Wall clock time and date at job start Tue Mar 31 2020 16:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.46942 * 2 1 4 4 C 1.38227 * 120.41859 * 279.12499 * 3 2 1 5 5 N 1.31854 * 120.76635 * 180.02562 * 4 3 2 6 6 C 1.31879 * 121.72181 * 359.97316 * 5 4 3 7 7 C 1.38177 * 120.77067 * 359.74347 * 6 5 4 8 8 C 1.38620 * 120.42013 * 99.14941 * 3 2 1 9 9 C 1.50693 * 120.79234 * 359.95345 * 8 3 2 10 10 H 1.09008 * 109.46856 * 39.27277 * 9 8 3 11 11 C 1.52997 * 109.47150 * 279.26901 * 9 8 3 12 12 N 1.46499 * 109.47662 * 159.26648 * 9 8 3 13 13 S 1.65599 * 120.00623 * 215.00186 * 12 9 8 14 14 O 1.42103 * 106.40038 * 311.46182 * 13 12 9 15 15 O 1.42092 * 106.40529 * 178.53861 * 13 12 9 16 16 N 1.65607 * 107.21488 * 64.99810 * 13 12 9 17 17 C 1.46495 * 119.99851 * 90.00704 * 16 13 12 18 18 C 1.46499 * 119.99931 * 269.99943 * 16 13 12 19 19 C 1.50702 * 109.46891 * 95.00294 * 18 16 13 20 20 H 1.07997 * 120.00011 * 0.02562 * 19 18 16 21 21 C 1.37880 * 119.99795 * 179.97438 * 19 18 16 22 22 N 1.31512 * 119.99957 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 120.00223 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.46821 * 90.00134 * 23 21 19 25 25 H 1.48496 * 109.47574 * 210.00216 * 23 21 19 26 26 H 1.48508 * 109.47261 * 330.00482 * 23 21 19 27 27 H 1.09003 * 109.47194 * 187.84631 * 1 2 3 28 28 H 1.08996 * 109.47027 * 307.84654 * 1 2 3 29 29 H 1.09001 * 109.47112 * 67.84513 * 1 2 3 30 30 H 1.09000 * 109.46978 * 240.00053 * 2 1 3 31 31 H 1.08994 * 109.46772 * 119.99884 * 2 1 3 32 32 H 1.08003 * 119.62201 * 0.02562 * 4 3 2 33 33 H 1.08002 * 119.61537 * 180.02562 * 6 5 4 34 34 H 1.07993 * 120.42537 * 180.25767 * 7 6 5 35 35 H 1.09007 * 109.47131 * 187.66840 * 11 9 8 36 36 H 1.08993 * 109.47121 * 307.67401 * 11 9 8 37 37 H 1.09002 * 109.46859 * 67.67445 * 11 9 8 38 38 H 0.97008 * 119.99376 * 35.00030 * 12 9 8 39 39 H 1.09004 * 109.47410 * 89.99594 * 17 16 13 40 40 H 1.09004 * 109.47110 * 209.99768 * 17 16 13 41 41 H 1.09004 * 109.47137 * 329.99047 * 17 16 13 42 42 H 1.09002 * 109.47339 * 215.00515 * 18 16 13 43 43 H 1.08997 * 109.47342 * 335.00461 * 18 16 13 44 44 H 0.97000 * 120.00007 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.0874 2.1437 -1.1769 5 7 2.5261 3.3870 -1.1849 6 6 2.9266 3.9881 -0.0815 7 6 2.8947 3.3304 1.1333 8 6 2.4455 2.0192 1.1802 9 6 2.4006 1.2654 2.4842 10 1 2.7051 0.2321 2.3172 11 6 0.9758 1.2937 3.0409 12 7 3.3122 1.8940 3.4434 13 16 4.1417 0.9610 4.5314 14 8 3.1874 0.0894 5.1222 15 8 4.9538 1.8502 5.2856 16 7 5.1776 0.0021 3.6654 17 6 6.5324 0.4717 3.3654 18 6 4.7392 -1.3158 3.1994 19 6 4.2319 -1.2052 1.7847 20 1 4.2360 -0.2489 1.2827 21 6 3.7634 -2.3250 1.1308 22 7 3.3211 -2.2286 -0.1040 23 14 3.7581 -3.9793 1.9982 24 1 2.4679 -4.1605 2.7109 25 1 3.9274 -5.0635 0.9977 26 1 4.8749 -4.0292 2.9759 27 1 -0.3634 -1.0181 0.1403 28 1 -0.3633 0.6305 0.8115 29 1 -0.3633 0.3875 -0.9518 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.7673 1.6847 -2.1007 33 1 3.2793 5.0079 -0.1272 34 1 3.2201 3.8294 2.0341 35 1 0.9694 0.8689 4.0448 36 1 0.6213 2.3236 3.0798 37 1 0.3216 0.7084 2.3947 38 1 3.4299 2.8569 3.4412 39 1 7.2081 0.1664 4.1644 40 1 6.8663 0.0394 2.4221 41 1 6.5309 1.5589 3.2863 42 1 5.5788 -2.0102 3.2311 43 1 3.9403 -1.6819 3.8442 44 1 2.9919 -3.0165 -0.5641 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358607274.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:42 Heat of formation + Delta-G solvation = -39.207466 kcal Electronic energy + Delta-G solvation = -28377.244390 eV Core-core repulsion = 24649.613453 eV Total energy + Delta-G solvation = -3727.630937 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.12996 -36.90692 -36.30027 -35.66124 -35.34269 -34.01333 -32.58664 -31.14358 -29.34711 -29.02159 -28.50934 -25.25812 -24.01669 -23.87666 -22.04056 -21.41027 -20.31439 -18.95946 -17.75598 -17.07804 -16.86631 -16.53969 -15.87350 -15.46291 -14.76674 -14.59287 -14.25714 -14.05724 -13.74858 -13.61022 -13.23682 -13.21218 -13.03765 -12.74353 -12.55919 -12.49316 -12.18166 -11.97911 -11.88896 -11.66301 -11.54593 -11.49595 -11.28307 -11.06374 -10.89551 -10.77748 -10.58719 -10.50417 -10.31033 -10.10326 -9.69043 -9.38931 -8.99251 -8.94474 -8.71632 -8.37122 -8.19795 -6.29670 -4.32210 1.16456 1.55062 1.69373 3.17186 3.24706 3.29791 3.40040 4.03997 4.20665 4.22976 4.81690 4.87493 4.92149 4.98074 5.20518 5.37232 5.40371 5.49254 5.63099 5.67436 5.72084 5.84774 5.91786 5.96057 6.02995 6.05127 6.11971 6.17354 6.29164 6.31643 6.36512 6.43080 6.56007 6.66093 6.73491 6.79714 7.00121 7.07725 7.16190 7.16881 7.34870 7.42266 7.53654 8.25717 8.35967 8.69545 9.28492 10.76651 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.009813 B = 0.007895 C = 0.005440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2852.549513 B = 3545.912988 C = 5145.967559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.091 4.091 4 C 0.095 3.905 5 N -0.491 5.491 6 C 0.078 3.922 7 C -0.170 4.170 8 C -0.033 4.033 9 C 0.165 3.835 10 H 0.154 0.846 11 C -0.169 4.169 12 N -1.123 6.123 13 S 2.788 3.212 14 O -0.979 6.979 15 O -0.999 6.999 16 N -0.992 5.992 17 C 0.107 3.893 18 C 0.207 3.793 19 C -0.555 4.555 20 H 0.090 0.910 21 C 0.084 3.916 22 N -0.874 5.874 23 Si 0.865 3.135 24 H -0.271 1.271 25 H -0.285 1.285 26 H -0.265 1.265 27 H 0.056 0.944 28 H 0.048 0.952 29 H 0.044 0.956 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.150 0.850 33 H 0.146 0.854 34 H 0.125 0.875 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.404 0.596 39 H 0.045 0.955 40 H 0.076 0.924 41 H 0.055 0.945 42 H 0.038 0.962 43 H 0.044 0.956 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.269 6.535 1.462 7.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.127 4.127 3 C -0.094 4.094 4 C -0.062 4.062 5 N -0.200 5.200 6 C -0.079 4.079 7 C -0.190 4.190 8 C -0.043 4.043 9 C 0.059 3.941 10 H 0.171 0.829 11 C -0.228 4.228 12 N -0.882 5.882 13 S 2.796 3.204 14 O -0.962 6.962 15 O -0.983 6.983 16 N -0.834 5.834 17 C -0.040 4.040 18 C 0.084 3.916 19 C -0.593 4.593 20 H 0.108 0.892 21 C -0.121 4.121 22 N -0.510 5.510 23 Si 0.691 3.309 24 H -0.197 1.197 25 H -0.211 1.211 26 H -0.190 1.190 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.117 0.883 31 H 0.125 0.875 32 H 0.167 0.833 33 H 0.164 0.836 34 H 0.142 0.858 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.238 0.762 39 H 0.064 0.936 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.056 0.944 43 H 0.062 0.938 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.429 6.679 1.475 7.258 hybrid contribution 0.209 -0.819 0.564 1.016 sum -2.220 5.860 2.039 6.590 Atomic orbital electron populations 1.21885 0.96659 1.01325 1.00641 1.20868 0.93394 0.90309 1.08098 1.20936 0.97659 0.98173 0.92587 1.22583 0.96232 0.89797 0.97592 1.67584 1.10645 1.11011 1.30769 1.22478 0.97675 0.99627 0.88070 1.21785 1.02728 0.95317 0.99210 1.20257 0.95318 0.93529 0.95180 1.20376 0.89818 1.00046 0.83830 0.82927 1.22410 0.95834 1.01892 1.02615 1.56160 1.59114 1.19467 1.53431 1.01689 0.72903 0.72571 0.73255 1.93569 1.61554 1.66129 1.74994 1.93555 1.69226 1.66236 1.69285 1.57388 1.23390 1.29687 1.72890 1.21238 0.82816 0.98411 1.01501 1.19683 0.96320 0.79547 0.96080 1.21524 1.43028 0.97641 0.97126 0.89241 1.24776 0.94212 0.98438 0.94673 1.69879 1.40561 1.29978 1.10602 0.87014 0.79604 0.84278 0.79968 1.19680 1.21062 1.18979 0.92535 0.93273 0.93664 0.88266 0.87458 0.83273 0.83639 0.85769 0.90832 0.93052 0.90704 0.76190 0.93642 0.90562 0.92585 0.94432 0.93782 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.53 37.16 0.35 -1.86 16 2 C -0.09 -1.60 4.47 -27.88 -0.12 -1.72 16 3 C -0.09 -1.58 5.14 -104.49 -0.54 -2.12 16 4 C 0.09 1.59 10.89 -17.55 -0.19 1.40 16 5 N -0.49 -8.22 10.36 -13.25 -0.14 -8.35 16 6 C 0.08 1.16 11.18 -17.55 -0.20 0.96 16 7 C -0.17 -2.53 9.38 -39.44 -0.37 -2.90 16 8 C -0.03 -0.56 5.07 -104.32 -0.53 -1.09 16 9 C 0.17 2.85 2.14 -69.09 -0.15 2.70 16 10 H 0.15 3.05 2.76 -51.92 -0.14 2.91 16 11 C -0.17 -2.63 9.46 37.16 0.35 -2.28 16 12 N -1.12 -18.12 5.37 -5.88 -0.03 -18.15 16 13 S 2.79 51.91 6.01 -107.50 -0.65 51.26 16 14 O -0.98 -20.63 15.89 -57.17 -0.91 -21.54 16 15 O -1.00 -19.52 17.21 -57.17 -0.98 -20.51 16 16 N -0.99 -18.83 3.23 -123.05 -0.40 -19.23 16 17 C 0.11 1.73 10.31 59.84 0.62 2.35 16 18 C 0.21 4.42 4.35 -5.19 -0.02 4.40 16 19 C -0.55 -12.73 6.70 -34.44 -0.23 -12.96 16 20 H 0.09 2.19 7.16 -52.49 -0.38 1.81 16 21 C 0.08 1.99 4.88 -17.82 -0.09 1.90 16 22 N -0.87 -20.93 11.13 55.43 0.62 -20.31 16 23 Si 0.86 18.77 27.47 -169.99 -4.67 14.10 16 24 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.27 -5.68 6.54 56.52 0.37 -5.31 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.69 5.90 -51.93 -0.31 0.39 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.10 1.95 7.03 -51.93 -0.37 1.59 16 31 H 0.11 2.19 3.87 -51.93 -0.20 1.99 16 32 H 0.15 2.24 8.06 -52.48 -0.42 1.82 16 33 H 0.15 1.71 8.06 -52.49 -0.42 1.28 16 34 H 0.12 1.53 6.09 -52.49 -0.32 1.21 16 35 H 0.07 1.19 7.58 -51.93 -0.39 0.80 16 36 H 0.05 0.71 8.13 -51.93 -0.42 0.28 16 37 H 0.07 1.12 5.06 -51.93 -0.26 0.86 16 38 H 0.40 5.47 6.59 -34.47 -0.23 5.24 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 41 H 0.06 0.82 7.79 -51.93 -0.40 0.42 16 42 H 0.04 0.80 7.16 -51.93 -0.37 0.42 16 43 H 0.04 0.98 6.34 -51.93 -0.33 0.65 16 44 H 0.27 6.19 8.31 -40.82 -0.34 5.86 16 LS Contribution 349.32 15.07 5.26 5.26 Total: -1.00 -27.38 349.32 -8.83 -36.21 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -5.82 Total: 12.47 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: -1.11 Total: -11.22 kcal Atomic # 7 Polarization: -66.09 SS G_CDS: 0.05 Total: -66.04 kcal Atomic # 8 Polarization: -40.15 SS G_CDS: -1.89 Total: -42.04 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -4.67 Total: 14.10 kcal Atomic # 16 Polarization: 51.91 SS G_CDS: -0.65 Total: 51.26 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -27.38 -8.83 -36.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358607274.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.996 kcal (2) G-P(sol) polarization free energy of solvation -27.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds