Wall clock time and date at job start Tue Mar 31 2020 14:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35057 * 125.53751 * 2 1 4 4 C 1.41110 * 108.23965 * 180.26078 * 3 2 1 5 5 N 1.33047 * 126.36972 * 179.97438 * 4 3 2 6 6 C 1.33707 * 120.00140 * 0.02867 * 5 4 3 7 7 O 1.21854 * 120.00195 * 359.97438 * 6 5 4 8 8 C 1.48123 * 119.99912 * 180.02562 * 6 5 4 9 9 C 1.39516 * 120.12289 * 359.72022 * 8 6 5 10 10 C 1.38019 * 119.90346 * 179.81860 * 9 8 6 11 11 C 1.38127 * 120.09367 * 0.41671 * 10 9 8 12 12 C 1.38741 * 120.26267 * 359.83479 * 11 10 9 13 13 C 1.37730 * 120.17157 * 359.95695 * 12 11 10 14 14 C 1.51106 * 107.26004 * 179.97438 * 12 11 10 15 15 O 1.43921 * 105.95670 * 17.71999 * 14 12 11 16 16 C 1.43934 * 104.96954 * 331.48893 * 15 14 12 17 17 N 1.37400 * 107.25388 * 0.02562 * 4 3 2 18 18 H 0.96993 * 126.35488 * 179.97438 * 17 4 3 19 19 N 1.36395 * 125.53138 * 180.30631 * 2 1 3 20 20 C 1.46497 * 125.85233 * 359.75758 * 19 2 1 21 21 C 1.50699 * 109.47292 * 85.00134 * 20 19 2 22 22 H 1.07999 * 119.99600 * 359.97438 * 21 20 19 23 23 C 1.37879 * 120.00096 * 179.97438 * 21 20 19 24 24 N 1.31518 * 119.99807 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 119.99879 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46864 * 90.00422 * 25 23 21 27 27 H 1.48505 * 109.47015 * 210.00186 * 25 23 21 28 28 H 1.48497 * 109.47384 * 329.99829 * 25 23 21 29 29 H 1.09007 * 109.47133 * 269.69771 * 1 2 3 30 30 H 1.09005 * 109.47182 * 29.68878 * 1 2 3 31 31 H 1.08996 * 109.47589 * 149.68978 * 1 2 3 32 32 H 1.07994 * 125.88148 * 0.23106 * 3 2 1 33 33 H 1.07996 * 120.04570 * 0.02562 * 9 8 6 34 34 H 1.07992 * 119.95294 * 180.23254 * 10 9 8 35 35 H 1.08000 * 120.09251 * 180.02562 * 13 12 11 36 36 H 1.09007 * 110.15516 * 136.84508 * 14 12 11 37 37 H 1.08999 * 110.15473 * 258.59234 * 14 12 11 38 38 H 1.08994 * 110.15518 * 147.63840 * 16 15 14 39 39 H 1.08997 * 110.15352 * 269.31834 * 16 15 14 40 40 H 1.09008 * 109.47204 * 204.99978 * 20 19 2 41 41 H 1.09000 * 109.47411 * 324.99688 * 20 19 2 42 42 H 0.96998 * 119.99641 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2919 1.0990 0.0000 4 6 3.6392 0.6794 -0.0061 5 7 4.7110 1.4677 -0.0085 6 6 4.5636 2.7966 -0.0044 7 8 3.4476 3.2858 0.0011 8 6 5.7569 3.6742 -0.0076 9 6 7.0359 3.1168 -0.0090 10 6 8.1446 3.9387 -0.0157 11 6 7.9893 5.3112 -0.0124 12 6 6.7200 5.8713 -0.0058 13 6 5.6060 5.0613 -0.0033 14 6 6.8923 7.3725 -0.0030 15 8 8.2451 7.6162 -0.4294 16 6 8.9815 6.4513 -0.0140 17 7 3.6381 -0.6946 -0.0103 18 1 4.4188 -1.2701 -0.0152 19 7 2.2996 -1.1100 -0.0059 20 6 1.8320 -2.4983 -0.0083 21 6 1.5494 -2.9308 -1.4240 22 1 1.7024 -2.2403 -2.2402 23 6 1.0955 -4.2079 -1.6772 24 7 0.8484 -4.5851 -2.9126 25 14 0.8315 -5.4022 -0.2654 26 1 -0.5600 -5.2745 0.2373 27 1 1.0604 -6.7900 -0.7417 28 1 1.7842 -5.0916 0.8305 29 1 -0.3634 -0.0054 1.0277 30 1 -0.3634 0.8928 -0.5090 31 1 -0.3634 -0.8871 -0.5186 32 1 1.9478 2.1226 0.0035 33 1 7.1581 2.0438 -0.0081 34 1 9.1350 3.5081 -0.0206 35 1 4.6186 5.4986 0.0015 36 1 6.1905 7.8324 -0.6989 37 1 6.7383 7.7663 1.0016 38 1 9.7881 6.2462 -0.7177 39 1 9.3859 6.6000 0.9872 40 1 2.6002 -3.1412 0.4215 41 1 0.9203 -2.5756 0.5841 42 1 0.5295 -5.4836 -3.0907 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348885061.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:54 Heat of formation + Delta-G solvation = 57.456539 kcal Electronic energy + Delta-G solvation = -26077.397710 eV Core-core repulsion = 22218.514487 eV Total energy + Delta-G solvation = -3858.883223 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.11080 -40.69666 -38.73588 -36.94763 -34.48308 -33.18821 -32.43611 -31.68833 -31.56279 -30.85271 -28.07438 -27.66785 -27.33867 -25.24504 -23.15866 -22.40841 -21.75777 -21.30397 -19.83093 -19.22522 -17.51495 -17.18953 -16.68025 -16.48035 -16.22330 -15.73378 -15.39328 -15.20005 -14.78704 -14.35867 -14.25318 -13.87766 -13.83946 -13.47329 -13.11998 -13.07315 -12.87864 -12.84976 -12.73152 -12.62105 -12.40203 -12.12740 -11.98793 -11.63787 -11.50834 -11.09420 -10.94369 -10.73977 -10.21519 -10.11108 -9.62718 -9.57829 -9.10818 -9.02175 -8.90098 -8.57461 -8.52876 -7.05447 -6.57680 -4.66828 0.82115 1.33560 1.61569 1.85498 2.83988 2.90984 2.95488 3.02575 3.56986 3.73283 3.90777 3.91821 4.14815 4.46205 4.56535 4.68763 4.76526 4.86218 4.89119 5.14291 5.17401 5.21503 5.38187 5.41497 5.48494 5.57012 5.57999 5.71501 5.71999 5.92612 5.93539 6.00772 6.08496 6.16749 6.17194 6.24833 6.43130 6.54673 6.58090 6.67697 6.85917 6.88619 7.28968 7.46957 7.73795 7.95505 8.13847 8.45673 8.94239 9.18374 10.53658 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.030017 B = 0.002180 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.571627 B =12838.577758 C =13331.071183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.195 3.805 3 C -0.329 4.329 4 C 0.475 3.525 5 N -0.692 5.692 6 C 0.533 3.467 7 O -0.578 6.578 8 C -0.089 4.089 9 C -0.057 4.057 10 C -0.111 4.111 11 C -0.123 4.123 12 C -0.151 4.151 13 C -0.047 4.047 14 C 0.095 3.905 15 O -0.364 6.364 16 C 0.091 3.909 17 N -0.464 5.464 18 H 0.446 0.554 19 N -0.337 5.337 20 C 0.227 3.773 21 C -0.564 4.564 22 H 0.086 0.914 23 C 0.085 3.915 24 N -0.874 5.874 25 Si 0.873 3.127 26 H -0.268 1.268 27 H -0.277 1.277 28 H -0.265 1.265 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.185 0.815 33 H 0.145 0.855 34 H 0.126 0.874 35 H 0.134 0.866 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.049 0.951 41 H 0.060 0.940 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.201 12.727 8.553 17.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.069 3.931 3 C -0.361 4.361 4 C 0.226 3.774 5 N -0.456 5.456 6 C 0.319 3.681 7 O -0.460 6.460 8 C -0.092 4.092 9 C -0.076 4.076 10 C -0.129 4.129 11 C -0.124 4.124 12 C -0.151 4.151 13 C -0.066 4.066 14 C 0.018 3.982 15 O -0.283 6.283 16 C 0.015 3.985 17 N -0.186 5.186 18 H 0.294 0.706 19 N -0.123 5.123 20 C 0.109 3.891 21 C -0.602 4.602 22 H 0.104 0.896 23 C -0.122 4.122 24 N -0.509 5.509 25 Si 0.698 3.302 26 H -0.193 1.193 27 H -0.202 1.202 28 H -0.190 1.190 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.202 0.798 33 H 0.163 0.837 34 H 0.144 0.856 35 H 0.152 0.848 36 H 0.115 0.885 37 H 0.094 0.906 38 H 0.114 0.886 39 H 0.094 0.906 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.443 12.342 8.304 17.104 hybrid contribution -0.311 -1.172 0.579 1.344 sum 8.132 11.170 8.883 16.425 Atomic orbital electron populations 1.20700 0.86172 1.05505 1.03642 1.21373 0.94587 0.85320 0.91864 1.22297 0.91135 1.00399 1.22258 1.19085 0.91639 0.82039 0.84668 1.68726 1.28058 1.04911 1.43900 1.18774 0.86853 0.85953 0.76472 1.90601 1.26605 1.79193 1.49642 1.19819 0.94090 0.92683 1.02598 1.21509 0.90755 1.00986 0.94321 1.20395 0.99296 0.91152 1.02096 1.21172 0.95501 0.94997 1.00694 1.20867 0.94031 0.96136 1.04076 1.20464 0.98138 0.91937 0.96093 1.21709 0.84662 0.91039 1.00758 1.89056 1.19717 1.38758 1.80719 1.21754 0.93714 0.82236 1.00799 1.44461 0.98640 1.05227 1.70250 0.70612 1.47429 0.92988 1.07597 1.64270 1.20351 0.96013 0.72397 1.00322 1.21200 1.48415 0.99979 0.90630 0.89635 1.24817 0.93977 0.97523 0.95877 1.69854 1.42387 1.19742 1.18900 0.86918 0.79597 0.81425 0.82249 1.19264 1.20206 1.18984 0.89750 0.88995 0.88797 0.79788 0.83699 0.85573 0.84783 0.88493 0.90617 0.88553 0.90568 0.93298 0.92205 0.91642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.34 9.92 36.00 0.36 -0.98 16 2 C 0.19 3.29 6.93 -81.70 -0.57 2.72 16 3 C -0.33 -6.07 9.41 -39.62 -0.37 -6.44 16 4 C 0.47 8.98 8.07 -155.25 -1.25 7.73 16 5 N -0.69 -13.23 9.67 -12.18 -0.12 -13.35 16 6 C 0.53 10.31 7.69 -12.68 -0.10 10.22 16 7 O -0.58 -12.14 13.28 5.05 0.07 -12.07 16 8 C -0.09 -1.45 5.88 -104.88 -0.62 -2.07 16 9 C -0.06 -0.80 9.59 -39.19 -0.38 -1.18 16 10 C -0.11 -1.30 10.03 -39.70 -0.40 -1.70 16 11 C -0.12 -1.45 6.33 -104.26 -0.66 -2.11 16 12 C -0.15 -1.91 6.31 -104.42 -0.66 -2.57 16 13 C -0.05 -0.69 9.59 -39.28 -0.38 -1.07 16 14 C 0.09 0.98 7.63 36.20 0.28 1.26 16 15 O -0.36 -4.18 11.72 -35.23 -0.41 -4.59 16 16 C 0.09 0.88 7.63 36.22 0.28 1.15 16 17 N -0.46 -7.98 7.38 31.33 0.23 -7.75 16 18 H 0.45 6.58 8.96 -182.56 -1.64 4.94 16 19 N -0.34 -6.03 3.63 -58.03 -0.21 -6.24 16 20 C 0.23 4.27 4.78 -5.20 -0.02 4.25 16 21 C -0.56 -13.30 9.94 -34.44 -0.34 -13.64 16 22 H 0.09 2.33 8.06 -52.49 -0.42 1.91 16 23 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 24 N -0.87 -23.36 13.96 55.43 0.77 -22.58 16 25 Si 0.87 17.44 27.47 -169.99 -4.67 12.77 16 26 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 27 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 28 H -0.27 -4.94 6.54 56.52 0.37 -4.57 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.09 1.34 7.81 -51.93 -0.41 0.93 16 32 H 0.19 3.53 5.77 -52.49 -0.30 3.22 16 33 H 0.15 1.98 7.55 -52.49 -0.40 1.58 16 34 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.13 1.92 7.65 -52.49 -0.40 1.52 16 36 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.05 0.89 7.20 -51.92 -0.37 0.51 16 41 H 0.06 1.03 7.32 -51.93 -0.38 0.65 16 42 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 358.57 15.07 5.40 5.40 Total: -1.00 -30.47 358.57 -10.31 -40.78 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -6.44 Total: 10.11 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -4.93 Total: -2.47 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: 0.68 Total: -49.93 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.35 Total: -16.66 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -4.67 Total: 12.77 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.47 -10.31 -40.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348885061.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.237 kcal (2) G-P(sol) polarization free energy of solvation -30.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds