Wall clock time and date at job start Tue Mar 31 2020 14:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.36731 * 119.84757 * 2 1 4 4 C 1.40232 * 118.83842 * 180.27322 * 3 2 1 5 5 N 1.34014 * 120.74920 * 179.72892 * 4 3 2 6 6 C 1.32527 * 119.99917 * 175.07842 * 5 4 3 7 7 O 1.21667 * 120.00295 * 64.77581 * 6 5 4 8 8 C 1.50700 * 119.99506 * 244.76835 * 6 5 4 9 9 C 1.53004 * 109.46910 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.47171 * 305.00014 * 9 8 6 11 11 C 1.50692 * 109.47194 * 65.00334 * 9 8 6 12 12 H 1.08007 * 119.99961 * 34.97906 * 11 9 8 13 13 C 1.37880 * 120.00101 * 214.97614 * 11 9 8 14 14 N 1.31510 * 120.00072 * 5.00465 * 13 11 9 15 15 Si 1.86805 * 119.99988 * 185.00546 * 13 11 9 16 16 H 1.48500 * 109.47156 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47014 * 119.99868 * 15 13 11 18 18 H 1.48498 * 109.46856 * 240.00181 * 15 13 11 19 19 C 1.50706 * 109.46992 * 185.00405 * 9 8 6 20 20 C 1.38229 * 119.99999 * 294.75362 * 19 9 8 21 21 C 1.38232 * 120.00162 * 179.78887 * 20 19 9 22 22 C 1.38242 * 119.99875 * 0.44207 * 21 20 19 23 23 C 1.38233 * 119.99437 * 359.81268 * 22 21 20 24 24 C 1.38231 * 120.00676 * 359.97438 * 23 22 21 25 25 N 1.37139 * 118.49910 * 359.50269 * 4 3 2 26 26 H 0.97003 * 120.22160 * 180.22178 * 25 4 3 27 27 C 1.35723 * 119.54971 * 0.49830 * 25 4 3 28 28 O 1.34854 * 119.40986 * 179.76103 * 27 25 4 29 29 N 1.31629 * 121.17865 * 359.74656 * 27 25 4 30 30 H 1.09000 * 109.47064 * 90.00087 * 1 2 3 31 31 H 1.09002 * 109.47569 * 209.99916 * 1 2 3 32 32 H 1.08997 * 109.47317 * 329.99721 * 1 2 3 33 33 H 1.07998 * 120.57878 * 359.97438 * 3 2 1 34 34 H 1.08996 * 109.47711 * 300.00437 * 8 6 5 35 35 H 1.09008 * 109.46945 * 60.00333 * 8 6 5 36 36 H 0.97002 * 120.00090 * 179.97438 * 14 13 11 37 37 H 1.08007 * 119.99815 * 0.02562 * 20 19 9 38 38 H 1.07996 * 120.00381 * 180.27128 * 21 20 19 39 39 H 1.07995 * 120.00013 * 179.83286 * 22 21 20 40 40 H 1.08005 * 119.99488 * 180.02562 * 23 22 21 41 41 H 1.07994 * 120.00237 * 179.97438 * 24 23 22 42 42 H 0.96694 * 117.00207 * 269.98222 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1874 1.1859 0.0000 4 6 3.5895 1.1613 -0.0059 5 7 4.2948 2.3007 -0.0115 6 6 5.6163 2.2625 0.0815 7 8 6.2741 1.7514 -0.8053 8 6 6.3042 2.8524 1.2856 9 6 7.8177 2.6786 1.1443 10 1 8.0492 1.6256 0.9839 11 6 8.3085 3.4853 -0.0301 12 1 7.8470 4.4331 -0.2649 13 6 9.3468 3.0134 -0.8050 14 7 9.8435 1.8165 -0.5807 15 14 10.0480 4.0742 -2.1734 16 1 9.3203 5.3679 -2.2192 17 1 11.4886 4.3261 -1.9156 18 1 9.8930 3.3722 -3.4727 19 6 8.4978 3.1566 2.4014 20 6 8.4392 4.4919 2.7540 21 6 9.0592 4.9295 3.9093 22 6 9.7457 4.0334 4.7073 23 6 9.8087 2.6991 4.3519 24 6 9.1849 2.2606 3.1989 25 7 4.2226 -0.0553 -0.0009 26 1 5.1915 -0.1015 -0.0015 27 6 3.4842 -1.1941 -0.0008 28 8 4.1096 -2.3888 -0.0008 29 7 2.1685 -1.1532 -0.0004 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 1.6544 2.1252 -0.0004 34 1 6.0658 3.9136 1.3568 35 1 5.9619 2.3419 2.1859 36 1 10.5737 1.4844 -1.1260 37 1 7.9056 5.1925 2.1287 38 1 9.0097 5.9720 4.1871 39 1 10.2324 4.3758 5.6085 40 1 10.3447 1.9989 4.9756 41 1 9.2346 1.2182 2.9211 42 1 4.3129 -2.7779 -0.8624 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361840572.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:27 Heat of formation + Delta-G solvation = 20.151793 kcal Electronic energy + Delta-G solvation = -27045.589035 eV Core-core repulsion = 23185.088157 eV Total energy + Delta-G solvation = -3860.500878 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.68424 -39.15265 -38.30677 -37.86239 -35.61439 -33.99334 -33.38247 -31.50954 -31.04520 -30.03450 -29.20461 -28.46336 -25.64005 -24.19389 -23.54254 -22.41161 -21.62960 -20.35527 -19.55060 -19.18847 -18.59561 -17.42420 -16.58188 -16.45841 -16.11254 -15.56894 -14.95820 -14.54162 -14.42505 -14.19200 -14.09303 -14.00669 -13.76605 -13.35232 -13.14357 -12.60952 -12.56384 -12.43902 -12.35205 -12.09107 -11.83871 -11.61778 -11.32423 -10.90709 -10.79975 -10.54935 -10.46713 -10.40083 -10.27968 -10.08936 -9.99892 -9.40326 -9.07872 -8.78173 -8.35281 -8.07141 -7.79593 -7.60231 -5.95315 -3.93617 0.29839 1.29888 1.97916 2.26258 2.31922 2.92955 3.18022 3.35419 3.42322 3.46241 3.47055 4.12955 4.32192 4.50546 4.71698 4.86317 5.04227 5.14291 5.30571 5.40712 5.46906 5.58216 5.64502 5.71426 5.82480 5.85423 5.97031 6.13397 6.15731 6.25481 6.30472 6.39407 6.54214 6.60071 6.85512 6.91852 7.01581 7.12617 7.28620 7.42352 7.50405 7.52383 7.86589 7.92540 7.97299 8.03065 8.38577 8.78403 9.06626 9.67651 11.14965 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011726 B = 0.003672 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.207049 B = 7623.981727 C = 8636.656399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.183 3.817 3 C -0.223 4.223 4 C 0.460 3.540 5 N -0.622 5.622 6 C 0.484 3.516 7 O -0.476 6.476 8 C -0.123 4.123 9 C 0.074 3.926 10 H 0.072 0.928 11 C -0.491 4.491 12 H 0.052 0.948 13 C 0.078 3.922 14 N -0.883 5.883 15 Si 0.885 3.115 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.286 1.286 19 C -0.025 4.025 20 C -0.112 4.112 21 C -0.131 4.131 22 C -0.154 4.154 23 C -0.128 4.128 24 C -0.124 4.124 25 N -0.634 5.634 26 H 0.428 0.572 27 C 0.584 3.416 28 O -0.470 6.470 29 N -0.547 5.547 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.163 0.837 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.257 0.743 37 H 0.115 0.885 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.112 0.888 42 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.291 -6.186 4.276 17.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.060 3.940 3 C -0.249 4.249 4 C 0.203 3.797 5 N -0.368 5.368 6 C 0.272 3.728 7 O -0.347 6.347 8 C -0.163 4.163 9 C 0.055 3.945 10 H 0.090 0.910 11 C -0.528 4.528 12 H 0.070 0.930 13 C -0.125 4.125 14 N -0.521 5.521 15 Si 0.713 3.287 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.212 1.212 19 C -0.025 4.025 20 C -0.130 4.130 21 C -0.149 4.149 22 C -0.173 4.173 23 C -0.146 4.146 24 C -0.142 4.142 25 N -0.273 5.273 26 H 0.270 0.730 27 C 0.281 3.719 28 O -0.275 6.275 29 N -0.283 5.283 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.181 0.819 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.133 0.867 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.130 0.870 42 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges -15.316 -6.319 4.225 17.099 hybrid contribution 2.156 0.733 -1.230 2.588 sum -13.160 -5.586 2.995 14.607 Atomic orbital electron populations 1.20754 0.87302 1.04171 1.03737 1.20881 0.97221 0.86530 0.89332 1.21257 0.89620 1.00768 1.13278 1.19579 0.92671 0.78974 0.88452 1.69068 1.10740 1.20876 1.36158 1.21668 0.84830 0.77894 0.88446 1.90846 1.68715 1.37610 1.37520 1.21873 0.99165 1.01640 0.93663 1.17915 0.86565 1.00288 0.89772 0.90986 1.20749 1.16853 1.04888 1.10325 0.93015 1.24800 0.96632 0.94483 0.96569 1.69896 1.25861 1.16242 1.40061 0.86649 0.78793 0.80889 0.82337 1.19791 1.21137 1.21187 1.20770 0.94863 0.92795 0.94107 1.20987 1.00150 0.96128 0.95747 1.21004 0.99368 0.98528 0.96008 1.20810 1.02373 0.93893 1.00186 1.20976 1.00536 0.95560 0.97567 1.21084 0.99017 0.99699 0.94418 1.44803 1.13846 1.06252 1.62386 0.72986 1.20169 0.85271 0.80033 0.86472 1.84149 1.77012 1.29260 1.37122 1.67931 1.03304 1.30016 1.27023 0.89584 0.89967 0.89723 0.81929 0.89875 0.92008 0.93281 0.86699 0.87526 0.87705 0.87591 0.86961 0.70619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.63 10.18 36.00 0.37 -0.26 16 2 C 0.18 1.84 6.77 -82.66 -0.56 1.28 16 3 C -0.22 -2.61 9.67 -39.38 -0.38 -2.99 16 4 C 0.46 7.04 7.39 -154.99 -1.15 5.89 16 5 N -0.62 -11.80 10.42 -11.73 -0.12 -11.92 16 6 C 0.48 10.60 6.01 -11.98 -0.07 10.53 16 7 O -0.48 -12.01 14.70 5.22 0.08 -11.93 16 8 C -0.12 -2.63 5.04 -27.88 -0.14 -2.77 16 9 C 0.07 1.81 1.77 -92.92 -0.16 1.64 16 10 H 0.07 1.97 6.80 -51.93 -0.35 1.62 16 11 C -0.49 -13.54 6.29 -34.44 -0.22 -13.76 16 12 H 0.05 1.45 7.82 -52.48 -0.41 1.04 16 13 C 0.08 2.23 5.45 -17.82 -0.10 2.13 16 14 N -0.88 -25.93 12.77 55.43 0.71 -25.22 16 15 Si 0.89 22.53 29.54 -169.99 -5.02 17.50 16 16 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 18 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 19 C -0.02 -0.56 4.77 -104.62 -0.50 -1.06 16 20 C -0.11 -2.35 8.88 -39.59 -0.35 -2.70 16 21 C -0.13 -2.41 10.05 -39.58 -0.40 -2.81 16 22 C -0.15 -2.73 10.05 -39.58 -0.40 -3.13 16 23 C -0.13 -2.39 10.05 -39.59 -0.40 -2.78 16 24 C -0.12 -2.64 9.67 -39.58 -0.38 -3.02 16 25 N -0.63 -8.78 5.21 -13.43 -0.07 -8.85 16 26 H 0.43 6.56 6.88 -40.82 -0.28 6.28 16 27 C 0.58 6.63 8.89 -88.80 -0.79 5.84 16 28 O -0.47 -4.07 13.49 -16.29 -0.22 -4.29 16 29 N -0.55 -6.11 10.33 -10.77 -0.11 -6.23 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.38 8.08 -51.93 -0.42 -0.04 16 33 H 0.16 1.61 8.06 -52.49 -0.42 1.18 16 34 H 0.08 1.75 7.90 -51.93 -0.41 1.34 16 35 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.11 2.37 7.82 -52.48 -0.41 1.96 16 38 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 40 H 0.11 1.68 8.06 -52.48 -0.42 1.25 16 41 H 0.11 2.37 7.95 -52.49 -0.42 1.95 16 42 H 0.43 1.41 9.15 45.56 0.42 1.83 16 LS Contribution 366.07 15.07 5.52 5.52 Total: -1.00 -35.76 366.07 -9.25 -45.01 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -4.38 Total: 8.40 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -5.63 Total: -7.99 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: 0.40 Total: -52.22 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.14 Total: -16.22 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.76 -9.25 -45.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361840572.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.165 kcal (2) G-P(sol) polarization free energy of solvation -35.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds