Wall clock time and date at job start Tue Mar 31 2020 14:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38392 * 120.85548 * 2 1 4 4 C 1.38312 * 119.30528 * 180.02562 * 3 2 1 5 5 N 1.31959 * 121.08679 * 0.02562 * 4 3 2 6 6 C 1.31670 * 121.88074 * 359.65394 * 5 4 3 7 7 C 1.39586 * 120.55778 * 0.63163 * 6 5 4 8 8 C 1.47803 * 120.55876 * 179.67938 * 7 6 5 9 9 O 1.21559 * 119.99849 * 173.87263 * 8 7 6 10 10 N 1.34772 * 119.99900 * 353.86793 * 8 7 6 11 11 C 1.39493 * 119.99955 * 179.97438 * 10 8 7 12 12 N 1.32292 * 119.72963 * 0.02562 * 11 10 8 13 13 C 1.31950 * 121.68909 * 179.97438 * 12 11 10 14 14 C 1.38085 * 120.95960 * 359.97438 * 13 12 11 15 15 C 1.38784 * 119.35972 * 0.29846 * 14 13 12 16 16 C 1.38800 * 118.44253 * 359.45992 * 15 14 13 17 17 O 1.35981 * 120.49188 * 180.26616 * 16 15 14 18 18 C 1.42898 * 117.00393 * 0.25724 * 17 16 15 19 19 C 1.52996 * 109.47198 * 180.02562 * 18 17 16 20 20 C 1.50700 * 109.47203 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99956 * 359.97438 * 20 19 18 22 22 C 1.37877 * 120.00066 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99974 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00108 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46819 * 59.99996 * 24 22 20 26 26 H 1.48502 * 109.47121 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.46898 * 300.00273 * 24 22 20 28 28 H 1.08996 * 109.47130 * 263.69409 * 1 2 3 29 29 H 1.09003 * 109.46779 * 23.70065 * 1 2 3 30 30 H 1.09001 * 109.46514 * 143.69520 * 1 2 3 31 31 H 1.07996 * 120.34747 * 359.97438 * 3 2 1 32 32 H 1.07999 * 119.45703 * 179.97438 * 4 3 2 33 33 H 1.07995 * 119.71933 * 180.33587 * 6 5 4 34 34 H 0.96998 * 120.00494 * 0.02562 * 10 8 7 35 35 H 1.08000 * 119.52066 * 180.02562 * 13 12 11 36 36 H 1.08002 * 120.32323 * 180.02562 * 14 13 12 37 37 H 1.07998 * 120.78128 * 179.72276 * 15 14 13 38 38 H 1.09002 * 109.47025 * 300.00190 * 18 17 16 39 39 H 1.09000 * 109.47386 * 59.99713 * 18 17 16 40 40 H 1.09002 * 109.47093 * 299.99910 * 19 18 17 41 41 H 1.09000 * 109.47381 * 59.99471 * 19 18 17 42 42 H 0.97003 * 119.99717 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2168 1.1880 0.0000 4 6 3.5995 1.1506 -0.0005 5 7 4.2500 0.0025 -0.0016 6 6 3.6201 -1.1537 0.0046 7 6 2.2251 -1.2019 -0.0006 8 6 1.5180 -2.4998 -0.0008 9 8 0.3076 -2.5325 0.1070 10 7 2.2151 -3.6469 -0.1205 11 6 1.5478 -4.8719 -0.1201 12 7 0.2305 -4.9013 -0.0024 13 6 -0.4398 -6.0379 0.0020 14 6 0.2137 -7.2485 -0.1174 15 6 1.5962 -7.2665 -0.2375 16 6 2.2750 -6.0558 -0.2445 17 8 3.6290 -6.0246 -0.3655 18 6 4.2986 -7.2810 -0.4883 19 6 5.8053 -7.0460 -0.6124 20 6 6.5115 -8.3711 -0.7412 21 1 5.9425 -9.2891 -0.7347 22 6 7.8838 -8.4115 -0.8674 23 7 8.5767 -7.2937 -0.8747 24 14 8.7593 -10.0540 -1.0263 25 1 8.2669 -10.7623 -2.2350 26 1 10.2217 -9.8259 -1.1469 27 1 8.4851 -10.8795 0.1772 28 1 -0.3633 -0.1129 1.0214 29 1 -0.3633 0.9410 -0.4131 30 1 -0.3632 -0.8282 -0.6085 31 1 1.6966 2.1344 -0.0004 32 1 4.1558 2.0763 -0.0010 33 1 4.1875 -2.0725 0.0091 34 1 3.1810 -3.6209 -0.2062 35 1 -1.5152 -6.0211 0.0997 36 1 -0.3452 -8.1726 -0.1129 37 1 2.1310 -8.2004 -0.3278 38 1 4.0974 -7.8877 0.3946 39 1 3.9371 -7.8002 -1.3759 40 1 6.0068 -6.4392 -1.4952 41 1 6.1665 -6.5270 0.2754 42 1 9.5423 -7.3221 -0.9631 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358462731.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:36 Heat of formation + Delta-G solvation = 7.805665 kcal Electronic energy + Delta-G solvation = -26487.991341 eV Core-core repulsion = 22626.955094 eV Total energy + Delta-G solvation = -3861.036246 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.22739 -40.42554 -38.88462 -37.78635 -35.21199 -33.85864 -33.47639 -32.14471 -31.48264 -30.49465 -29.15837 -28.01979 -25.47281 -24.94289 -23.56676 -22.97743 -22.22039 -21.16303 -20.47990 -18.60769 -17.85029 -17.53078 -16.59601 -16.41061 -16.17988 -15.95018 -15.88515 -15.28549 -15.00342 -14.82717 -14.57727 -14.22454 -14.07992 -13.86501 -13.39083 -13.01629 -12.93516 -12.90682 -12.69096 -12.40707 -12.19728 -12.03102 -11.94938 -11.09030 -10.98223 -10.79771 -10.69743 -10.38038 -10.06278 -9.81660 -9.78340 -9.69486 -9.47918 -9.42158 -9.25376 -9.03802 -8.51827 -7.71647 -6.17419 -4.22770 0.37741 0.94173 1.22478 1.40503 2.74204 2.77473 3.24043 3.28489 3.29835 3.49019 3.59017 3.98603 4.02291 4.33590 4.37014 4.42968 4.43456 4.63408 4.76055 4.91271 5.04769 5.12072 5.19261 5.20606 5.29857 5.36957 5.42221 5.53220 5.58209 5.82669 5.87776 5.88129 6.00344 6.13250 6.14836 6.29732 6.34398 6.52212 6.57458 7.15312 7.32624 7.52197 7.61093 7.63555 7.83564 7.97389 8.14068 8.24878 8.82123 9.42200 10.93855 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011376 B = 0.003076 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.678026 B = 9099.963689 C =11529.275848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.020 3.980 3 C -0.187 4.187 4 C 0.124 3.876 5 N -0.489 5.489 6 C 0.143 3.857 7 C -0.194 4.194 8 C 0.556 3.444 9 O -0.470 6.470 10 N -0.646 5.646 11 C 0.327 3.673 12 N -0.443 5.443 13 C 0.075 3.925 14 C -0.158 4.158 15 C -0.148 4.148 16 C 0.070 3.930 17 O -0.316 6.316 18 C 0.066 3.934 19 C 0.027 3.973 20 C -0.530 4.530 21 H 0.058 0.942 22 C 0.062 3.938 23 N -0.888 5.888 24 Si 0.899 3.101 25 H -0.275 1.275 26 H -0.285 1.285 27 H -0.275 1.275 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.142 0.858 32 H 0.161 0.839 33 H 0.163 0.837 34 H 0.423 0.577 35 H 0.157 0.843 36 H 0.135 0.865 37 H 0.146 0.854 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.029 0.971 41 H 0.029 0.971 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.152 12.338 1.769 20.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.012 3.988 3 C -0.207 4.207 4 C -0.031 4.031 5 N -0.197 5.197 6 C -0.016 4.016 7 C -0.199 4.199 8 C 0.342 3.658 9 O -0.341 6.341 10 N -0.295 5.295 11 C 0.095 3.905 12 N -0.158 5.158 13 C -0.082 4.082 14 C -0.179 4.179 15 C -0.174 4.174 16 C 0.018 3.982 17 O -0.229 6.229 18 C -0.008 4.008 19 C -0.010 4.010 20 C -0.568 4.568 21 H 0.076 0.924 22 C -0.140 4.140 23 N -0.526 5.526 24 Si 0.726 3.274 25 H -0.201 1.201 26 H -0.211 1.211 27 H -0.201 1.201 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.118 0.882 31 H 0.159 0.841 32 H 0.178 0.822 33 H 0.180 0.820 34 H 0.262 0.738 35 H 0.174 0.826 36 H 0.153 0.847 37 H 0.164 0.836 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.205 13.432 1.903 21.134 hybrid contribution 0.711 -1.975 -0.210 2.110 sum -15.494 11.456 1.693 19.344 Atomic orbital electron populations 1.21116 0.89003 1.03650 1.04214 1.20485 0.97573 0.91208 0.89561 1.22073 0.95576 0.98609 1.04407 1.23032 0.91762 0.96543 0.91806 1.67754 1.40729 0.98220 1.13027 1.23132 0.90340 0.96953 0.91132 1.20827 0.95261 0.93953 1.09857 1.18114 0.87239 0.82953 0.77453 1.90816 1.12630 1.86107 1.44551 1.43315 1.11551 1.03256 1.71339 1.17720 0.88384 0.83310 1.01098 1.67603 1.04628 1.30001 1.13540 1.22407 1.00011 0.86666 0.99114 1.21909 0.94148 0.99715 1.02114 1.21622 0.95204 0.97432 1.03155 1.19595 0.85359 0.93045 1.00183 1.86100 1.13826 1.36232 1.86710 1.23415 0.96094 0.81600 0.99682 1.19126 0.84851 0.98236 0.98830 1.20898 0.91924 0.91870 1.52125 0.92408 1.24976 0.97466 0.96782 0.94821 1.69953 1.07199 1.26359 1.49040 0.86547 0.78528 0.83539 0.78775 1.20073 1.21068 1.20076 0.89883 0.91780 0.88174 0.84068 0.82164 0.82040 0.73811 0.82552 0.84725 0.83646 0.92889 0.92887 0.95309 0.95305 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 8.85 36.01 0.32 -0.88 16 2 C 0.02 0.22 5.95 -103.90 -0.62 -0.40 16 3 C -0.19 -1.61 9.78 -39.50 -0.39 -1.99 16 4 C 0.12 1.16 11.17 -17.47 -0.20 0.97 16 5 N -0.49 -5.95 10.35 -12.90 -0.13 -6.08 16 6 C 0.14 1.72 10.70 -17.12 -0.18 1.54 16 7 C -0.19 -2.39 5.89 -104.82 -0.62 -3.01 16 8 C 0.56 8.02 7.69 -12.35 -0.09 7.93 16 9 O -0.47 -7.65 11.75 5.31 0.06 -7.59 16 10 N -0.65 -9.46 5.34 -12.16 -0.06 -9.53 16 11 C 0.33 5.30 7.44 -154.50 -1.15 4.15 16 12 N -0.44 -7.10 7.87 -12.24 -0.10 -7.20 16 13 C 0.07 0.97 11.17 -17.56 -0.20 0.77 16 14 C -0.16 -1.89 10.10 -39.44 -0.40 -2.28 16 15 C -0.15 -2.08 9.14 -39.17 -0.36 -2.44 16 16 C 0.07 1.13 6.72 -38.91 -0.26 0.87 16 17 O -0.32 -5.72 9.38 -19.68 -0.18 -5.90 16 18 C 0.07 1.28 4.70 37.16 0.17 1.46 16 19 C 0.03 0.65 5.34 -27.88 -0.15 0.50 16 20 C -0.53 -14.09 9.11 -34.44 -0.31 -14.41 16 21 H 0.06 1.46 7.74 -52.48 -0.41 1.06 16 22 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 23 N -0.89 -25.53 13.29 55.43 0.74 -24.79 16 24 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.46 8.07 -51.93 -0.42 0.04 16 30 H 0.10 1.19 5.95 -51.93 -0.31 0.88 16 31 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.16 0.99 8.06 -52.49 -0.42 0.56 16 33 H 0.16 1.75 6.47 -52.49 -0.34 1.41 16 34 H 0.42 5.60 6.15 -40.82 -0.25 5.35 16 35 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 37 H 0.15 1.90 6.44 -52.49 -0.34 1.57 16 38 H 0.05 0.98 7.69 -51.93 -0.40 0.58 16 39 H 0.05 0.98 7.71 -51.93 -0.40 0.58 16 40 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 359.24 15.07 5.41 5.41 Total: -1.00 -32.47 359.24 -8.77 -41.24 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -4.96 Total: 4.44 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -4.53 Total: -5.62 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: 0.44 Total: -47.60 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -0.12 Total: -13.49 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.47 -8.77 -41.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358462731.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.042 kcal (2) G-P(sol) polarization free energy of solvation -32.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds