Wall clock time and date at job start Tue Mar 31 2020 16:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50705 * 109.47160 * 2 1 4 4 C 1.38231 * 120.41827 * 264.98432 * 3 2 1 5 5 N 1.31852 * 120.76239 * 180.02562 * 4 3 2 6 6 C 1.31882 * 121.72596 * 359.96940 * 5 4 3 7 7 C 1.38187 * 120.76599 * 359.74556 * 6 5 4 8 8 C 1.38627 * 120.41960 * 85.00219 * 3 2 1 9 9 C 1.50696 * 120.78641 * 359.95544 * 8 3 2 10 10 H 1.09002 * 109.47688 * 325.00138 * 9 8 3 11 11 C 1.53007 * 109.47023 * 85.00325 * 9 8 3 12 12 N 1.46499 * 109.47212 * 204.99952 * 9 8 3 13 13 S 1.65601 * 120.00396 * 142.91959 * 12 9 8 14 14 O 1.42099 * 106.39867 * 310.62645 * 13 12 9 15 15 O 1.42092 * 106.40474 * 177.70545 * 13 12 9 16 16 N 1.65602 * 107.21633 * 64.16341 * 13 12 9 17 17 C 1.46497 * 120.00057 * 264.58152 * 16 13 12 18 18 C 1.46503 * 119.99912 * 84.58009 * 16 13 12 19 19 C 1.50698 * 109.46856 * 95.68675 * 18 16 13 20 20 H 1.07999 * 120.00596 * 355.07430 * 19 18 16 21 21 C 1.37880 * 119.99726 * 175.06755 * 19 18 16 22 22 N 1.31519 * 119.99903 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99867 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47252 * 59.99975 * 23 21 19 25 25 H 1.48505 * 109.47011 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47100 * 299.99823 * 23 21 19 27 27 H 1.08999 * 109.47439 * 60.00232 * 1 2 3 28 28 H 1.09001 * 109.46911 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46901 * 299.99521 * 1 2 3 30 30 H 1.09005 * 109.46901 * 240.00479 * 2 1 3 31 31 H 1.09001 * 109.47683 * 120.00246 * 2 1 3 32 32 H 1.08001 * 119.61788 * 0.02562 * 4 3 2 33 33 H 1.07999 * 119.62020 * 179.97438 * 6 5 4 34 34 H 1.07995 * 120.41768 * 180.25954 * 7 6 5 35 35 H 1.08997 * 109.46903 * 64.79965 * 11 9 8 36 36 H 1.09000 * 109.46965 * 184.79988 * 11 9 8 37 37 H 1.08998 * 109.46791 * 304.80166 * 11 9 8 38 38 H 0.97010 * 119.99747 * 322.92540 * 12 9 8 39 39 H 1.09000 * 109.47441 * 90.00217 * 17 16 13 40 40 H 1.09006 * 109.46977 * 210.00221 * 17 16 13 41 41 H 1.09000 * 109.47171 * 329.99769 * 17 16 13 42 42 H 1.08995 * 109.47251 * 215.69393 * 18 16 13 43 43 H 1.09009 * 109.46867 * 335.69229 * 18 16 13 44 44 H 0.97004 * 119.99357 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3638 2.0460 -1.1875 5 7 2.8045 3.2887 -1.1953 6 6 2.9457 3.9814 -0.0820 7 6 2.6285 3.4244 1.1422 8 6 2.1681 2.1173 1.1909 9 6 1.8167 1.4717 2.5064 10 1 0.9656 0.8049 2.3682 11 6 3.0154 0.6695 3.0171 12 7 1.4714 2.5083 3.4823 13 16 0.2603 2.2418 4.5799 14 8 -0.8546 1.7649 3.8392 15 8 0.2076 3.3958 5.4074 16 7 0.7457 0.9915 5.5514 17 6 0.3209 -0.3777 5.2501 18 6 1.5998 1.2548 6.7122 19 6 0.7443 1.3870 7.9457 20 1 -0.3322 1.3647 7.8613 21 6 1.3358 1.5364 9.1821 22 7 2.6467 1.5641 9.2849 23 14 0.2753 1.6996 10.7113 24 1 -0.5674 0.4862 10.8610 25 1 1.1468 1.8480 11.9045 26 1 -0.5964 2.8951 10.5838 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8932 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 2.2608 1.5103 -2.1196 33 1 3.3100 4.9971 -0.1280 34 1 2.7424 3.9983 2.0500 35 1 3.8397 1.3480 3.2364 36 1 2.7344 0.1340 3.9240 37 1 3.3258 -0.0449 2.2546 38 1 1.9521 3.3509 3.4855 39 1 1.0505 -0.8477 4.5906 40 1 0.2482 -0.9478 6.1764 41 1 -0.6521 -0.3566 4.7592 42 1 2.3003 0.4300 6.8424 43 1 2.1537 2.1802 6.5533 44 1 3.0628 1.6695 10.1548 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358607270.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:36 Heat of formation + Delta-G solvation = -72.476898 kcal Electronic energy + Delta-G solvation = -27000.163532 eV Core-core repulsion = 23271.089924 eV Total energy + Delta-G solvation = -3729.073608 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.53735 -38.40170 -37.77642 -37.18436 -36.89450 -35.46582 -34.49614 -32.55294 -30.88517 -30.26704 -29.62226 -26.76997 -25.69001 -25.04786 -24.20005 -22.68961 -22.04591 -20.49919 -19.14577 -18.58129 -18.40547 -17.98100 -17.24012 -17.06211 -16.43247 -16.25168 -15.85040 -15.34681 -15.19561 -15.02148 -14.90003 -14.57497 -14.40416 -14.25814 -14.06649 -13.93198 -13.51560 -13.34954 -13.30582 -13.18339 -13.04687 -13.00579 -12.92793 -12.68038 -12.47907 -12.39951 -12.30501 -12.08172 -11.93190 -11.76107 -11.73286 -10.90672 -10.58502 -10.44877 -10.32614 -9.85174 -9.78788 -8.19875 -6.31012 -0.37743 0.17496 0.24383 1.39865 1.42939 1.49974 1.97699 2.40622 2.58697 2.81992 3.11269 3.32725 3.47922 3.58709 3.76939 3.92980 3.93928 4.02180 4.13913 4.20588 4.36386 4.39218 4.51176 4.54310 4.66773 4.73579 4.79172 4.84846 4.88585 4.98329 4.99533 5.07530 5.11582 5.22027 5.27209 5.33326 5.43359 5.45459 5.49819 5.69938 5.77294 5.83778 6.04032 6.13156 6.77227 7.02052 7.37663 8.86990 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.022139 B = 0.003514 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.428061 B = 7965.877755 C = 8263.606924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.086 4.086 3 C -0.126 4.126 4 C 0.096 3.904 5 N -0.507 5.507 6 C 0.087 3.913 7 C -0.172 4.172 8 C -0.049 4.049 9 C 0.186 3.814 10 H 0.106 0.894 11 C -0.168 4.168 12 N -1.117 6.117 13 S 2.797 3.203 14 O -1.005 7.005 15 O -1.010 7.010 16 N -0.998 5.998 17 C 0.085 3.915 18 C 0.276 3.724 19 C -0.550 4.550 20 H 0.050 0.950 21 C 0.015 3.985 22 N -0.922 5.922 23 Si 0.952 3.048 24 H -0.264 1.264 25 H -0.277 1.277 26 H -0.279 1.279 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.039 0.961 30 H 0.102 0.898 31 H 0.085 0.915 32 H 0.179 0.821 33 H 0.175 0.825 34 H 0.142 0.858 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.419 0.581 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.034 0.966 43 H 0.014 0.986 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.845 -4.562 -20.162 20.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.124 4.124 3 C -0.129 4.129 4 C -0.061 4.061 5 N -0.216 5.216 6 C -0.069 4.069 7 C -0.192 4.192 8 C -0.058 4.058 9 C 0.079 3.921 10 H 0.123 0.877 11 C -0.227 4.227 12 N -0.880 5.880 13 S 2.805 3.195 14 O -0.989 6.989 15 O -0.994 6.994 16 N -0.840 5.840 17 C -0.060 4.060 18 C 0.152 3.848 19 C -0.589 4.589 20 H 0.068 0.932 21 C -0.185 4.185 22 N -0.562 5.562 23 Si 0.777 3.223 24 H -0.189 1.189 25 H -0.202 1.202 26 H -0.205 1.205 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.058 0.942 30 H 0.120 0.880 31 H 0.103 0.897 32 H 0.196 0.804 33 H 0.192 0.808 34 H 0.160 0.840 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.111 0.889 38 H 0.256 0.744 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.052 0.948 43 H 0.032 0.968 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.270 -3.859 -20.760 21.154 hybrid contribution -0.063 0.348 2.047 2.078 sum 1.208 -3.511 -18.713 19.078 Atomic orbital electron populations 1.21813 0.94644 1.02967 1.01673 1.20670 0.96082 0.90580 1.05073 1.20969 1.00139 0.98969 0.92809 1.23066 0.94197 0.90626 0.98206 1.67702 1.13557 1.08557 1.31742 1.23048 0.95975 1.00625 0.87279 1.22121 1.00921 0.95737 1.00419 1.20314 0.96370 0.94556 0.94600 1.19823 0.99559 0.88204 0.84501 0.87655 1.22369 0.97116 1.00574 1.02595 1.56041 1.57161 1.26353 1.48412 1.01228 0.73459 0.72534 0.72270 1.93508 1.50430 1.82053 1.72872 1.93582 1.86809 1.51036 1.68015 1.57426 1.66130 1.20821 1.39647 1.21644 1.00206 0.81856 1.02328 1.18579 0.88868 0.95910 0.81446 1.21825 0.93603 1.50280 0.93211 0.93207 1.25682 0.96240 0.94688 1.01882 1.69991 1.09856 1.50662 1.25691 0.85700 0.78862 0.78920 0.78790 1.18910 1.20178 1.20476 0.92333 0.90350 0.94211 0.87991 0.89702 0.80439 0.80800 0.84009 0.91717 0.91230 0.88944 0.74376 0.90529 0.90994 0.90724 0.94793 0.96785 0.92394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.75 71.98 0.70 -1.68 16 2 C -0.09 -1.15 5.41 29.85 0.16 -0.99 16 3 C -0.13 -2.30 5.15 -19.77 -0.10 -2.40 16 4 C 0.10 1.75 10.84 84.69 0.92 2.67 16 5 N -0.51 -11.04 10.36 -195.84 -2.03 -13.07 16 6 C 0.09 1.74 11.18 84.67 0.95 2.68 16 7 C -0.17 -3.56 9.37 22.36 0.21 -3.35 16 8 C -0.05 -1.04 5.09 -19.67 -0.10 -1.14 16 9 C 0.19 4.25 2.50 44.25 0.11 4.36 16 10 H 0.11 2.40 5.21 -2.39 -0.01 2.39 16 11 C -0.17 -3.39 9.31 71.98 0.67 -2.72 16 12 N -1.12 -31.42 5.37 -172.52 -0.93 -32.35 16 13 S 2.80 106.38 6.03 -56.49 -0.34 106.04 16 14 O -1.01 -39.31 16.04 -128.00 -2.05 -41.37 16 15 O -1.01 -48.11 17.30 -128.00 -2.21 -50.32 16 16 N -1.00 -38.86 3.05 -543.22 -1.66 -40.52 16 17 C 0.08 2.63 10.55 127.77 1.35 3.97 16 18 C 0.28 13.36 5.08 85.63 0.44 13.80 16 19 C -0.55 -30.54 9.38 25.60 0.24 -30.30 16 20 H 0.05 2.80 7.81 -2.91 -0.02 2.77 16 21 C 0.01 0.82 5.46 84.65 0.46 1.28 16 22 N -0.92 -52.86 13.29 21.45 0.28 -52.58 16 23 Si 0.95 44.06 29.54 68.60 2.03 46.08 16 24 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 25 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 26 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 27 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.04 0.82 6.87 -2.38 -0.02 0.80 16 30 H 0.10 0.88 8.06 -2.38 -0.02 0.86 16 31 H 0.08 1.05 5.87 -2.39 -0.01 1.03 16 32 H 0.18 2.19 8.06 -2.91 -0.02 2.17 16 33 H 0.17 2.59 8.06 -2.91 -0.02 2.56 16 34 H 0.14 2.60 6.21 -2.91 -0.02 2.58 16 35 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.07 1.55 6.62 -2.39 -0.02 1.53 16 37 H 0.09 1.40 6.97 -2.39 -0.02 1.38 16 38 H 0.42 10.53 6.71 -96.73 -0.65 9.88 16 39 H 0.08 1.78 6.90 -2.39 -0.02 1.77 16 40 H 0.07 2.34 8.07 -2.38 -0.02 2.32 16 41 H 0.07 2.18 7.00 -2.39 -0.02 2.17 16 42 H 0.03 1.67 8.11 -2.39 -0.02 1.65 16 43 H 0.01 0.73 7.74 -2.38 -0.02 0.71 16 44 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -72.80 368.38 -0.54 -73.33 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.37 Total: 18.55 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: 6.00 Total: -13.81 kcal Atomic # 7 Polarization: -134.18 SS G_CDS: -4.33 Total: -138.51 kcal Atomic # 8 Polarization: -87.42 SS G_CDS: -4.27 Total: -91.69 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: 106.38 SS G_CDS: -0.34 Total: 106.04 kcal Total: -72.80 -0.54 -73.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358607270.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.857 kcal (2) G-P(sol) polarization free energy of solvation -72.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds