Wall clock time and date at job start Tue Mar 31 2020 15:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30846 * 125.89980 * 2 1 4 4 N 1.40078 * 108.20334 * 180.14772 * 3 2 1 5 5 C 1.46505 * 126.03720 * 179.85449 * 4 3 2 6 6 C 1.34949 * 107.92924 * 359.59176 * 4 3 2 7 7 C 1.35315 * 107.74403 * 0.24281 * 6 4 3 8 8 C 1.50699 * 126.03901 * 179.97438 * 7 6 4 9 9 H 1.09003 * 109.87328 * 213.48123 * 8 7 6 10 10 C 1.54327 * 109.88149 * 92.47032 * 8 7 6 11 11 C 1.55162 * 102.93959 * 218.38874 * 10 8 7 12 12 C 1.54906 * 101.58058 * 35.50331 * 11 10 8 13 13 N 1.47016 * 109.88469 * 334.66012 * 8 7 6 14 14 S 1.65600 * 125.64815 * 298.31765 * 13 8 7 15 15 O 1.42100 * 104.28100 * 29.75190 * 14 13 8 16 16 O 1.42098 * 104.27976 * 157.61516 * 14 13 8 17 17 C 1.81405 * 104.44656 * 273.68375 * 14 13 8 18 18 C 1.53003 * 109.47112 * 184.93896 * 17 14 13 19 19 C 1.50707 * 109.46875 * 179.97438 * 18 17 14 20 20 H 1.07996 * 119.99695 * 0.02562 * 19 18 17 21 21 C 1.37876 * 119.99502 * 180.02562 * 19 18 17 22 22 N 1.31518 * 120.00424 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99544 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47483 * 59.99996 * 23 21 19 25 25 H 1.48506 * 109.47202 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47333 * 299.99666 * 23 21 19 27 27 H 1.08997 * 109.47064 * 270.30123 * 1 2 3 28 28 H 1.09002 * 109.47071 * 30.30419 * 1 2 3 29 29 H 1.09002 * 109.47382 * 150.29948 * 1 2 3 30 30 H 1.08999 * 109.47470 * 269.69183 * 5 4 3 31 31 H 1.09006 * 109.46530 * 29.69173 * 5 4 3 32 32 H 1.08997 * 109.47062 * 149.68619 * 5 4 3 33 33 H 1.08001 * 126.12548 * 180.26359 * 6 4 3 34 34 H 1.08997 * 110.72056 * 336.74857 * 10 8 7 35 35 H 1.09000 * 110.71837 * 100.02603 * 10 8 7 36 36 H 1.08999 * 111.00129 * 153.57735 * 11 10 8 37 37 H 1.08997 * 111.00145 * 277.38971 * 11 10 8 38 38 H 1.08991 * 110.37119 * 81.82820 * 12 11 10 39 39 H 1.09005 * 110.36261 * 204.04261 * 12 11 10 40 40 H 1.09003 * 109.46992 * 304.94028 * 17 14 13 41 41 H 1.08997 * 109.47150 * 64.93670 * 17 14 13 42 42 H 1.08994 * 109.46824 * 299.99693 * 18 17 14 43 43 H 1.09002 * 109.46694 * 60.00548 * 18 17 14 44 44 H 0.96993 * 119.99887 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6341 -0.0034 5 6 4.7899 1.5007 -0.0076 6 6 3.6142 -0.7154 0.0037 7 6 2.3271 -1.1330 0.0059 8 6 1.8599 -2.5657 0.0129 9 1 0.9320 -2.6557 -0.5521 10 6 1.6379 -3.0383 1.4652 11 6 2.1508 -4.5024 1.4363 12 6 3.3379 -4.3966 0.4467 13 7 2.8927 -3.4314 -0.5748 14 16 3.4612 -3.3382 -2.1274 15 8 3.3254 -1.9655 -2.4686 16 8 4.7395 -3.9560 -2.0702 17 6 2.3073 -4.3513 -3.0933 18 6 2.7989 -4.4458 -4.5392 19 6 1.8406 -5.2879 -5.3415 20 1 0.9681 -5.7128 -4.8676 21 6 2.0779 -5.5159 -6.6804 22 7 3.1407 -4.9988 -7.2573 23 14 0.8897 -6.5591 -7.6750 24 1 -0.4574 -5.9346 -7.6507 25 1 1.3668 -6.6510 -9.0784 26 1 0.8148 -7.9207 -7.0871 27 1 -0.3633 0.0054 1.0276 28 1 -0.3633 0.8873 -0.5186 29 1 -0.3634 -0.8927 -0.5092 30 1 5.0832 1.7103 -1.0362 31 1 4.5561 2.4359 0.5013 32 1 5.6091 1.0009 0.5092 33 1 4.4891 -1.3485 0.0073 34 1 2.2248 -2.4377 2.1601 35 1 0.5796 -3.0054 1.7239 36 1 2.4915 -4.8165 2.4230 37 1 1.3839 -5.1776 1.0568 38 1 4.2260 -4.0255 0.9579 39 1 3.5401 -5.3665 -0.0080 40 1 2.2527 -5.3509 -2.6621 41 1 1.3185 -3.8931 -3.0749 42 1 2.8534 -3.4462 -4.9704 43 1 3.7877 -4.9040 -4.5575 44 1 3.3077 -5.1595 -8.1991 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366066289.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:20 Heat of formation + Delta-G solvation = -22.736729 kcal Electronic energy + Delta-G solvation = -26939.663361 eV Core-core repulsion = 23212.746648 eV Total energy + Delta-G solvation = -3726.916713 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -42.23821 -39.27955 -38.13380 -36.97002 -35.91235 -34.86862 -33.14354 -32.07341 -31.70245 -30.49084 -28.73556 -27.59891 -26.01775 -23.91831 -23.26201 -22.13569 -21.60878 -20.61508 -19.65550 -19.02957 -18.27444 -17.82801 -17.14159 -16.87410 -16.54242 -16.37851 -16.21070 -15.24497 -15.16195 -14.84530 -14.66154 -14.45646 -14.35740 -14.08972 -13.92510 -13.74486 -13.53102 -13.19660 -13.14998 -13.03694 -12.94084 -12.92215 -12.91095 -12.79922 -12.51446 -12.33301 -12.26044 -12.15597 -11.94778 -11.76285 -11.53428 -11.40087 -11.17258 -10.65553 -10.11581 -9.94639 -9.13150 -8.27290 -6.42148 -0.70569 0.97930 1.40081 1.44086 1.52230 1.69920 1.73095 1.91149 2.37475 2.85481 3.05810 3.14700 3.60867 3.73627 3.84914 3.93606 4.02360 4.11872 4.18105 4.21622 4.33260 4.36311 4.43695 4.52852 4.60026 4.70096 4.72084 4.85630 4.90518 4.95967 5.07553 5.10969 5.13556 5.20360 5.22836 5.23506 5.24434 5.35095 5.57305 5.60712 5.66162 5.85662 6.04182 6.14529 6.71161 6.81173 7.28353 8.84946 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.014851 B = 0.003742 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.947589 B = 7481.620983 C = 7847.333081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.074 3.926 3 N -0.333 5.333 4 N -0.385 5.385 5 C 0.094 3.906 6 C 0.071 3.929 7 C -0.251 4.251 8 C 0.223 3.777 9 H 0.090 0.910 10 C -0.106 4.106 11 C -0.120 4.120 12 C 0.107 3.893 13 N -1.005 6.005 14 S 2.624 3.376 15 O -0.979 6.979 16 O -0.996 6.996 17 C -0.591 4.591 18 C 0.024 3.976 19 C -0.541 4.541 20 H 0.077 0.923 21 C -0.004 4.004 22 N -0.936 5.936 23 Si 0.975 3.025 24 H -0.262 1.262 25 H -0.284 1.284 26 H -0.261 1.261 27 H 0.101 0.899 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.161 0.839 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.001 0.999 43 H 0.004 0.996 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.124 5.098 23.033 23.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.092 4.092 3 N -0.157 5.157 4 N -0.167 5.167 5 C -0.047 4.047 6 C -0.076 4.076 7 C -0.263 4.263 8 C 0.116 3.884 9 H 0.108 0.892 10 C -0.145 4.145 11 C -0.158 4.158 12 C -0.017 4.017 13 N -0.844 5.844 14 S 2.723 3.277 15 O -0.969 6.969 16 O -0.987 6.987 17 C -0.723 4.723 18 C -0.015 4.015 19 C -0.580 4.580 20 H 0.095 0.905 21 C -0.202 4.202 22 N -0.575 5.575 23 Si 0.798 3.202 24 H -0.187 1.187 25 H -0.209 1.209 26 H -0.185 1.185 27 H 0.119 0.881 28 H 0.088 0.912 29 H 0.108 0.892 30 H 0.089 0.911 31 H 0.119 0.881 32 H 0.127 0.873 33 H 0.179 0.821 34 H 0.093 0.907 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.107 0.893 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.158 0.842 41 H 0.155 0.845 42 H 0.019 0.981 43 H 0.023 0.977 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.997 7.000 22.523 23.775 hybrid contribution -0.110 -1.356 -1.407 1.957 sum -3.107 5.644 21.116 22.077 Atomic orbital electron populations 1.20341 0.84519 1.03922 1.04397 1.22660 0.98241 0.89689 0.98596 1.77135 0.87213 1.23897 1.27455 1.48540 1.05929 1.05014 1.57180 1.22117 0.83346 0.95331 1.03865 1.22180 0.99544 0.85092 1.00794 1.20337 0.92072 0.96763 1.17148 1.19764 0.89067 0.82835 0.96731 0.89236 1.22663 1.03635 0.95854 0.92317 1.22826 0.96659 0.96666 0.99680 1.22270 0.98704 0.91571 0.89158 1.58560 1.54505 1.45202 1.26130 1.04403 0.75266 0.74721 0.73355 1.93557 1.87224 1.32529 1.83578 1.93486 1.39469 1.79471 1.86233 1.30414 1.16590 1.15876 1.09387 1.18780 0.96722 0.96876 0.89150 1.21491 1.09512 1.32000 0.94959 0.90523 1.26150 0.97444 0.97297 0.99328 1.70103 1.28832 1.45965 1.12619 0.85347 0.78679 0.79142 0.77003 1.18697 1.20916 1.18515 0.88074 0.91245 0.89201 0.91138 0.88064 0.87273 0.82130 0.90722 0.87508 0.87713 0.89329 0.91251 0.90508 0.84205 0.84481 0.98110 0.97724 0.92368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.39 10.26 71.23 0.73 -0.66 16 2 C 0.07 2.07 7.22 43.10 0.31 2.38 16 3 N -0.33 -10.47 12.58 -47.38 -0.60 -11.07 16 4 N -0.39 -11.21 4.01 -369.55 -1.48 -12.70 16 5 C 0.09 1.85 11.47 127.77 1.47 3.31 16 6 C 0.07 2.10 9.24 83.54 0.77 2.87 16 7 C -0.25 -6.91 3.95 -20.14 -0.08 -6.99 16 8 C 0.22 4.93 3.34 44.60 0.15 5.08 16 9 H 0.09 1.80 7.39 -2.39 -0.02 1.78 16 10 C -0.11 -1.45 6.47 31.79 0.21 -1.24 16 11 C -0.12 -1.44 7.09 31.99 0.23 -1.21 16 12 C 0.11 2.11 6.85 86.85 0.59 2.70 16 13 N -1.01 -26.30 2.90 -488.14 -1.41 -27.71 16 14 S 2.62 98.06 5.52 -56.49 -0.31 97.75 16 15 O -0.98 -42.06 15.05 -127.65 -1.92 -43.98 16 16 O -1.00 -42.90 17.55 -127.65 -2.24 -45.14 16 17 C -0.59 -23.33 6.12 71.98 0.44 -22.89 16 18 C 0.02 1.27 4.98 29.85 0.15 1.42 16 19 C -0.54 -30.50 9.11 25.60 0.23 -30.27 16 20 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 21 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 22 N -0.94 -57.81 13.29 21.45 0.28 -57.52 16 23 Si 0.98 43.50 29.54 68.60 2.03 45.52 16 24 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 25 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 26 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 27 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.09 1.45 7.35 -2.39 -0.02 1.43 16 30 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 32 H 0.11 1.52 8.14 -2.39 -0.02 1.51 16 33 H 0.16 4.50 8.02 -2.91 -0.02 4.47 16 34 H 0.07 1.07 7.84 -2.39 -0.02 1.05 16 35 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 40 H 0.14 4.80 8.14 -2.39 -0.02 4.78 16 41 H 0.14 4.83 8.14 -2.39 -0.02 4.81 16 42 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 43 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 44 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -83.65 373.92 0.98 -82.67 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 0.98 Total: 17.42 kcal Atomic # 6 Polarization: -50.91 SS G_CDS: 5.66 Total: -45.25 kcal Atomic # 7 Polarization: -105.79 SS G_CDS: -3.21 Total: -109.00 kcal Atomic # 8 Polarization: -84.95 SS G_CDS: -4.16 Total: -89.11 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: 98.06 SS G_CDS: -0.31 Total: 97.75 kcal Total: -83.65 0.98 -82.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366066289.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.931 kcal (2) G-P(sol) polarization free energy of solvation -83.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds