Wall clock time and date at job start Tue Mar 31 2020 14:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34411 * 118.74045 * 2 1 4 4 C 1.46896 * 119.35463 * 180.02562 * 3 2 1 5 5 N 1.31488 * 121.33687 * 179.97438 * 4 3 2 6 6 C 1.46492 * 120.00211 * 353.29714 * 5 4 3 7 7 C 1.53010 * 109.46940 * 240.42455 * 6 5 4 8 8 C 1.50695 * 115.54832 * 277.60597 * 7 6 5 9 9 H 1.08006 * 120.00078 * 143.57806 * 8 7 6 10 10 C 1.37875 * 120.00323 * 323.58380 * 8 7 6 11 11 N 1.31513 * 119.99651 * 335.63711 * 10 8 7 12 12 Si 1.86806 * 120.00174 * 155.64394 * 10 8 7 13 13 H 1.48497 * 109.46831 * 359.97438 * 12 10 8 14 14 H 1.48493 * 109.47075 * 119.99705 * 12 10 8 15 15 H 1.48502 * 109.46583 * 239.99797 * 12 10 8 16 16 C 1.52995 * 117.49836 * 131.89994 * 7 6 5 17 17 C 1.53003 * 60.00245 * 252.51233 * 16 7 6 18 18 C 1.47941 * 117.32296 * 0.02562 * 4 3 2 19 19 C 1.39212 * 121.30706 * 179.97438 * 18 4 3 20 20 C 1.37851 * 119.59142 * 180.02562 * 19 18 4 21 21 N 1.48019 * 119.85743 * 179.97438 * 20 19 18 22 22 O 1.21797 * 120.00261 * 180.02562 * 21 20 19 23 23 O 1.21805 * 120.00067 * 0.02562 * 21 20 19 24 24 C 1.38701 * 120.28845 * 0.02562 * 20 19 18 25 25 C 1.37811 * 120.67606 * 0.25256 * 24 20 19 26 26 C 1.39164 * 119.90962 * 359.45307 * 25 24 20 27 27 N 1.36040 * 118.73692 * 180.02562 * 2 1 3 28 28 H 0.97003 * 118.78900 * 0.02562 * 27 2 1 29 29 H 1.09004 * 109.46491 * 89.99894 * 1 2 3 30 30 H 1.08999 * 109.47320 * 210.00160 * 1 2 3 31 31 H 1.08997 * 109.47162 * 330.00393 * 1 2 3 32 32 H 1.07999 * 120.32660 * 0.04757 * 3 2 1 33 33 H 1.09002 * 109.47626 * 0.41989 * 6 5 4 34 34 H 1.09002 * 109.47407 * 120.42591 * 6 5 4 35 35 H 0.97005 * 119.99643 * 185.02355 * 11 10 8 36 36 H 1.09007 * 117.50040 * 359.97438 * 16 7 6 37 37 H 1.09001 * 117.50127 * 145.02216 * 16 7 6 38 38 H 1.08994 * 117.49992 * 252.51659 * 17 16 7 39 39 H 1.08994 * 117.52172 * 107.47704 * 17 16 7 40 40 H 1.07997 * 120.20733 * 0.04090 * 19 18 4 41 41 H 1.08000 * 119.65900 * 179.97438 * 24 20 19 42 42 H 1.07996 * 120.04339 * 179.72491 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1533 1.1785 0.0000 4 6 3.6222 1.1943 -0.0006 5 7 4.2940 2.3246 -0.0011 6 6 3.5850 3.5980 -0.1492 7 6 4.0826 4.3156 -1.4056 8 6 5.3595 5.0993 -1.2437 9 1 6.0774 5.1346 -2.0499 10 6 5.6114 5.7714 -0.0665 11 7 4.6133 6.1426 0.7052 12 14 7.3704 6.1547 0.4323 13 1 8.3022 5.6336 -0.5999 14 1 7.5404 7.6247 0.5565 15 1 7.6665 5.5100 1.7368 16 6 3.0290 4.8712 -2.3658 17 6 3.8390 3.6322 -2.7527 18 6 4.3153 -0.1127 -0.0017 19 6 5.7050 -0.1946 -0.0029 20 6 6.3141 -1.4312 -0.0044 21 7 7.7913 -1.5251 -0.0062 22 8 8.3322 -2.6164 -0.0081 23 8 8.4660 -0.5110 -0.0058 24 6 5.5488 -2.5880 -0.0054 25 6 4.1723 -2.5203 -0.0101 26 6 3.5384 -1.2814 -0.0023 27 7 2.1611 -1.1928 -0.0005 28 1 1.6403 -2.0112 -0.0013 29 1 -0.3632 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.5982 2.1049 0.0008 33 1 2.5150 3.4100 -0.2380 34 1 3.7730 4.2223 0.7243 35 1 4.7846 6.6783 1.4956 36 1 1.9813 4.7252 -2.1027 37 1 3.2592 5.8040 -2.8806 38 1 4.6022 3.7498 -3.5219 39 1 3.3247 2.6713 -2.7438 40 1 6.3023 0.7052 -0.0023 41 1 6.0366 -3.5515 -0.0071 42 1 3.5864 -3.4275 -0.0153 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362360204.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:26 Heat of formation + Delta-G solvation = 90.443210 kcal Electronic energy + Delta-G solvation = -27347.430901 eV Core-core repulsion = 23489.978087 eV Total energy + Delta-G solvation = -3857.452814 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.96731 -40.82746 -37.74367 -37.15379 -36.32048 -35.04235 -32.84010 -32.18098 -31.39360 -30.11842 -28.23800 -26.23333 -25.89807 -25.27359 -23.42639 -22.47510 -21.27887 -20.82990 -19.72757 -18.91024 -18.57278 -18.25592 -17.60377 -17.28888 -16.50730 -15.74583 -15.15524 -15.07703 -14.61593 -14.47713 -14.35816 -14.12429 -13.86776 -13.51237 -13.00412 -12.90032 -12.71954 -12.56831 -12.14525 -12.03885 -11.68419 -11.48397 -11.31324 -11.04312 -10.98585 -10.91622 -10.86571 -10.52472 -10.43999 -10.18935 -9.57177 -9.45286 -9.37752 -9.04303 -8.71318 -8.46035 -7.99576 -7.20781 -6.12266 -4.00473 -0.03952 0.66752 1.32826 1.62341 1.74327 2.66922 2.85635 3.33042 3.44055 3.51477 3.78846 4.12752 4.17707 4.43143 4.44753 4.55240 4.64182 4.81557 4.89601 4.97302 5.17399 5.23173 5.28872 5.46017 5.53033 5.53872 5.59500 5.77322 5.89421 5.94675 6.03128 6.18412 6.22140 6.41279 6.59090 6.59795 6.66966 6.78330 6.88776 6.91404 7.05718 7.13568 7.32920 7.53531 7.87251 7.93423 8.40338 8.55348 8.89708 9.53374 10.93220 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.009028 B = 0.005013 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3100.809587 B = 5584.302159 C = 7979.574938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.125 3.875 3 C -0.220 4.220 4 C 0.173 3.827 5 N -0.457 5.457 6 C 0.067 3.933 7 C 0.071 3.929 8 C -0.483 4.483 9 H 0.062 0.938 10 C 0.078 3.922 11 N -0.874 5.874 12 Si 0.885 3.115 13 H -0.269 1.269 14 H -0.287 1.287 15 H -0.280 1.280 16 C -0.198 4.198 17 C -0.207 4.207 18 C -0.081 4.081 19 C 0.026 3.974 20 C -0.095 4.095 21 N 0.039 4.961 22 O -0.181 6.181 23 O -0.160 6.160 24 C -0.013 4.013 25 C -0.184 4.184 26 C 0.243 3.757 27 N -0.624 5.624 28 H 0.412 0.588 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.148 0.852 33 H 0.021 0.979 34 H 0.130 0.870 35 H 0.262 0.738 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.171 0.829 41 H 0.153 0.847 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.306 -18.625 0.538 21.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.021 3.979 3 C -0.246 4.246 4 C -0.012 4.012 5 N -0.166 5.166 6 C -0.061 4.061 7 C 0.070 3.930 8 C -0.520 4.520 9 H 0.080 0.920 10 C -0.125 4.125 11 N -0.510 5.510 12 Si 0.712 3.288 13 H -0.193 1.193 14 H -0.214 1.214 15 H -0.205 1.205 16 C -0.237 4.237 17 C -0.244 4.244 18 C -0.087 4.087 19 C 0.004 3.996 20 C -0.180 4.180 21 N 0.555 4.445 22 O -0.393 6.393 23 O -0.376 6.376 24 C -0.033 4.033 25 C -0.207 4.207 26 C 0.136 3.864 27 N -0.237 5.237 28 H 0.248 0.752 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.165 0.835 33 H 0.039 0.961 34 H 0.147 0.853 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.189 0.811 41 H 0.171 0.829 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.171 -17.881 0.819 20.587 hybrid contribution 0.081 -0.083 0.171 0.207 sum -10.090 -17.963 0.990 20.627 Atomic orbital electron populations 1.20961 0.88746 1.04096 1.03640 1.19686 0.93885 0.85125 0.99220 1.22332 0.94906 0.96778 1.10602 1.20867 0.88673 0.91360 1.00334 1.72621 1.38140 0.98912 1.06887 1.22240 0.92558 0.88198 1.03128 1.18740 0.94703 0.95025 0.84577 1.20430 1.01624 1.30015 0.99911 0.91957 1.24887 0.96988 0.94576 0.96075 1.69937 1.30671 1.34095 1.16319 0.86652 0.85602 0.77331 0.79182 1.19294 1.21356 1.20531 1.23025 0.95549 0.96361 1.08747 1.22789 1.03807 0.94729 1.03098 1.18137 0.91404 0.91265 1.07855 1.21001 0.93928 0.97103 0.87574 1.20837 0.79428 0.96528 1.21231 1.43502 1.03554 1.00316 0.97151 1.94472 1.74482 1.15698 1.54602 1.94604 1.63374 1.26153 1.53501 1.20671 0.92874 0.97720 0.92048 1.20410 0.93532 0.95735 1.10990 1.18034 0.83356 0.93840 0.91183 1.41055 1.03462 1.08282 1.70855 0.75187 0.90019 0.91168 0.89342 0.83461 0.96131 0.85296 0.92772 0.92040 0.90151 0.90682 0.92026 0.81145 0.82917 0.83441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 10.00 36.01 0.36 -0.37 16 2 C 0.13 1.27 6.79 -82.08 -0.56 0.71 16 3 C -0.22 -3.17 8.93 -37.43 -0.33 -3.50 16 4 C 0.17 3.06 6.97 -80.54 -0.56 2.50 16 5 N -0.46 -9.97 9.91 -55.59 -0.55 -10.52 16 6 C 0.07 1.57 5.96 -4.04 -0.02 1.55 16 7 C 0.07 1.77 1.93 -155.66 -0.30 1.46 16 8 C -0.48 -13.44 8.95 -34.44 -0.31 -13.75 16 9 H 0.06 1.76 7.93 -52.48 -0.42 1.35 16 10 C 0.08 2.15 4.95 -17.82 -0.09 2.06 16 11 N -0.87 -24.27 11.36 55.43 0.63 -23.64 16 12 Si 0.89 21.69 29.61 -169.99 -5.03 16.66 16 13 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 14 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 15 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 16 C -0.20 -4.52 9.88 -26.73 -0.26 -4.79 16 17 C -0.21 -4.65 9.88 -26.73 -0.26 -4.91 16 18 C -0.08 -1.24 5.89 -104.77 -0.62 -1.85 16 19 C 0.03 0.42 9.14 -39.36 -0.36 0.06 16 20 C -0.09 -1.37 6.85 -79.92 -0.55 -1.91 16 21 N 0.04 0.64 4.45 33.98 0.15 0.79 16 22 O -0.18 -2.91 18.43 -29.46 -0.54 -3.45 16 23 O -0.16 -3.00 18.44 -29.46 -0.54 -3.54 16 24 C -0.01 -0.13 9.52 -39.57 -0.38 -0.51 16 25 C -0.18 -1.56 9.89 -39.39 -0.39 -1.95 16 26 C 0.24 2.67 6.66 -83.95 -0.56 2.11 16 27 N -0.62 -5.29 5.30 -7.08 -0.04 -5.32 16 28 H 0.41 1.84 8.56 -40.82 -0.35 1.49 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.28 8.11 -51.93 -0.42 -0.14 16 31 H 0.09 0.56 8.04 -51.93 -0.42 0.14 16 32 H 0.15 2.17 5.94 -52.49 -0.31 1.85 16 33 H 0.02 0.44 5.05 -51.93 -0.26 0.17 16 34 H 0.13 3.41 5.55 -51.93 -0.29 3.12 16 35 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 36 H 0.06 1.28 8.07 -51.93 -0.42 0.87 16 37 H 0.08 1.86 8.14 -51.93 -0.42 1.44 16 38 H 0.07 1.69 8.14 -51.93 -0.42 1.27 16 39 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.17 3.16 7.26 -52.49 -0.38 2.78 16 41 H 0.15 1.27 7.59 -52.49 -0.40 0.87 16 42 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 LS Contribution 362.07 15.07 5.46 5.46 Total: -1.00 -32.35 362.07 -10.58 -42.93 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -4.91 Total: 3.73 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: -5.19 Total: -23.09 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.19 Total: -38.69 kcal Atomic # 8 Polarization: -5.91 SS G_CDS: -1.09 Total: -6.99 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.35 -10.58 -42.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362360204.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.370 kcal (2) G-P(sol) polarization free energy of solvation -32.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds