Wall clock time and date at job start Tue Mar 31 2020 14:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30370 * 125.98298 * 2 1 4 4 N 1.39899 * 109.06333 * 179.97438 * 3 2 1 5 5 C 1.40125 * 125.70968 * 179.73287 * 4 3 2 6 6 C 1.38865 * 120.06449 * 144.75427 * 5 4 3 7 7 C 1.38119 * 119.92434 * 179.70079 * 6 5 4 8 8 C 1.38283 * 120.07250 * 0.57177 * 7 6 5 9 9 C 1.38283 * 120.13335 * 359.72376 * 8 7 6 10 10 C 1.38110 * 120.07407 * 359.97438 * 9 8 7 11 11 C 1.34383 * 108.57542 * 0.02562 * 4 3 2 12 12 C 1.50704 * 126.34318 * 179.97438 * 11 4 3 13 13 C 1.38630 * 107.30498 * 359.97438 * 11 4 3 14 14 C 1.46897 * 126.48632 * 179.97438 * 13 11 4 15 15 O 1.21431 * 119.99985 * 93.20928 * 14 13 11 16 16 C 1.49293 * 120.00134 * 273.20468 * 14 13 11 17 17 O 1.21365 * 119.99864 * 5.45303 * 16 14 13 18 18 N 1.34780 * 120.00082 * 185.45178 * 16 14 13 19 19 C 1.46505 * 120.00036 * 180.02562 * 18 16 14 20 20 C 1.50696 * 109.46770 * 179.97438 * 19 18 16 21 21 H 1.07995 * 120.00541 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99730 * 179.97438 * 20 19 18 23 23 N 1.31510 * 120.00055 * 179.97438 * 22 20 19 24 24 Si 1.86806 * 119.99993 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.46871 * 89.99478 * 24 22 20 26 26 H 1.48493 * 109.47368 * 209.99343 * 24 22 20 27 27 H 1.48498 * 109.46835 * 329.99725 * 24 22 20 28 28 H 1.09006 * 109.47127 * 85.52958 * 1 2 3 29 29 H 1.09004 * 109.47313 * 205.52695 * 1 2 3 30 30 H 1.08996 * 109.47481 * 325.52821 * 1 2 3 31 31 H 1.07994 * 120.03593 * 359.97438 * 6 5 4 32 32 H 1.08001 * 119.96033 * 180.29585 * 7 6 5 33 33 H 1.07995 * 119.92803 * 179.74242 * 8 7 6 34 34 H 1.08001 * 119.96438 * 179.97438 * 9 8 7 35 35 H 1.07999 * 120.03808 * 180.02562 * 10 9 8 36 36 H 1.08999 * 109.46871 * 90.02545 * 12 11 4 37 37 H 1.09003 * 109.46735 * 210.02356 * 12 11 4 38 38 H 1.08996 * 109.47548 * 330.02067 * 12 11 4 39 39 H 0.96999 * 119.99595 * 359.97438 * 18 16 14 40 40 H 1.09000 * 109.46492 * 299.99405 * 19 18 16 41 41 H 1.09001 * 109.47183 * 59.99758 * 19 18 16 42 42 H 0.97005 * 119.99731 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2730 1.0549 0.0000 4 7 3.6114 0.6478 0.0006 5 6 4.7250 1.4983 -0.0045 6 6 5.8743 1.1438 0.6896 7 6 6.9725 1.9814 0.6775 8 6 6.9242 3.1774 -0.0151 9 6 5.7789 3.5359 -0.7021 10 6 4.6796 2.6999 -0.6990 11 6 3.6502 -0.6955 0.0004 12 6 4.8894 -1.5531 0.0003 13 6 2.3391 -1.1459 0.0003 14 6 1.8968 -2.5467 -0.0005 15 8 1.6579 -3.1085 1.0492 16 6 1.7408 -3.2796 -1.2918 17 8 2.0732 -2.7519 -2.3330 18 7 1.2309 -4.5271 -1.3013 19 6 1.0783 -5.2465 -2.5684 20 6 0.4913 -6.6092 -2.3048 21 1 0.2551 -6.9092 -1.2946 22 6 0.2548 -7.4725 -3.3535 23 7 -0.2570 -8.6619 -3.1234 24 14 0.6628 -6.9533 -5.1009 25 1 2.0596 -7.3435 -5.4199 26 1 -0.2663 -7.6231 -6.0460 27 1 0.5194 -5.4806 -5.2259 28 1 -0.3634 0.0801 -1.0246 29 1 -0.3634 -0.9274 0.4429 30 1 -0.3634 0.8472 0.5816 31 1 5.9110 0.2122 1.2345 32 1 7.8683 1.7040 1.2131 33 1 7.7827 3.8324 -0.0195 34 1 5.7440 4.4708 -1.2417 35 1 3.7856 2.9803 -1.2362 36 1 5.1878 -1.7604 1.0280 37 1 4.6818 -2.4915 -0.5141 38 1 5.6948 -1.0280 -0.5130 39 1 0.9656 -4.9489 -0.4690 40 1 0.4148 -4.6858 -3.2268 41 1 2.0532 -5.3569 -3.0432 42 1 -0.4230 -9.2694 -3.8612 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348822274.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:14 Heat of formation + Delta-G solvation = 15.462128 kcal Electronic energy + Delta-G solvation = -26629.002294 eV Core-core repulsion = 22768.298057 eV Total energy + Delta-G solvation = -3860.704237 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.00853 -41.33168 -39.98457 -39.43124 -36.36569 -35.47233 -34.45924 -33.60110 -31.97226 -31.45399 -30.37704 -29.29811 -28.44923 -26.51201 -24.43149 -23.73519 -23.33886 -22.05480 -20.87119 -20.77891 -19.42515 -18.79960 -18.27794 -17.65251 -17.23576 -16.90256 -16.80671 -16.49719 -16.10489 -15.73293 -15.31971 -15.25944 -15.04495 -14.82188 -14.61848 -14.48553 -14.43064 -14.16516 -14.01998 -13.88695 -13.56113 -13.35024 -13.20494 -13.11396 -12.89390 -12.70561 -12.50415 -12.20595 -11.93016 -11.87680 -11.68845 -11.00164 -10.92912 -10.70473 -10.15518 -10.07748 -10.03421 -9.30289 -8.39678 -6.48501 -0.26530 -0.26140 0.28844 0.78108 1.06628 1.18895 1.35152 1.37224 1.49194 1.83311 1.91634 2.28657 2.66118 2.95253 3.17878 3.29104 3.38093 3.66559 3.83330 3.86603 3.94481 4.08682 4.19022 4.38063 4.39054 4.40734 4.49508 4.56097 4.61067 4.66548 4.73140 4.81815 4.87161 4.96205 4.97552 5.15925 5.19263 5.26628 5.32393 5.36911 5.46746 5.59908 5.69764 6.04222 6.05246 6.37373 6.46990 6.60481 6.93054 7.18530 8.75091 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.019391 B = 0.002661 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.625122 B =10521.373838 C =10920.917624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.120 3.880 3 N -0.312 5.312 4 N -0.310 5.310 5 C 0.112 3.888 6 C -0.135 4.135 7 C -0.095 4.095 8 C -0.112 4.112 9 C -0.102 4.102 10 C -0.125 4.125 11 C 0.144 3.856 12 C -0.105 4.105 13 C -0.323 4.323 14 C 0.458 3.542 15 O -0.418 6.418 16 C 0.470 3.530 17 O -0.543 6.543 18 N -0.677 5.677 19 C 0.228 3.772 20 C -0.552 4.552 21 H 0.057 0.943 22 C 0.027 3.973 23 N -0.930 5.930 24 Si 0.939 3.061 25 H -0.262 1.262 26 H -0.274 1.274 27 H -0.255 1.255 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.143 0.857 32 H 0.165 0.835 33 H 0.162 0.838 34 H 0.155 0.845 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.412 0.588 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.477 25.147 8.034 30.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.047 4.047 3 N -0.131 5.131 4 N -0.083 5.083 5 C 0.023 3.977 6 C -0.155 4.155 7 C -0.113 4.113 8 C -0.130 4.130 9 C -0.120 4.120 10 C -0.145 4.145 11 C 0.015 3.985 12 C -0.163 4.163 13 C -0.335 4.335 14 C 0.326 3.674 15 O -0.287 6.287 16 C 0.252 3.748 17 O -0.422 6.422 18 N -0.328 5.328 19 C 0.105 3.895 20 C -0.590 4.590 21 H 0.075 0.925 22 C -0.173 4.173 23 N -0.568 5.568 24 Si 0.762 3.238 25 H -0.187 1.187 26 H -0.199 1.199 27 H -0.179 1.179 28 H 0.111 0.889 29 H 0.099 0.901 30 H 0.119 0.881 31 H 0.161 0.839 32 H 0.183 0.817 33 H 0.180 0.820 34 H 0.173 0.827 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.100 0.900 38 H 0.121 0.879 39 H 0.249 0.751 40 H 0.044 0.956 41 H 0.044 0.956 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 15.591 26.348 7.795 31.592 hybrid contribution -0.685 -1.492 -0.561 1.735 sum 14.906 24.855 7.234 29.872 Atomic orbital electron populations 1.20439 0.83993 1.04798 1.04671 1.22835 0.98157 0.88072 0.95635 1.77059 0.85818 1.22518 1.27748 1.45498 1.04755 1.03453 1.54591 1.17945 0.85182 0.92571 1.02048 1.21393 0.92325 1.02469 0.99311 1.21450 0.98016 0.93432 0.98425 1.21738 0.98690 0.96942 0.95668 1.21407 0.91925 0.99771 0.98903 1.21123 1.00526 0.93623 0.99225 1.21922 0.96532 0.84361 0.95701 1.20937 0.91562 0.98088 1.05678 1.20013 0.93655 0.93786 1.26067 1.21521 0.72238 0.86320 0.87298 1.90578 1.34736 1.68662 1.34707 1.21030 0.79991 0.82772 0.91020 1.90693 1.49769 1.67768 1.33921 1.46121 1.59918 1.14316 1.12420 1.19342 0.96479 0.90943 0.82698 1.21241 1.43685 0.98469 0.95616 0.92520 1.25624 0.93783 0.94404 1.03524 1.69987 1.44226 1.08478 1.34154 0.85832 0.79163 0.79692 0.79091 1.18710 1.19924 1.17915 0.88907 0.90122 0.88081 0.83903 0.81718 0.82017 0.82746 0.86254 0.86474 0.89992 0.87917 0.75148 0.95597 0.95620 0.91748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.89 10.31 71.24 0.73 -1.16 16 2 C 0.12 3.62 7.27 43.61 0.32 3.93 16 3 N -0.31 -9.49 12.23 -46.50 -0.57 -10.06 16 4 N -0.31 -8.54 3.70 -174.19 -0.64 -9.18 16 5 C 0.11 2.46 6.25 38.11 0.24 2.69 16 6 C -0.13 -2.06 8.25 22.39 0.18 -1.88 16 7 C -0.09 -0.92 10.04 22.25 0.22 -0.69 16 8 C -0.11 -0.99 10.04 22.29 0.22 -0.76 16 9 C -0.10 -1.26 10.04 22.25 0.22 -1.03 16 10 C -0.13 -2.44 9.75 22.39 0.22 -2.23 16 11 C 0.14 3.98 6.85 42.26 0.29 4.27 16 12 C -0.10 -2.08 8.42 71.24 0.60 -1.48 16 13 C -0.32 -10.25 5.46 -20.08 -0.11 -10.36 16 14 C 0.46 15.53 6.32 27.52 0.17 15.71 16 15 O -0.42 -14.51 17.25 -3.50 -0.06 -14.57 16 16 C 0.47 18.49 7.86 87.22 0.69 19.18 16 17 O -0.54 -23.99 16.66 -3.29 -0.05 -24.04 16 18 N -0.68 -28.34 5.54 -468.29 -2.59 -30.93 16 19 C 0.23 11.01 4.50 85.63 0.38 11.40 16 20 C -0.55 -30.43 9.83 25.60 0.25 -30.18 16 21 H 0.06 3.33 7.84 -2.91 -0.02 3.31 16 22 C 0.03 1.53 5.47 84.66 0.46 1.99 16 23 N -0.93 -55.32 13.96 21.45 0.30 -55.02 16 24 Si 0.94 42.95 27.47 68.60 1.88 44.84 16 25 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 26 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 27 H -0.26 -11.38 6.54 99.48 0.65 -10.73 16 28 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 29 H 0.08 1.86 7.91 -2.38 -0.02 1.84 16 30 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.14 1.82 6.10 -2.91 -0.02 1.80 16 32 H 0.17 0.55 8.06 -2.91 -0.02 0.53 16 33 H 0.16 0.39 8.06 -2.91 -0.02 0.37 16 34 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 35 H 0.12 2.59 8.06 -2.91 -0.02 2.56 16 36 H 0.12 1.67 7.73 -2.39 -0.02 1.65 16 37 H 0.08 1.82 7.98 -2.39 -0.02 1.80 16 38 H 0.10 1.64 6.86 -2.39 -0.02 1.62 16 39 H 0.41 16.26 7.80 -92.71 -0.72 15.54 16 40 H 0.03 1.29 7.20 -2.39 -0.02 1.28 16 41 H 0.03 1.26 7.57 -2.39 -0.02 1.24 16 42 H 0.27 15.10 8.31 -92.70 -0.77 14.33 16 Total: -1.00 -73.27 368.03 3.65 -69.62 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 0.29 Total: 19.96 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: 5.10 Total: 9.40 kcal Atomic # 7 Polarization: -101.69 SS G_CDS: -3.51 Total: -105.20 kcal Atomic # 8 Polarization: -38.50 SS G_CDS: -0.12 Total: -38.61 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 1.88 Total: 44.84 kcal Total: -73.27 3.65 -69.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348822274.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.081 kcal (2) G-P(sol) polarization free energy of solvation -73.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds