Wall clock time and date at job start Tue Mar 31 2020 14:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34411 * 118.74045 * 2 1 4 4 C 1.46896 * 119.35463 * 180.02562 * 3 2 1 5 5 N 1.31488 * 121.33687 * 179.97438 * 4 3 2 6 6 C 1.46492 * 120.00211 * 353.29714 * 5 4 3 7 7 C 1.53010 * 109.46940 * 240.42455 * 6 5 4 8 8 C 1.50695 * 115.54832 * 277.60597 * 7 6 5 9 9 H 1.08006 * 120.00078 * 143.57806 * 8 7 6 10 10 C 1.37875 * 120.00323 * 323.58380 * 8 7 6 11 11 N 1.31513 * 119.99651 * 335.63711 * 10 8 7 12 12 Si 1.86806 * 120.00174 * 155.64394 * 10 8 7 13 13 H 1.48497 * 109.46831 * 359.97438 * 12 10 8 14 14 H 1.48493 * 109.47075 * 119.99705 * 12 10 8 15 15 H 1.48502 * 109.46583 * 239.99797 * 12 10 8 16 16 C 1.52995 * 117.49836 * 131.89994 * 7 6 5 17 17 C 1.53003 * 60.00245 * 252.51233 * 16 7 6 18 18 C 1.47941 * 117.32296 * 0.02562 * 4 3 2 19 19 C 1.39212 * 121.30706 * 179.97438 * 18 4 3 20 20 C 1.37851 * 119.59142 * 180.02562 * 19 18 4 21 21 N 1.48019 * 119.85743 * 179.97438 * 20 19 18 22 22 O 1.21797 * 120.00261 * 180.02562 * 21 20 19 23 23 O 1.21805 * 120.00067 * 0.02562 * 21 20 19 24 24 C 1.38701 * 120.28845 * 0.02562 * 20 19 18 25 25 C 1.37811 * 120.67606 * 0.25256 * 24 20 19 26 26 C 1.39164 * 119.90962 * 359.45307 * 25 24 20 27 27 N 1.36040 * 118.73692 * 180.02562 * 2 1 3 28 28 H 0.97003 * 118.78900 * 0.02562 * 27 2 1 29 29 H 1.09004 * 109.46491 * 89.99894 * 1 2 3 30 30 H 1.08999 * 109.47320 * 210.00160 * 1 2 3 31 31 H 1.08997 * 109.47162 * 330.00393 * 1 2 3 32 32 H 1.07999 * 120.32660 * 0.04757 * 3 2 1 33 33 H 1.09002 * 109.47626 * 0.41989 * 6 5 4 34 34 H 1.09002 * 109.47407 * 120.42591 * 6 5 4 35 35 H 0.97005 * 119.99643 * 185.02355 * 11 10 8 36 36 H 1.09007 * 117.50040 * 359.97438 * 16 7 6 37 37 H 1.09001 * 117.50127 * 145.02216 * 16 7 6 38 38 H 1.08994 * 117.49992 * 252.51659 * 17 16 7 39 39 H 1.08994 * 117.52172 * 107.47704 * 17 16 7 40 40 H 1.07997 * 120.20733 * 0.04090 * 19 18 4 41 41 H 1.08000 * 119.65900 * 179.97438 * 24 20 19 42 42 H 1.07996 * 120.04339 * 179.72491 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1533 1.1785 0.0000 4 6 3.6222 1.1943 -0.0006 5 7 4.2940 2.3246 -0.0011 6 6 3.5850 3.5980 -0.1492 7 6 4.0826 4.3156 -1.4056 8 6 5.3595 5.0993 -1.2437 9 1 6.0774 5.1346 -2.0499 10 6 5.6114 5.7714 -0.0665 11 7 4.6133 6.1426 0.7052 12 14 7.3704 6.1547 0.4323 13 1 8.3022 5.6336 -0.5999 14 1 7.5404 7.6247 0.5565 15 1 7.6665 5.5100 1.7368 16 6 3.0290 4.8712 -2.3658 17 6 3.8390 3.6322 -2.7527 18 6 4.3153 -0.1127 -0.0017 19 6 5.7050 -0.1946 -0.0029 20 6 6.3141 -1.4312 -0.0044 21 7 7.7913 -1.5251 -0.0062 22 8 8.3322 -2.6164 -0.0081 23 8 8.4660 -0.5110 -0.0058 24 6 5.5488 -2.5880 -0.0054 25 6 4.1723 -2.5203 -0.0101 26 6 3.5384 -1.2814 -0.0023 27 7 2.1611 -1.1928 -0.0005 28 1 1.6403 -2.0112 -0.0013 29 1 -0.3632 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.5982 2.1049 0.0008 33 1 2.5150 3.4100 -0.2380 34 1 3.7730 4.2223 0.7243 35 1 4.7846 6.6783 1.4956 36 1 1.9813 4.7252 -2.1027 37 1 3.2592 5.8040 -2.8806 38 1 4.6022 3.7498 -3.5219 39 1 3.3247 2.6713 -2.7438 40 1 6.3023 0.7052 -0.0023 41 1 6.0366 -3.5515 -0.0071 42 1 3.5864 -3.4275 -0.0153 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362360204.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:25 Heat of formation + Delta-G solvation = 70.024011 kcal Electronic energy + Delta-G solvation = -27348.316344 eV Core-core repulsion = 23489.978087 eV Total energy + Delta-G solvation = -3858.338256 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.21208 -41.85679 -39.00668 -38.58319 -37.61982 -36.43706 -34.27696 -33.76087 -32.52841 -31.17259 -29.21547 -27.95029 -27.09594 -26.96002 -24.53739 -23.52903 -23.05036 -22.06290 -21.13662 -20.54858 -19.76091 -19.20526 -18.71182 -18.56524 -18.24806 -17.10668 -16.70450 -16.42776 -16.01655 -15.71188 -15.47859 -15.35297 -14.98219 -14.72670 -14.24354 -14.06658 -13.87193 -13.66731 -13.45822 -13.13027 -12.96218 -12.85014 -12.82204 -12.72503 -12.50761 -12.35814 -12.27561 -12.27138 -12.17561 -12.03672 -11.34299 -11.24342 -10.65103 -10.44179 -10.18462 -10.09655 -9.77198 -8.39586 -8.21769 -6.15354 -1.22019 -0.36255 0.16762 0.46380 0.72624 1.30042 1.37956 1.48227 1.77842 1.81547 2.35913 2.64954 2.88997 3.03874 3.25492 3.49349 3.60242 3.63863 3.70890 3.85453 4.18166 4.19960 4.28811 4.37478 4.44789 4.55344 4.62155 4.71150 4.73788 4.75618 4.81882 4.83641 4.87396 4.94909 5.06086 5.14936 5.19842 5.29880 5.40396 5.45297 5.48281 5.59601 5.88017 5.92631 6.35045 6.37562 6.54715 6.76418 7.19650 7.38994 8.82390 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.009028 B = 0.005013 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3100.809587 B = 5584.302159 C = 7979.574938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.183 3.817 3 C -0.286 4.286 4 C 0.193 3.807 5 N -0.541 5.541 6 C 0.088 3.912 7 C 0.037 3.963 8 C -0.508 4.508 9 H 0.041 0.959 10 C 0.043 3.957 11 N -0.890 5.890 12 Si 0.934 3.066 13 H -0.276 1.276 14 H -0.271 1.271 15 H -0.283 1.283 16 C -0.189 4.189 17 C -0.188 4.188 18 C -0.116 4.116 19 C 0.007 3.993 20 C -0.107 4.107 21 N 0.040 4.960 22 O -0.133 6.133 23 O -0.253 6.253 24 C 0.001 3.999 25 C -0.144 4.144 26 C 0.253 3.747 27 N -0.597 5.597 28 H 0.442 0.558 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.087 0.913 32 H 0.135 0.865 33 H 0.032 0.968 34 H 0.086 0.914 35 H 0.264 0.736 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.125 0.875 41 H 0.190 0.810 42 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.934 -24.490 0.537 28.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.075 3.925 3 C -0.312 4.312 4 C 0.010 3.990 5 N -0.252 5.252 6 C -0.041 4.041 7 C 0.037 3.963 8 C -0.545 4.545 9 H 0.060 0.940 10 C -0.158 4.158 11 N -0.528 5.528 12 Si 0.760 3.240 13 H -0.200 1.200 14 H -0.197 1.197 15 H -0.209 1.209 16 C -0.228 4.228 17 C -0.225 4.225 18 C -0.121 4.121 19 C -0.015 4.015 20 C -0.193 4.193 21 N 0.551 4.449 22 O -0.361 6.361 23 O -0.447 6.447 24 C -0.020 4.020 25 C -0.165 4.165 26 C 0.144 3.856 27 N -0.211 5.211 28 H 0.284 0.716 29 H 0.120 0.880 30 H 0.128 0.872 31 H 0.106 0.894 32 H 0.153 0.847 33 H 0.050 0.950 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.143 0.857 41 H 0.207 0.793 42 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -13.778 -23.588 0.812 27.329 hybrid contribution 0.996 1.191 0.169 1.562 sum -12.782 -22.397 0.980 25.806 Atomic orbital electron populations 1.21168 0.84839 1.06089 1.05424 1.20194 0.95942 0.84119 0.92249 1.22112 0.93041 0.98496 1.17592 1.21546 0.90816 0.91353 0.95286 1.72603 1.38750 0.99250 1.14570 1.21693 0.93136 0.89003 1.00229 1.18899 0.94532 0.96238 0.86674 1.20608 1.02939 1.31004 0.99934 0.94041 1.25397 0.99634 0.94749 0.96060 1.70014 1.31706 1.34555 1.16487 0.85900 0.82182 0.77761 0.78191 1.20040 1.19695 1.20941 1.22979 0.96252 0.96001 1.07534 1.22665 1.03295 0.95207 1.01382 1.18223 0.91285 0.92007 1.10593 1.20700 0.94592 0.96668 0.89528 1.21032 0.77874 0.97445 1.22958 1.43845 1.04662 0.99869 0.96535 1.94392 1.75218 1.15293 1.51180 1.94641 1.64534 1.26833 1.58666 1.21212 0.93588 0.97197 0.89973 1.21076 0.92724 0.96441 1.06259 1.18166 0.84212 0.93259 0.89946 1.41183 1.02737 1.09181 1.67973 0.71582 0.88036 0.87229 0.89397 0.84706 0.94998 0.89674 0.92644 0.89936 0.91114 0.91464 0.90596 0.85741 0.79318 0.76866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 10.00 71.24 0.71 -0.05 16 2 C 0.18 2.88 6.79 41.03 0.28 3.16 16 3 C -0.29 -8.03 8.93 23.66 0.21 -7.82 16 4 C 0.19 7.15 6.97 44.04 0.31 7.46 16 5 N -0.54 -25.88 9.91 -329.77 -3.27 -29.15 16 6 C 0.09 4.48 5.96 86.38 0.51 5.00 16 7 C 0.04 2.00 1.93 -52.93 -0.10 1.90 16 8 C -0.51 -30.53 8.95 25.60 0.23 -30.30 16 9 H 0.04 2.56 7.93 -2.91 -0.02 2.53 16 10 C 0.04 2.54 4.95 84.65 0.42 2.96 16 11 N -0.89 -52.68 11.36 21.45 0.24 -52.44 16 12 Si 0.93 47.60 29.61 68.60 2.03 49.63 16 13 H -0.28 -14.20 7.11 99.48 0.71 -13.49 16 14 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 15 H -0.28 -14.49 7.11 99.48 0.71 -13.79 16 16 C -0.19 -8.98 9.88 30.59 0.30 -8.68 16 17 C -0.19 -8.86 9.88 30.60 0.30 -8.56 16 18 C -0.12 -3.49 5.89 -19.96 -0.12 -3.61 16 19 C 0.01 0.26 9.14 22.41 0.20 0.46 16 20 C -0.11 -3.02 6.85 36.39 0.25 -2.77 16 21 N 0.04 1.36 4.45 -46.42 -0.21 1.15 16 22 O -0.13 -4.04 18.43 18.89 0.35 -3.69 16 23 O -0.25 -10.52 18.44 18.88 0.35 -10.17 16 24 C 0.00 0.01 9.52 22.28 0.21 0.22 16 25 C -0.14 -1.37 9.89 22.39 0.22 -1.15 16 26 C 0.25 4.32 6.66 38.90 0.26 4.58 16 27 N -0.60 -6.21 5.30 -176.32 -0.94 -7.15 16 28 H 0.44 -0.12 8.56 -92.71 -0.79 -0.91 16 29 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.11 -0.03 8.11 -2.39 -0.02 -0.05 16 31 H 0.09 0.73 8.04 -2.39 -0.02 0.71 16 32 H 0.14 4.08 5.94 -2.91 -0.02 4.06 16 33 H 0.03 1.46 5.05 -2.39 -0.01 1.45 16 34 H 0.09 4.95 5.55 -2.39 -0.01 4.94 16 35 H 0.26 14.77 8.32 -92.70 -0.77 14.00 16 36 H 0.08 3.50 8.07 -2.38 -0.02 3.48 16 37 H 0.07 3.43 8.14 -2.39 -0.02 3.41 16 38 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 39 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 40 H 0.12 5.41 7.26 -2.91 -0.02 5.39 16 41 H 0.19 1.76 7.59 -2.91 -0.02 1.73 16 42 H 0.21 -0.55 8.06 -2.91 -0.02 -0.57 16 Total: -1.00 -84.60 362.07 3.05 -81.55 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: 0.29 Total: 7.46 kcal Atomic # 6 Polarization: -41.40 SS G_CDS: 4.20 Total: -37.19 kcal Atomic # 7 Polarization: -83.42 SS G_CDS: -4.17 Total: -87.59 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: 0.70 Total: -13.86 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.63 kcal Total: -84.60 3.05 -81.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362360204.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.571 kcal (2) G-P(sol) polarization free energy of solvation -84.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds