Wall clock time and date at job start Tue Mar 31 2020 15:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30846 * 125.89980 * 2 1 4 4 N 1.40078 * 108.20334 * 180.14772 * 3 2 1 5 5 C 1.46505 * 126.03720 * 179.85449 * 4 3 2 6 6 C 1.34949 * 107.92924 * 359.59176 * 4 3 2 7 7 C 1.35315 * 107.74403 * 0.24281 * 6 4 3 8 8 C 1.50699 * 126.03901 * 179.97438 * 7 6 4 9 9 H 1.09003 * 109.87328 * 213.48123 * 8 7 6 10 10 C 1.54327 * 109.88149 * 92.47032 * 8 7 6 11 11 C 1.55162 * 102.93959 * 218.38874 * 10 8 7 12 12 C 1.54906 * 101.58058 * 35.50331 * 11 10 8 13 13 N 1.47016 * 109.88469 * 334.66012 * 8 7 6 14 14 S 1.65600 * 125.64815 * 298.31765 * 13 8 7 15 15 O 1.42100 * 104.28100 * 29.75190 * 14 13 8 16 16 O 1.42098 * 104.27976 * 157.61516 * 14 13 8 17 17 C 1.81405 * 104.44656 * 273.68375 * 14 13 8 18 18 C 1.53003 * 109.47112 * 184.93896 * 17 14 13 19 19 C 1.50707 * 109.46875 * 179.97438 * 18 17 14 20 20 H 1.07996 * 119.99695 * 0.02562 * 19 18 17 21 21 C 1.37876 * 119.99502 * 180.02562 * 19 18 17 22 22 N 1.31518 * 120.00424 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99544 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47483 * 59.99996 * 23 21 19 25 25 H 1.48506 * 109.47202 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47333 * 299.99666 * 23 21 19 27 27 H 1.08997 * 109.47064 * 270.30123 * 1 2 3 28 28 H 1.09002 * 109.47071 * 30.30419 * 1 2 3 29 29 H 1.09002 * 109.47382 * 150.29948 * 1 2 3 30 30 H 1.08999 * 109.47470 * 269.69183 * 5 4 3 31 31 H 1.09006 * 109.46530 * 29.69173 * 5 4 3 32 32 H 1.08997 * 109.47062 * 149.68619 * 5 4 3 33 33 H 1.08001 * 126.12548 * 180.26359 * 6 4 3 34 34 H 1.08997 * 110.72056 * 336.74857 * 10 8 7 35 35 H 1.09000 * 110.71837 * 100.02603 * 10 8 7 36 36 H 1.08999 * 111.00129 * 153.57735 * 11 10 8 37 37 H 1.08997 * 111.00145 * 277.38971 * 11 10 8 38 38 H 1.08991 * 110.37119 * 81.82820 * 12 11 10 39 39 H 1.09005 * 110.36261 * 204.04261 * 12 11 10 40 40 H 1.09003 * 109.46992 * 304.94028 * 17 14 13 41 41 H 1.08997 * 109.47150 * 64.93670 * 17 14 13 42 42 H 1.08994 * 109.46824 * 299.99693 * 18 17 14 43 43 H 1.09002 * 109.46694 * 60.00548 * 18 17 14 44 44 H 0.96993 * 119.99887 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6341 -0.0034 5 6 4.7899 1.5007 -0.0076 6 6 3.6142 -0.7154 0.0037 7 6 2.3271 -1.1330 0.0059 8 6 1.8599 -2.5657 0.0129 9 1 0.9320 -2.6557 -0.5521 10 6 1.6379 -3.0383 1.4652 11 6 2.1508 -4.5024 1.4363 12 6 3.3379 -4.3966 0.4467 13 7 2.8927 -3.4314 -0.5748 14 16 3.4612 -3.3382 -2.1274 15 8 3.3254 -1.9655 -2.4686 16 8 4.7395 -3.9560 -2.0702 17 6 2.3073 -4.3513 -3.0933 18 6 2.7989 -4.4458 -4.5392 19 6 1.8406 -5.2879 -5.3415 20 1 0.9681 -5.7128 -4.8676 21 6 2.0779 -5.5159 -6.6804 22 7 3.1407 -4.9988 -7.2573 23 14 0.8897 -6.5591 -7.6750 24 1 -0.4574 -5.9346 -7.6507 25 1 1.3668 -6.6510 -9.0784 26 1 0.8148 -7.9207 -7.0871 27 1 -0.3633 0.0054 1.0276 28 1 -0.3633 0.8873 -0.5186 29 1 -0.3634 -0.8927 -0.5092 30 1 5.0832 1.7103 -1.0362 31 1 4.5561 2.4359 0.5013 32 1 5.6091 1.0009 0.5092 33 1 4.4891 -1.3485 0.0073 34 1 2.2248 -2.4377 2.1601 35 1 0.5796 -3.0054 1.7239 36 1 2.4915 -4.8165 2.4230 37 1 1.3839 -5.1776 1.0568 38 1 4.2260 -4.0255 0.9579 39 1 3.5401 -5.3665 -0.0080 40 1 2.2527 -5.3509 -2.6621 41 1 1.3185 -3.8931 -3.0749 42 1 2.8534 -3.4462 -4.9704 43 1 3.7877 -4.9040 -4.5575 44 1 3.3077 -5.1595 -8.1991 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366066289.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:21 Heat of formation + Delta-G solvation = 3.745676 kcal Electronic energy + Delta-G solvation = -26938.514998 eV Core-core repulsion = 23212.746648 eV Total energy + Delta-G solvation = -3725.768349 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.21745 -38.36929 -36.53834 -35.36979 -33.93136 -33.87027 -31.19353 -31.10839 -30.72275 -29.65405 -27.80762 -25.58700 -25.12730 -22.70018 -21.64348 -21.30696 -20.47933 -19.58472 -18.31166 -17.50890 -16.84498 -16.46300 -15.88676 -15.44565 -15.23514 -15.03154 -14.55945 -14.21546 -13.87442 -13.73460 -13.53758 -13.36829 -13.24652 -13.07740 -12.72084 -12.49981 -12.24797 -12.15184 -12.00923 -11.73313 -11.59009 -11.51117 -11.44996 -11.29417 -11.20257 -11.05703 -10.94959 -10.80187 -10.44777 -10.41125 -10.35756 -9.74772 -9.33170 -9.04239 -8.78021 -8.49174 -8.10437 -6.11366 -4.17015 0.79058 2.04887 2.62067 2.83554 3.13828 3.27877 3.32526 3.34452 4.29528 4.35878 4.40632 4.52427 4.59576 4.85374 4.89215 4.94637 5.03113 5.12117 5.17083 5.23639 5.28874 5.35606 5.39298 5.46651 5.60688 5.63500 5.71080 5.73156 5.74432 5.80766 5.82309 5.91336 5.96637 6.09807 6.20467 6.39935 6.51703 6.59713 6.82288 7.13293 7.30715 7.37302 7.81427 7.86064 8.18825 8.86128 9.47617 10.99718 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.014851 B = 0.003742 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.947589 B = 7481.620983 C = 7847.333081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.086 3.914 3 N -0.301 5.301 4 N -0.375 5.375 5 C 0.104 3.896 6 C 0.093 3.907 7 C -0.242 4.242 8 C 0.233 3.767 9 H 0.080 0.920 10 C -0.116 4.116 11 C -0.132 4.132 12 C 0.122 3.878 13 N -1.014 6.014 14 S 2.599 3.401 15 O -0.950 6.950 16 O -0.965 6.965 17 C -0.590 4.590 18 C 0.029 3.971 19 C -0.520 4.520 20 H 0.061 0.939 21 C 0.058 3.942 22 N -0.891 5.891 23 Si 0.900 3.100 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.160 0.840 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.031 0.969 43 H 0.033 0.967 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.881 6.414 20.975 22.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.080 4.080 3 N -0.124 5.124 4 N -0.156 5.156 5 C -0.038 4.038 6 C -0.054 4.054 7 C -0.255 4.255 8 C 0.125 3.875 9 H 0.098 0.902 10 C -0.155 4.155 11 C -0.171 4.171 12 C -0.003 4.003 13 N -0.850 5.850 14 S 2.699 3.301 15 O -0.940 6.940 16 O -0.956 6.956 17 C -0.724 4.724 18 C -0.010 4.010 19 C -0.560 4.560 20 H 0.079 0.921 21 C -0.144 4.144 22 N -0.529 5.529 23 Si 0.727 3.273 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.201 1.201 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.177 0.823 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.049 0.951 43 H 0.051 0.949 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.752 8.320 20.465 22.104 hybrid contribution -0.868 -1.823 -0.845 2.188 sum -1.620 6.498 19.620 20.732 Atomic orbital electron populations 1.20180 0.86938 1.03485 1.02572 1.22030 0.96563 0.90057 0.99396 1.77206 0.86334 1.22685 1.26219 1.48179 1.05420 1.04642 1.57404 1.21815 0.83730 0.94718 1.03530 1.21949 0.98942 0.84568 0.99933 1.19995 0.92228 0.95616 1.17645 1.19371 0.89660 0.84163 0.94295 0.90230 1.22673 1.01885 0.95765 0.95212 1.22819 0.97971 0.96924 0.99406 1.21898 0.96846 0.92330 0.89223 1.59011 1.54004 1.44168 1.27804 1.05496 0.76154 0.75957 0.72538 1.93597 1.87009 1.31143 1.82275 1.93535 1.37689 1.79096 1.85293 1.30491 1.15309 1.13646 1.12910 1.18942 0.97866 0.99052 0.85096 1.20971 1.08853 1.31925 0.94217 0.92081 1.25067 0.95587 0.95957 0.97835 1.69946 1.26577 1.44247 1.12162 0.86531 0.81065 0.80661 0.79024 1.20045 1.21060 1.20051 0.90690 0.90949 0.90403 0.90670 0.89527 0.89774 0.82268 0.90693 0.90203 0.90261 0.90424 0.91772 0.90558 0.86427 0.86323 0.95103 0.94875 0.92487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.26 36.00 0.37 -0.39 16 2 C 0.09 1.24 7.22 -82.40 -0.59 0.64 16 3 N -0.30 -4.74 12.58 33.67 0.42 -4.32 16 4 N -0.38 -5.44 4.01 -68.16 -0.27 -5.71 16 5 C 0.10 1.02 11.47 59.85 0.69 1.71 16 6 C 0.09 1.38 9.24 -17.22 -0.16 1.22 16 7 C -0.24 -3.46 3.95 -105.05 -0.41 -3.88 16 8 C 0.23 2.84 3.34 -68.11 -0.23 2.61 16 9 H 0.08 0.91 7.39 -51.93 -0.38 0.53 16 10 C -0.12 -1.02 6.47 -24.89 -0.16 -1.18 16 11 C -0.13 -1.07 7.09 -24.58 -0.17 -1.24 16 12 C 0.12 1.34 6.85 -2.53 -0.02 1.32 16 13 N -1.01 -13.98 2.90 -105.64 -0.31 -14.29 16 14 S 2.60 48.11 5.52 -107.50 -0.59 47.51 16 15 O -0.95 -19.90 15.05 -57.54 -0.87 -20.76 16 16 O -0.97 -20.31 17.55 -57.54 -1.01 -21.32 16 17 C -0.59 -11.69 6.12 37.16 0.23 -11.47 16 18 C 0.03 0.77 4.98 -27.88 -0.14 0.63 16 19 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 20 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 22 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 23 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.72 7.35 -51.93 -0.38 0.34 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.16 2.19 8.02 -52.49 -0.42 1.77 16 34 H 0.07 0.66 7.84 -51.93 -0.41 0.26 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.12 2.09 8.14 -51.92 -0.42 1.67 16 41 H 0.12 2.15 8.14 -51.93 -0.42 1.73 16 42 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 373.92 15.07 5.63 5.63 Total: -1.00 -37.32 373.92 -9.34 -46.66 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -7.05 Total: -0.33 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: -1.01 Total: -23.35 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: 0.58 Total: -50.36 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: -1.88 Total: -42.08 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 48.11 SS G_CDS: -0.59 Total: 47.51 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.32 -9.34 -46.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366066289.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.409 kcal (2) G-P(sol) polarization free energy of solvation -37.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds