382 -13.26792 -13.06537 -12.71193 -12.57463 -12.44353 -12.28394 -12.16494 -11.95609 -11.64477 -11.32355 -11.09792 -10.82572 -10.81673 -10.14353 -10.02443 -9.55131 -9.46342 -9.19405 -9.02833 -8.84071 -8.40161 -8.34090 -6.24866 -4.28301 0.49834 0.87494 1.15665 1.69800 2.02227 2.28343 3.22892 3.25410 3.29864 3.36214 3.38504 3.43485 4.20915 4.21165 4.29128 4.44207 4.45730 4.64637 4.68043 4.84313 4.89938 5.00004 5.09221 5.09797 5.14121 5.14403 5.24933 5.45792 5.50386 5.53064 5.59093 5.70421 5.72493 5.87515 5.95361 6.02178 6.29826 6.33436 6.62261 6.86899 6.89320 6.95025 7.10497 7.27873 7.41276 8.00041 8.37227 8.55860 8.76011 9.33250 10.86878 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.019391 B = 0.002661 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.625122 B =10521.373838 C =10920.917624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.131 3.869 3 N -0.291 5.291 4 N -0.314 5.314 5 C 0.153 3.847 6 C -0.132 4.132 7 C -0.099 4.099 8 C -0.122 4.122 9 C -0.101 4.101 10 C -0.107 4.107 11 C 0.141 3.859 12 C -0.105 4.105 13 C -0.285 4.285 14 C 0.436 3.564 15 O -0.413 6.413 16 C 0.464 3.536 17 O -0.521 6.521 18 N -0.674 5.674 19 C 0.217 3.783 20 C -0.547 4.547 21 H 0.082 0.918 22 C 0.079 3.921 23 N -0.889 5.889 24 Si 0.876 3.124 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.260 1.260 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.135 0.865 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.406 0.594 40 H 0.032 0.968 41 H 0.027 0.973 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.897 23.066 8.063 27.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.037 4.037 3 N -0.110 5.110 4 N -0.087 5.087 5 C 0.062 3.938 6 C -0.152 4.152 7 C -0.118 4.118 8 C -0.141 4.141 9 C -0.120 4.120 10 C -0.127 4.127 11 C 0.014 3.986 12 C -0.163 4.163 13 C -0.297 4.297 14 C 0.304 3.696 15 O -0.281 6.281 16 C 0.245 3.755 17 O -0.398 6.398 18 N -0.324 5.324 19 C 0.095 3.905 20 C -0.585 4.585 21 H 0.100 0.900 22 C -0.125 4.125 23 N -0.526 5.526 24 Si 0.702 3.298 25 H -0.198 1.198 26 H -0.208 1.208 27 H -0.185 1.185 28 H 0.107 0.893 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.153 0.847 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.103 0.897 39 H 0.242 0.758 40 H 0.050 0.950 41 H 0.045 0.955 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.002 24.233 7.799 28.585 hybrid contribution -0.005 -0.957 -0.653 1.159 sum 12.997 23.275 7.145 27.599 Atomic orbital electron populations 1.20339 0.85528 1.03983 1.04050 1.22411 0.96958 0.88425 0.95899 1.77124 0.84883 1.22094 1.26925 1.45276 1.04551 1.03173 1.55695 1.17503 0.84954 0.91839 0.99505 1.21168 0.92691 1.01651 0.99699 1.21024 0.97815 0.93932 0.98988 1.21286 0.98359 0.96889 0.97537 1.21099 0.92474 0.99468 0.98920 1.21055 0.99867 0.93171 0.98604 1.21430 0.96030 0.83817 0.97361 1.20779 0.92479 0.99127 1.03903 1.20038 0.92361 0.94631 1.22696 1.21994 0.72612 0.86044 0.88918 1.90583 1.34274 1.68310 1.34974 1.20563 0.81318 0.83502 0.90082 1.90715 1.49068 1.67378 1.32678 1.46256 1.59213 1.13744 1.13208 1.19671 0.97086 0.92312 0.81384 1.21059 1.43838 0.97022 0.96565 0.89968 1.24783 0.93985 0.94500 0.99220 1.69876 1.42885 1.07218 1.32604 0.86835 0.78874 0.79880 0.84222 1.19775 1.20790 1.18457 0.89338 0.90095 0.89943 0.84817 0.84855 0.85302 0.84968 0.84708 0.89115 0.88887 0.89709 0.75823 0.95026 0.95544 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 10.31 36.00 0.37 -0.57 16 2 C 0.13 1.94 7.27 -81.92 -0.60 1.35 16 3 N -0.29 -4.36 12.23 33.95 0.42 -3.95 16 4 N -0.31 -4.33 3.70 -6.41 -0.02 -4.36 16 5 C 0.15 1.73 6.25 -83.60 -0.52 1.21 16 6 C -0.13 -1.16 8.25 -39.39 -0.32 -1.48 16 7 C -0.10 -0.66 10.04 -39.61 -0.40 -1.06 16 8 C -0.12 -0.77 10.04 -39.55 -0.40 -1.17 16 9 C -0.10 -0.74 10.04 -39.61 -0.40 -1.14 16 10 C -0.11 -1.08 9.75 -39.40 -0.38 -1.46 16 11 C 0.14 1.97 6.85 -81.33 -0.56 1.41 16 12 C -0.10 -1.11 8.42 36.01 0.30 -0.80 16 13 C -0.28 -4.50 5.46 -104.96 -0.57 -5.07 16 14 C 0.44 7.37 6.32 -31.48 -0.20 7.17 16 15 O -0.41 -7.17 17.25 5.43 0.09 -7.08 16 16 C 0.46 9.10 7.86 -11.66 -0.09 9.01 16 17 O -0.52 -11.47 16.66 5.48 0.09 -11.38 16 18 N -0.67 -13.98 5.54 -61.96 -0.34 -14.32 16 19 C 0.22 5.23 4.50 -5.19 -0.02 5.20 16 20 C -0.55 -14.83 9.83 -34.44 -0.34 -15.17 16 21 H 0.08 2.34 7.84 -52.49 -0.41 1.93 16 22 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 23 N -0.89 -26.10 13.96 55.43 0.77 -25.32 16 24 Si 0.88 20.94 27.47 -169.99 -4.67 16.27 16 25 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.26 -6.13 6.54 56.52 0.37 -5.76 16 28 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.08 0.92 7.91 -51.93 -0.41 0.51 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.13 1.02 6.10 -52.49 -0.32 0.70 16 32 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 33 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 34 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 35 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 36 H 0.09 0.75 7.73 -51.93 -0.40 0.35 16 37 H 0.09 1.07 7.98 -51.93 -0.41 0.65 16 38 H 0.08 0.75 6.86 -51.93 -0.36 0.40 16 39 H 0.41 7.88 7.80 -40.82 -0.32 7.56 16 40 H 0.03 0.79 7.20 -51.93 -0.37 0.42 16 41 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16 42 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 368.03 15.07 5.55 5.55 Total: -1.00 -33.47 368.03 -7.45 -40.92 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -5.10 Total: 4.13 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -4.23 Total: -0.45 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: 0.82 Total: -47.95 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: 0.18 Total: -18.46 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.47 -7.45 -40.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348822274.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.961 kcal (2) G-P(sol) polarization free energy of solvation -33.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds