Wall clock time and date at job start Tue Mar 31 2020 14:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.36731 * 119.84757 * 2 1 4 4 C 1.40232 * 118.83842 * 180.27322 * 3 2 1 5 5 N 1.34014 * 120.74920 * 179.72892 * 4 3 2 6 6 C 1.32527 * 119.99917 * 175.07842 * 5 4 3 7 7 O 1.21667 * 120.00295 * 64.77581 * 6 5 4 8 8 C 1.50700 * 119.99506 * 244.76835 * 6 5 4 9 9 C 1.53004 * 109.46910 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.47171 * 305.00014 * 9 8 6 11 11 C 1.50692 * 109.47194 * 65.00334 * 9 8 6 12 12 H 1.08007 * 119.99961 * 34.97906 * 11 9 8 13 13 C 1.37880 * 120.00101 * 214.97614 * 11 9 8 14 14 N 1.31510 * 120.00072 * 5.00465 * 13 11 9 15 15 Si 1.86805 * 119.99988 * 185.00546 * 13 11 9 16 16 H 1.48500 * 109.47156 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47014 * 119.99868 * 15 13 11 18 18 H 1.48498 * 109.46856 * 240.00181 * 15 13 11 19 19 C 1.50706 * 109.46992 * 185.00405 * 9 8 6 20 20 C 1.38229 * 119.99999 * 294.75362 * 19 9 8 21 21 C 1.38232 * 120.00162 * 179.78887 * 20 19 9 22 22 C 1.38242 * 119.99875 * 0.44207 * 21 20 19 23 23 C 1.38233 * 119.99437 * 359.81268 * 22 21 20 24 24 C 1.38231 * 120.00676 * 359.97438 * 23 22 21 25 25 N 1.37139 * 118.49910 * 359.50269 * 4 3 2 26 26 H 0.97003 * 120.22160 * 180.22178 * 25 4 3 27 27 C 1.35723 * 119.54971 * 0.49830 * 25 4 3 28 28 O 1.34854 * 119.40986 * 179.76103 * 27 25 4 29 29 N 1.31629 * 121.17865 * 359.74656 * 27 25 4 30 30 H 1.09000 * 109.47064 * 90.00087 * 1 2 3 31 31 H 1.09002 * 109.47569 * 209.99916 * 1 2 3 32 32 H 1.08997 * 109.47317 * 329.99721 * 1 2 3 33 33 H 1.07998 * 120.57878 * 359.97438 * 3 2 1 34 34 H 1.08996 * 109.47711 * 300.00437 * 8 6 5 35 35 H 1.09008 * 109.46945 * 60.00333 * 8 6 5 36 36 H 0.97002 * 120.00090 * 179.97438 * 14 13 11 37 37 H 1.08007 * 119.99815 * 0.02562 * 20 19 9 38 38 H 1.07996 * 120.00381 * 180.27128 * 21 20 19 39 39 H 1.07995 * 120.00013 * 179.83286 * 22 21 20 40 40 H 1.08005 * 119.99488 * 180.02562 * 23 22 21 41 41 H 1.07994 * 120.00237 * 179.97438 * 24 23 22 42 42 H 0.96694 * 117.00207 * 269.98222 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1874 1.1859 0.0000 4 6 3.5895 1.1613 -0.0059 5 7 4.2948 2.3007 -0.0115 6 6 5.6163 2.2625 0.0815 7 8 6.2741 1.7514 -0.8053 8 6 6.3042 2.8524 1.2856 9 6 7.8177 2.6786 1.1443 10 1 8.0492 1.6256 0.9839 11 6 8.3085 3.4853 -0.0301 12 1 7.8470 4.4331 -0.2649 13 6 9.3468 3.0134 -0.8050 14 7 9.8435 1.8165 -0.5807 15 14 10.0480 4.0742 -2.1734 16 1 9.3203 5.3679 -2.2192 17 1 11.4886 4.3261 -1.9156 18 1 9.8930 3.3722 -3.4727 19 6 8.4978 3.1566 2.4014 20 6 8.4392 4.4919 2.7540 21 6 9.0592 4.9295 3.9093 22 6 9.7457 4.0334 4.7073 23 6 9.8087 2.6991 4.3519 24 6 9.1849 2.2606 3.1989 25 7 4.2226 -0.0553 -0.0009 26 1 5.1915 -0.1015 -0.0015 27 6 3.4842 -1.1941 -0.0008 28 8 4.1096 -2.3888 -0.0008 29 7 2.1685 -1.1532 -0.0004 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 1.6544 2.1252 -0.0004 34 1 6.0658 3.9136 1.3568 35 1 5.9619 2.3419 2.1859 36 1 10.5737 1.4844 -1.1260 37 1 7.9056 5.1925 2.1287 38 1 9.0097 5.9720 4.1871 39 1 10.2324 4.3758 5.6085 40 1 10.3447 1.9989 4.9756 41 1 9.2346 1.2182 2.9211 42 1 4.3129 -2.7779 -0.8624 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361840572.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:26 Heat of formation + Delta-G solvation = -7.320585 kcal Electronic energy + Delta-G solvation = -27046.780327 eV Core-core repulsion = 23185.088157 eV Total energy + Delta-G solvation = -3861.692170 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.75745 -40.65534 -39.77976 -38.80938 -36.79667 -35.80153 -34.55695 -33.46361 -32.12107 -31.56427 -30.51211 -29.60015 -27.54667 -25.24131 -24.93315 -23.79449 -23.16789 -21.69907 -20.95238 -20.39888 -19.55472 -18.80998 -18.48486 -17.62198 -17.47256 -16.94169 -16.66558 -16.16182 -15.85344 -15.62885 -15.40776 -15.25946 -15.11440 -14.39703 -14.16248 -14.07694 -13.97884 -13.73843 -13.55786 -13.31437 -13.29233 -12.95861 -12.91139 -12.66229 -12.50469 -12.30974 -11.91385 -11.86216 -11.77694 -11.42247 -11.28913 -11.16384 -11.01460 -10.60799 -10.29835 -9.60601 -9.27474 -8.92799 -8.09595 -6.11657 -0.64872 0.15508 0.71559 0.77543 0.92269 1.30936 1.32584 1.42403 1.51880 2.20483 2.41121 2.44417 3.04138 3.12474 3.29793 3.37071 3.68472 4.13375 4.20599 4.30307 4.31822 4.35551 4.44585 4.53326 4.55452 4.61525 4.71615 4.87579 4.87856 4.92531 4.99955 5.12870 5.20760 5.31418 5.36407 5.45468 5.57967 5.61319 5.72705 5.77753 5.90297 6.10747 6.26805 6.36206 6.41749 6.57477 6.60515 6.94100 7.26128 7.50152 9.00198 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011726 B = 0.003672 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.207049 B = 7623.981727 C = 8636.656399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.206 3.794 3 C -0.241 4.241 4 C 0.463 3.537 5 N -0.666 5.666 6 C 0.493 3.507 7 O -0.530 6.530 8 C -0.118 4.118 9 C 0.081 3.919 10 H 0.033 0.967 11 C -0.489 4.489 12 H 0.038 0.962 13 C 0.027 3.973 14 N -0.913 5.913 15 Si 0.934 3.066 16 H -0.270 1.270 17 H -0.277 1.277 18 H -0.288 1.288 19 C -0.052 4.052 20 C -0.129 4.129 21 C -0.126 4.126 22 C -0.145 4.145 23 C -0.126 4.126 24 C -0.146 4.146 25 N -0.638 5.638 26 H 0.420 0.580 27 C 0.587 3.413 28 O -0.468 6.468 29 N -0.546 5.546 30 H 0.106 0.894 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.182 0.818 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.255 0.745 37 H 0.108 0.892 38 H 0.141 0.859 39 H 0.147 0.853 40 H 0.137 0.863 41 H 0.098 0.902 42 H 0.453 0.547 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.970 -6.022 5.955 18.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.082 3.918 3 C -0.267 4.267 4 C 0.211 3.789 5 N -0.416 5.416 6 C 0.282 3.718 7 O -0.405 6.405 8 C -0.158 4.158 9 C 0.062 3.938 10 H 0.052 0.948 11 C -0.527 4.527 12 H 0.056 0.944 13 C -0.171 4.171 14 N -0.553 5.553 15 Si 0.761 3.239 16 H -0.194 1.194 17 H -0.203 1.203 18 H -0.215 1.215 19 C -0.052 4.052 20 C -0.147 4.147 21 C -0.144 4.144 22 C -0.163 4.163 23 C -0.144 4.144 24 C -0.164 4.164 25 N -0.273 5.273 26 H 0.260 0.740 27 C 0.285 3.715 28 O -0.277 6.277 29 N -0.280 5.280 30 H 0.124 0.876 31 H 0.109 0.891 32 H 0.125 0.875 33 H 0.199 0.801 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.064 0.936 37 H 0.126 0.874 38 H 0.159 0.841 39 H 0.165 0.835 40 H 0.155 0.845 41 H 0.117 0.883 42 H 0.322 0.678 Dipole moment (debyes) X Y Z Total from point charges -17.037 -6.215 5.905 19.073 hybrid contribution 2.441 0.478 -1.660 2.990 sum -14.596 -5.737 4.245 16.247 Atomic orbital electron populations 1.20964 0.83774 1.05737 1.05345 1.21611 0.99211 0.85405 0.85565 1.21486 0.87774 1.02463 1.14927 1.20066 0.93782 0.78521 0.86516 1.68846 1.08707 1.22193 1.41896 1.21713 0.86011 0.76644 0.87412 1.90800 1.69942 1.40665 1.39142 1.21762 0.97387 1.01858 0.94803 1.17675 0.88623 0.97407 0.90141 0.94830 1.20938 1.16171 1.04233 1.11328 0.94382 1.25437 0.97448 0.95549 0.98713 1.70020 1.26577 1.17486 1.41196 0.85876 0.78497 0.79595 0.79942 1.19395 1.20268 1.21495 1.20607 0.96259 0.94112 0.94270 1.21039 1.01316 0.95176 0.97212 1.21384 0.97900 1.00500 0.94583 1.21298 1.00949 0.93037 1.00988 1.21318 0.99568 0.96987 0.96496 1.21128 1.00211 0.99085 0.96005 1.44989 1.13638 1.06968 1.61714 0.74033 1.20411 0.85357 0.80173 0.85529 1.84123 1.76708 1.27786 1.39111 1.68163 1.02758 1.30480 1.26639 0.87619 0.89104 0.87472 0.80082 0.89864 0.90376 0.93609 0.87355 0.84121 0.83507 0.84547 0.88343 0.67845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.85 10.18 71.23 0.73 -0.12 16 2 C 0.21 3.62 6.77 42.03 0.28 3.91 16 3 C -0.24 -5.32 9.67 22.40 0.22 -5.10 16 4 C 0.46 14.44 7.39 133.47 0.99 15.42 16 5 N -0.67 -26.45 10.42 -310.50 -3.24 -29.68 16 6 C 0.49 23.02 6.01 88.00 0.53 23.55 16 7 O -0.53 -28.79 14.70 -4.24 -0.06 -28.85 16 8 C -0.12 -5.36 5.04 29.85 0.15 -5.21 16 9 C 0.08 4.21 1.77 -12.29 -0.02 4.19 16 10 H 0.03 1.98 6.80 -2.39 -0.02 1.97 16 11 C -0.49 -28.42 6.29 25.60 0.16 -28.26 16 12 H 0.04 2.25 7.82 -2.91 -0.02 2.23 16 13 C 0.03 1.64 5.45 84.66 0.46 2.10 16 14 N -0.91 -56.41 12.77 21.45 0.27 -56.14 16 15 Si 0.93 47.79 29.54 68.60 2.03 49.81 16 16 H -0.27 -13.45 7.11 99.48 0.71 -12.74 16 17 H -0.28 -13.66 7.11 99.48 0.71 -12.96 16 18 H -0.29 -14.76 7.11 99.48 0.71 -14.05 16 19 C -0.05 -2.44 4.77 -19.86 -0.09 -2.53 16 20 C -0.13 -5.44 8.88 22.27 0.20 -5.24 16 21 C -0.13 -4.32 10.05 22.27 0.22 -4.10 16 22 C -0.14 -4.61 10.05 22.27 0.22 -4.39 16 23 C -0.13 -4.44 10.05 22.27 0.22 -4.22 16 24 C -0.15 -6.36 9.67 22.27 0.22 -6.14 16 25 N -0.64 -18.14 5.21 -307.88 -1.60 -19.74 16 26 H 0.42 13.79 6.88 -92.71 -0.64 13.15 16 27 C 0.59 12.83 8.89 179.71 1.60 14.43 16 28 O -0.47 -7.61 13.49 -81.22 -1.10 -8.71 16 29 N -0.55 -11.01 10.33 -301.60 -3.12 -14.12 16 30 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.11 0.51 8.08 -2.39 -0.02 0.49 16 33 H 0.18 3.26 8.06 -2.91 -0.02 3.24 16 34 H 0.08 3.71 7.90 -2.39 -0.02 3.69 16 35 H 0.08 3.19 8.14 -2.38 -0.02 3.17 16 36 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 37 H 0.11 4.58 7.82 -2.91 -0.02 4.56 16 38 H 0.14 3.84 8.06 -2.91 -0.02 3.81 16 39 H 0.15 3.49 8.06 -2.91 -0.02 3.46 16 40 H 0.14 3.92 8.06 -2.91 -0.02 3.89 16 41 H 0.10 4.42 7.95 -2.91 -0.02 4.40 16 42 H 0.45 2.40 9.15 -74.06 -0.68 1.72 16 Total: -1.00 -82.56 366.07 -0.97 -83.53 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: -0.24 Total: 25.61 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: 6.08 Total: -1.71 kcal Atomic # 7 Polarization: -112.01 SS G_CDS: -7.68 Total: -119.69 kcal Atomic # 8 Polarization: -36.40 SS G_CDS: -1.16 Total: -37.56 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 2.03 Total: 49.81 kcal Total: -82.56 -0.97 -83.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361840572.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.211 kcal (2) G-P(sol) polarization free energy of solvation -82.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds