Wall clock time and date at job start Tue Mar 31 2020 14:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38392 * 120.85548 * 2 1 4 4 C 1.38312 * 119.30528 * 180.02562 * 3 2 1 5 5 N 1.31959 * 121.08679 * 0.02562 * 4 3 2 6 6 C 1.31670 * 121.88074 * 359.65394 * 5 4 3 7 7 C 1.39586 * 120.55778 * 0.63163 * 6 5 4 8 8 C 1.47803 * 120.55876 * 179.67938 * 7 6 5 9 9 O 1.21559 * 119.99849 * 173.87263 * 8 7 6 10 10 N 1.34772 * 119.99900 * 353.86793 * 8 7 6 11 11 C 1.39493 * 119.99955 * 179.97438 * 10 8 7 12 12 N 1.32292 * 119.72963 * 0.02562 * 11 10 8 13 13 C 1.31950 * 121.68909 * 179.97438 * 12 11 10 14 14 C 1.38085 * 120.95960 * 359.97438 * 13 12 11 15 15 C 1.38784 * 119.35972 * 0.29846 * 14 13 12 16 16 C 1.38800 * 118.44253 * 359.45992 * 15 14 13 17 17 O 1.35981 * 120.49188 * 180.26616 * 16 15 14 18 18 C 1.42898 * 117.00393 * 0.25724 * 17 16 15 19 19 C 1.52996 * 109.47198 * 180.02562 * 18 17 16 20 20 C 1.50700 * 109.47203 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99956 * 359.97438 * 20 19 18 22 22 C 1.37877 * 120.00066 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99974 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00108 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46819 * 59.99996 * 24 22 20 26 26 H 1.48502 * 109.47121 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.46898 * 300.00273 * 24 22 20 28 28 H 1.08996 * 109.47130 * 263.69409 * 1 2 3 29 29 H 1.09003 * 109.46779 * 23.70065 * 1 2 3 30 30 H 1.09001 * 109.46514 * 143.69520 * 1 2 3 31 31 H 1.07996 * 120.34747 * 359.97438 * 3 2 1 32 32 H 1.07999 * 119.45703 * 179.97438 * 4 3 2 33 33 H 1.07995 * 119.71933 * 180.33587 * 6 5 4 34 34 H 0.96998 * 120.00494 * 0.02562 * 10 8 7 35 35 H 1.08000 * 119.52066 * 180.02562 * 13 12 11 36 36 H 1.08002 * 120.32323 * 180.02562 * 14 13 12 37 37 H 1.07998 * 120.78128 * 179.72276 * 15 14 13 38 38 H 1.09002 * 109.47025 * 300.00190 * 18 17 16 39 39 H 1.09000 * 109.47386 * 59.99713 * 18 17 16 40 40 H 1.09002 * 109.47093 * 299.99910 * 19 18 17 41 41 H 1.09000 * 109.47381 * 59.99471 * 19 18 17 42 42 H 0.97003 * 119.99717 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2168 1.1880 0.0000 4 6 3.5995 1.1506 -0.0005 5 7 4.2500 0.0025 -0.0016 6 6 3.6201 -1.1537 0.0046 7 6 2.2251 -1.2019 -0.0006 8 6 1.5180 -2.4998 -0.0008 9 8 0.3076 -2.5325 0.1070 10 7 2.2151 -3.6469 -0.1205 11 6 1.5478 -4.8719 -0.1201 12 7 0.2305 -4.9013 -0.0024 13 6 -0.4398 -6.0379 0.0020 14 6 0.2137 -7.2485 -0.1174 15 6 1.5962 -7.2665 -0.2375 16 6 2.2750 -6.0558 -0.2445 17 8 3.6290 -6.0246 -0.3655 18 6 4.2986 -7.2810 -0.4883 19 6 5.8053 -7.0460 -0.6124 20 6 6.5115 -8.3711 -0.7412 21 1 5.9425 -9.2891 -0.7347 22 6 7.8838 -8.4115 -0.8674 23 7 8.5767 -7.2937 -0.8747 24 14 8.7593 -10.0540 -1.0263 25 1 8.2669 -10.7623 -2.2350 26 1 10.2217 -9.8259 -1.1469 27 1 8.4851 -10.8795 0.1772 28 1 -0.3633 -0.1129 1.0214 29 1 -0.3633 0.9410 -0.4131 30 1 -0.3632 -0.8282 -0.6085 31 1 1.6966 2.1344 -0.0004 32 1 4.1558 2.0763 -0.0010 33 1 4.1875 -2.0725 0.0091 34 1 3.1810 -3.6209 -0.2062 35 1 -1.5152 -6.0211 0.0997 36 1 -0.3452 -8.1726 -0.1129 37 1 2.1310 -8.2004 -0.3278 38 1 4.0974 -7.8877 0.3946 39 1 3.9371 -7.8002 -1.3759 40 1 6.0068 -6.4392 -1.4952 41 1 6.1665 -6.5270 0.2754 42 1 9.5423 -7.3221 -0.9631 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358462731.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:35 Heat of formation + Delta-G solvation = -11.909635 kcal Electronic energy + Delta-G solvation = -26488.846260 eV Core-core repulsion = 22626.955094 eV Total energy + Delta-G solvation = -3861.891166 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.28284 -41.42591 -39.98411 -39.05891 -36.29258 -35.46409 -34.72438 -33.11936 -32.76043 -32.01575 -30.35867 -28.85868 -27.17395 -25.95995 -24.79639 -24.10577 -23.17154 -22.68095 -21.64922 -19.77986 -19.09535 -18.69927 -18.04929 -17.44035 -17.34950 -17.19700 -17.02441 -16.50758 -16.45738 -15.99590 -15.77391 -15.26448 -15.21149 -14.83836 -14.55395 -14.35366 -14.17132 -13.82177 -13.71772 -13.62878 -13.48932 -13.32572 -12.98211 -12.81568 -12.72445 -12.45464 -11.91430 -11.72053 -11.63955 -11.45429 -11.35134 -10.64839 -10.62885 -10.59921 -10.41995 -10.27327 -10.12577 -8.88911 -8.25101 -6.38057 -0.51243 0.11926 0.17174 0.27767 1.42415 1.45237 1.53100 1.68609 1.75731 2.09914 2.44318 2.71234 2.89313 3.10020 3.12762 3.47103 3.56578 3.63616 3.74515 3.84565 3.87816 4.05477 4.12661 4.29061 4.32338 4.38944 4.45766 4.53173 4.64985 4.74309 4.76034 4.80158 4.94767 5.07005 5.15434 5.22602 5.31029 5.35886 5.50294 5.52118 5.58099 5.73031 6.06978 6.08598 6.31319 6.76728 6.79476 6.86610 7.15462 7.32062 8.87248 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011376 B = 0.003076 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.678026 B = 9099.963689 C =11529.275848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.009 3.991 3 C -0.172 4.172 4 C 0.123 3.877 5 N -0.516 5.516 6 C 0.133 3.867 7 C -0.209 4.209 8 C 0.554 3.446 9 O -0.493 6.493 10 N -0.649 5.649 11 C 0.309 3.691 12 N -0.469 5.469 13 C 0.075 3.925 14 C -0.142 4.142 15 C -0.148 4.148 16 C 0.042 3.958 17 O -0.331 6.331 18 C 0.084 3.916 19 C 0.029 3.971 20 C -0.546 4.546 21 H 0.072 0.928 22 C 0.004 3.996 23 N -0.929 5.929 24 Si 0.970 3.030 25 H -0.264 1.264 26 H -0.285 1.285 27 H -0.264 1.264 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.181 0.819 32 H 0.196 0.804 33 H 0.159 0.841 34 H 0.424 0.576 35 H 0.189 0.811 36 H 0.177 0.823 37 H 0.158 0.842 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.001 0.999 41 H 0.001 0.999 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.775 11.920 1.806 21.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.001 3.999 3 C -0.191 4.191 4 C -0.032 4.032 5 N -0.225 5.225 6 C -0.026 4.026 7 C -0.215 4.215 8 C 0.342 3.658 9 O -0.366 6.366 10 N -0.297 5.297 11 C 0.078 3.922 12 N -0.185 5.185 13 C -0.082 4.082 14 C -0.163 4.163 15 C -0.174 4.174 16 C -0.009 4.009 17 O -0.244 6.244 18 C 0.010 3.990 19 C -0.008 4.008 20 C -0.583 4.583 21 H 0.090 0.910 22 C -0.195 4.195 23 N -0.568 5.568 24 Si 0.794 3.206 25 H -0.189 1.189 26 H -0.211 1.211 27 H -0.189 1.189 28 H 0.099 0.901 29 H 0.112 0.888 30 H 0.093 0.907 31 H 0.199 0.801 32 H 0.213 0.787 33 H 0.176 0.824 34 H 0.264 0.736 35 H 0.206 0.794 36 H 0.194 0.806 37 H 0.175 0.825 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.841 13.015 1.942 22.169 hybrid contribution 1.082 -1.753 -0.209 2.071 sum -16.759 11.262 1.733 20.266 Atomic orbital electron populations 1.21047 0.88338 1.04210 1.03731 1.20784 0.98227 0.91391 0.89509 1.22453 0.95273 0.99238 1.02126 1.23678 0.92608 0.96744 0.90171 1.67774 1.41656 0.98992 1.14096 1.23114 0.90352 0.97313 0.91783 1.20764 0.95389 0.93644 1.11671 1.18465 0.87121 0.83477 0.76715 1.90787 1.13468 1.86523 1.45854 1.43411 1.11692 1.03349 1.71267 1.17921 0.88766 0.83708 1.01821 1.67665 1.04551 1.31757 1.14505 1.23091 1.01502 0.86311 0.97276 1.22309 0.93244 1.01013 0.99728 1.21918 0.96382 0.96891 1.02255 1.19762 0.84333 0.94232 1.02550 1.86027 1.15378 1.35310 1.87706 1.22963 0.93019 0.82310 1.00751 1.18945 0.88644 0.96997 0.96194 1.21372 0.92555 0.92988 1.51432 0.91028 1.25970 0.98510 1.00618 0.94395 1.70101 1.07477 1.28898 1.50338 0.85417 0.76973 0.78822 0.79357 1.18902 1.21075 1.18914 0.90149 0.88752 0.90662 0.80147 0.78739 0.82353 0.73645 0.79382 0.80557 0.82487 0.91684 0.91697 0.98080 0.98055 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.19 8.85 71.24 0.63 -1.56 16 2 C 0.01 0.19 5.95 -19.40 -0.12 0.08 16 3 C -0.17 -2.54 9.78 22.32 0.22 -2.33 16 4 C 0.12 2.08 11.17 84.69 0.95 3.03 16 5 N -0.52 -12.61 10.35 -194.73 -2.01 -14.63 16 6 C 0.13 3.39 10.70 85.04 0.91 4.30 16 7 C -0.21 -5.40 5.89 -19.99 -0.12 -5.51 16 8 C 0.55 16.95 7.69 86.77 0.67 17.62 16 9 O -0.49 -16.75 11.75 -3.90 -0.05 -16.80 16 10 N -0.65 -20.36 5.34 -310.68 -1.66 -22.02 16 11 C 0.31 10.32 7.44 133.01 0.99 11.31 16 12 N -0.47 -15.04 7.87 -192.63 -1.52 -16.56 16 13 C 0.08 1.80 11.17 84.64 0.95 2.75 16 14 C -0.14 -2.99 10.10 22.36 0.23 -2.76 16 15 C -0.15 -3.95 9.14 22.53 0.21 -3.75 16 16 C 0.04 1.38 6.72 22.71 0.15 1.53 16 17 O -0.33 -12.44 9.38 -93.33 -0.88 -13.32 16 18 C 0.08 3.29 4.70 71.98 0.34 3.63 16 19 C 0.03 1.50 5.34 29.85 0.16 1.66 16 20 C -0.55 -29.30 9.11 25.60 0.23 -29.07 16 21 H 0.07 3.56 7.74 -2.91 -0.02 3.53 16 22 C 0.00 0.22 5.46 84.65 0.46 0.68 16 23 N -0.93 -54.94 13.29 21.45 0.28 -54.65 16 24 Si 0.97 42.22 29.54 68.60 2.03 44.25 16 25 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 26 H -0.29 -12.30 7.11 99.48 0.71 -11.60 16 27 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 28 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.09 1.14 8.07 -2.39 -0.02 1.12 16 30 H 0.07 1.83 5.95 -2.39 -0.01 1.81 16 31 H 0.18 1.22 8.06 -2.91 -0.02 1.19 16 32 H 0.20 1.80 8.06 -2.91 -0.02 1.77 16 33 H 0.16 3.89 6.47 -2.91 -0.02 3.87 16 34 H 0.42 12.47 6.15 -92.71 -0.57 11.90 16 35 H 0.19 3.15 8.06 -2.91 -0.02 3.13 16 36 H 0.18 2.22 8.06 -2.91 -0.02 2.20 16 37 H 0.16 3.77 6.44 -2.91 -0.02 3.75 16 38 H 0.06 2.37 7.69 -2.39 -0.02 2.36 16 39 H 0.06 2.37 7.71 -2.39 -0.02 2.35 16 40 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 41 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 42 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -73.16 359.24 3.55 -69.61 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 0.50 Total: 22.50 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: 6.85 Total: 1.61 kcal Atomic # 7 Polarization: -102.95 SS G_CDS: -4.91 Total: -107.85 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -0.92 Total: -30.12 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -73.16 3.55 -69.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358462731.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.703 kcal (2) G-P(sol) polarization free energy of solvation -73.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds