Wall clock time and date at job start Tue Mar 31 2020 14:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35057 * 125.53751 * 2 1 4 4 C 1.41110 * 108.23965 * 180.26078 * 3 2 1 5 5 N 1.33047 * 126.36972 * 179.97438 * 4 3 2 6 6 C 1.33707 * 120.00140 * 0.02867 * 5 4 3 7 7 O 1.21854 * 120.00195 * 359.97438 * 6 5 4 8 8 C 1.48123 * 119.99912 * 180.02562 * 6 5 4 9 9 C 1.39516 * 120.12289 * 359.72022 * 8 6 5 10 10 C 1.38019 * 119.90346 * 179.81860 * 9 8 6 11 11 C 1.38127 * 120.09367 * 0.41671 * 10 9 8 12 12 C 1.38741 * 120.26267 * 359.83479 * 11 10 9 13 13 C 1.37730 * 120.17157 * 359.95695 * 12 11 10 14 14 C 1.51106 * 107.26004 * 179.97438 * 12 11 10 15 15 O 1.43921 * 105.95670 * 17.71999 * 14 12 11 16 16 C 1.43934 * 104.96954 * 331.48893 * 15 14 12 17 17 N 1.37400 * 107.25388 * 0.02562 * 4 3 2 18 18 H 0.96993 * 126.35488 * 179.97438 * 17 4 3 19 19 N 1.36395 * 125.53138 * 180.30631 * 2 1 3 20 20 C 1.46497 * 125.85233 * 359.75758 * 19 2 1 21 21 C 1.50699 * 109.47292 * 85.00134 * 20 19 2 22 22 H 1.07999 * 119.99600 * 359.97438 * 21 20 19 23 23 C 1.37879 * 120.00096 * 179.97438 * 21 20 19 24 24 N 1.31518 * 119.99807 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 119.99879 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46864 * 90.00422 * 25 23 21 27 27 H 1.48505 * 109.47015 * 210.00186 * 25 23 21 28 28 H 1.48497 * 109.47384 * 329.99829 * 25 23 21 29 29 H 1.09007 * 109.47133 * 269.69771 * 1 2 3 30 30 H 1.09005 * 109.47182 * 29.68878 * 1 2 3 31 31 H 1.08996 * 109.47589 * 149.68978 * 1 2 3 32 32 H 1.07994 * 125.88148 * 0.23106 * 3 2 1 33 33 H 1.07996 * 120.04570 * 0.02562 * 9 8 6 34 34 H 1.07992 * 119.95294 * 180.23254 * 10 9 8 35 35 H 1.08000 * 120.09251 * 180.02562 * 13 12 11 36 36 H 1.09007 * 110.15516 * 136.84508 * 14 12 11 37 37 H 1.08999 * 110.15473 * 258.59234 * 14 12 11 38 38 H 1.08994 * 110.15518 * 147.63840 * 16 15 14 39 39 H 1.08997 * 110.15352 * 269.31834 * 16 15 14 40 40 H 1.09008 * 109.47204 * 204.99978 * 20 19 2 41 41 H 1.09000 * 109.47411 * 324.99688 * 20 19 2 42 42 H 0.96998 * 119.99641 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2919 1.0990 0.0000 4 6 3.6392 0.6794 -0.0061 5 7 4.7110 1.4677 -0.0085 6 6 4.5636 2.7966 -0.0044 7 8 3.4476 3.2858 0.0011 8 6 5.7569 3.6742 -0.0076 9 6 7.0359 3.1168 -0.0090 10 6 8.1446 3.9387 -0.0157 11 6 7.9893 5.3112 -0.0124 12 6 6.7200 5.8713 -0.0058 13 6 5.6060 5.0613 -0.0033 14 6 6.8923 7.3725 -0.0030 15 8 8.2451 7.6162 -0.4294 16 6 8.9815 6.4513 -0.0140 17 7 3.6381 -0.6946 -0.0103 18 1 4.4188 -1.2701 -0.0152 19 7 2.2996 -1.1100 -0.0059 20 6 1.8320 -2.4983 -0.0083 21 6 1.5494 -2.9308 -1.4240 22 1 1.7024 -2.2403 -2.2402 23 6 1.0955 -4.2079 -1.6772 24 7 0.8484 -4.5851 -2.9126 25 14 0.8315 -5.4022 -0.2654 26 1 -0.5600 -5.2745 0.2373 27 1 1.0604 -6.7900 -0.7417 28 1 1.7842 -5.0916 0.8305 29 1 -0.3634 -0.0054 1.0277 30 1 -0.3634 0.8928 -0.5090 31 1 -0.3634 -0.8871 -0.5186 32 1 1.9478 2.1226 0.0035 33 1 7.1581 2.0438 -0.0081 34 1 9.1350 3.5081 -0.0206 35 1 4.6186 5.4986 0.0015 36 1 6.1905 7.8324 -0.6989 37 1 6.7383 7.7663 1.0016 38 1 9.7881 6.2462 -0.7177 39 1 9.3859 6.6000 0.9872 40 1 2.6002 -3.1412 0.4215 41 1 0.9203 -2.5756 0.5841 42 1 0.5295 -5.4836 -3.0907 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348885061.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:53 Heat of formation + Delta-G solvation = 37.698813 kcal Electronic energy + Delta-G solvation = -26078.254470 eV Core-core repulsion = 22218.514487 eV Total energy + Delta-G solvation = -3859.739982 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.52244 -41.64557 -40.06782 -37.99710 -36.04556 -34.82964 -33.80874 -32.98479 -32.55751 -32.17492 -29.12142 -28.91145 -28.73098 -26.36842 -24.57872 -23.74240 -22.80692 -22.47218 -21.17948 -20.53397 -19.30939 -18.59219 -17.78406 -17.44784 -17.24389 -16.96104 -16.71357 -16.56775 -16.23017 -15.73178 -15.30963 -15.23637 -14.93753 -14.72095 -14.48218 -14.37440 -14.22692 -13.90552 -13.86084 -13.73909 -13.51560 -13.35226 -13.18259 -12.93516 -12.62195 -12.58443 -12.26854 -11.92071 -11.86700 -11.19801 -11.06426 -11.01168 -10.92782 -10.39793 -10.02553 -9.92538 -9.57662 -8.53749 -8.42912 -6.58355 -0.37142 0.26773 0.33130 0.47963 1.37539 1.38812 1.46253 1.47454 2.23987 2.42949 2.56999 2.90051 2.94633 3.10930 3.17867 3.47779 3.60604 3.67799 3.94438 4.10314 4.19257 4.32135 4.38280 4.42933 4.44798 4.46160 4.58927 4.64881 4.72229 4.74512 4.79304 4.86361 4.89198 4.97788 5.06162 5.11952 5.22294 5.25376 5.33337 5.52383 5.67955 5.83752 5.88075 5.97349 6.08276 6.41917 6.51438 6.70392 7.07675 7.71876 8.72055 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.030017 B = 0.002180 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.571627 B =12838.577758 C =13331.071183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.203 3.797 3 C -0.347 4.347 4 C 0.458 3.542 5 N -0.697 5.697 6 C 0.519 3.481 7 O -0.607 6.607 8 C -0.120 4.120 9 C -0.062 4.062 10 C -0.104 4.104 11 C -0.119 4.119 12 C -0.157 4.157 13 C -0.059 4.059 14 C 0.095 3.905 15 O -0.378 6.378 16 C 0.091 3.909 17 N -0.459 5.459 18 H 0.455 0.545 19 N -0.343 5.343 20 C 0.232 3.768 21 C -0.563 4.563 22 H 0.032 0.968 23 C 0.026 3.974 24 N -0.933 5.933 25 Si 0.946 3.054 26 H -0.254 1.254 27 H -0.287 1.287 28 H -0.234 1.234 29 H 0.119 0.881 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.175 0.825 33 H 0.144 0.856 34 H 0.161 0.839 35 H 0.126 0.874 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.118 0.882 39 H 0.100 0.900 40 H 0.068 0.932 41 H 0.092 0.908 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.429 12.928 10.907 19.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.076 3.924 3 C -0.378 4.378 4 C 0.209 3.791 5 N -0.461 5.461 6 C 0.308 3.692 7 O -0.492 6.492 8 C -0.123 4.123 9 C -0.081 4.081 10 C -0.121 4.121 11 C -0.120 4.120 12 C -0.158 4.158 13 C -0.078 4.078 14 C 0.019 3.981 15 O -0.297 6.297 16 C 0.015 3.985 17 N -0.182 5.182 18 H 0.305 0.695 19 N -0.129 5.129 20 C 0.114 3.886 21 C -0.601 4.601 22 H 0.050 0.950 23 C -0.175 4.175 24 N -0.570 5.570 25 Si 0.767 3.233 26 H -0.178 1.178 27 H -0.213 1.213 28 H -0.157 1.157 29 H 0.137 0.863 30 H 0.125 0.875 31 H 0.102 0.898 32 H 0.192 0.808 33 H 0.161 0.839 34 H 0.179 0.821 35 H 0.144 0.856 36 H 0.124 0.876 37 H 0.113 0.887 38 H 0.136 0.864 39 H 0.118 0.882 40 H 0.086 0.914 41 H 0.109 0.891 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.698 12.558 10.676 19.124 hybrid contribution -0.633 -1.127 -0.240 1.315 sum 9.066 11.431 10.436 17.938 Atomic orbital electron populations 1.20884 0.83369 1.05694 1.05862 1.21924 0.96147 0.84409 0.89891 1.22224 0.91446 1.00497 1.23671 1.19324 0.92080 0.82691 0.85030 1.68799 1.28162 1.05012 1.44121 1.19388 0.87671 0.86327 0.75834 1.90563 1.27861 1.79564 1.51209 1.19758 0.93879 0.93021 1.05653 1.21559 0.90651 1.01314 0.94569 1.20688 0.99974 0.91038 1.00443 1.21607 0.95903 0.95687 0.98803 1.21133 0.93800 0.97558 1.03261 1.20427 0.98658 0.91648 0.97037 1.21826 0.84665 0.89415 1.02153 1.89048 1.20050 1.39460 1.81144 1.21986 0.93214 0.80494 1.02788 1.44457 0.98915 1.04833 1.70029 0.69526 1.47454 0.93327 1.07679 1.64395 1.20292 0.97836 0.72901 0.97561 1.21303 1.47789 0.99157 0.91848 0.94986 1.25795 0.93429 0.99611 0.98644 1.70030 1.44603 1.20434 1.21961 0.85754 0.80800 0.77635 0.79067 1.17771 1.21329 1.15726 0.86303 0.87531 0.89792 0.80810 0.83871 0.82098 0.85645 0.87597 0.88725 0.86412 0.88204 0.91386 0.89080 0.91705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.47 9.92 71.23 0.71 -1.76 16 2 C 0.20 6.75 6.93 41.12 0.28 7.03 16 3 C -0.35 -13.10 9.41 22.24 0.21 -12.89 16 4 C 0.46 17.77 8.07 133.90 1.08 18.85 16 5 N -0.70 -27.64 9.67 -311.19 -3.01 -30.64 16 6 C 0.52 21.10 7.69 87.04 0.67 21.77 16 7 O -0.61 -26.96 13.28 -4.84 -0.06 -27.02 16 8 C -0.12 -4.06 5.88 -20.03 -0.12 -4.18 16 9 C -0.06 -1.74 9.59 22.53 0.22 -1.52 16 10 C -0.10 -2.21 10.03 22.19 0.22 -1.98 16 11 C -0.12 -2.54 6.33 -19.63 -0.12 -2.67 16 12 C -0.16 -3.83 6.31 -19.74 -0.12 -3.95 16 13 C -0.06 -1.76 9.59 22.46 0.22 -1.55 16 14 C 0.10 1.81 7.63 71.36 0.54 2.35 16 15 O -0.38 -7.67 11.72 -148.98 -1.75 -9.42 16 16 C 0.09 1.43 7.63 71.37 0.54 1.98 16 17 N -0.46 -15.83 7.38 -54.80 -0.40 -16.23 16 18 H 0.46 13.35 8.96 -213.29 -1.91 11.44 16 19 N -0.34 -12.00 3.63 -337.51 -1.23 -13.23 16 20 C 0.23 8.27 4.78 85.63 0.41 8.68 16 21 C -0.56 -26.72 9.94 25.60 0.25 -26.47 16 22 H 0.03 1.83 8.06 -2.91 -0.02 1.80 16 23 C 0.03 1.28 5.47 84.65 0.46 1.74 16 24 N -0.93 -51.37 13.96 21.45 0.30 -51.07 16 25 Si 0.95 34.52 27.47 68.60 1.88 36.40 16 26 H -0.25 -8.68 7.11 99.48 0.71 -7.97 16 27 H -0.29 -10.95 7.11 99.48 0.71 -10.25 16 28 H -0.23 -7.34 6.54 99.48 0.65 -6.69 16 29 H 0.12 2.15 8.14 -2.38 -0.02 2.13 16 30 H 0.11 2.32 8.14 -2.38 -0.02 2.30 16 31 H 0.08 2.28 7.81 -2.39 -0.02 2.27 16 32 H 0.17 6.97 5.77 -2.91 -0.02 6.95 16 33 H 0.14 3.93 7.55 -2.91 -0.02 3.91 16 34 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 35 H 0.13 3.84 7.65 -2.91 -0.02 3.82 16 36 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.07 2.23 7.20 -2.38 -0.02 2.21 16 41 H 0.09 2.78 7.32 -2.39 -0.02 2.76 16 42 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 Total: -1.00 -70.16 358.57 0.29 -69.87 By element: Atomic # 1 Polarization: 36.80 SS G_CDS: -0.90 Total: 35.91 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: 5.45 Total: 5.43 kcal Atomic # 7 Polarization: -106.84 SS G_CDS: -4.34 Total: -111.18 kcal Atomic # 8 Polarization: -34.63 SS G_CDS: -1.81 Total: -36.44 kcal Atomic # 14 Polarization: 34.52 SS G_CDS: 1.88 Total: 36.40 kcal Total: -70.16 0.29 -69.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348885061.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.565 kcal (2) G-P(sol) polarization free energy of solvation -70.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds