Wall clock time and date at job start Tue Mar 31 2020 15:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.33497 * 126.72310 * 2 1 4 4 N 1.20655 * 113.38169 * 180.30518 * 3 2 1 5 5 C 1.30828 * 112.10641 * 359.74315 * 4 3 2 6 6 C 1.48398 * 127.44096 * 179.97438 * 5 4 3 7 7 C 1.39741 * 120.90328 * 144.74271 * 6 5 4 8 8 C 1.38038 * 119.01848 * 179.77938 * 7 6 5 9 9 N 1.31888 * 120.87987 * 0.51527 * 8 7 6 10 10 C 1.31892 * 122.01031 * 359.73226 * 9 8 7 11 11 C 1.38034 * 120.87877 * 0.02562 * 10 9 8 12 12 C 1.37209 * 126.72155 * 179.86863 * 2 1 3 13 13 C 1.47297 * 128.58327 * 0.02562 * 12 2 1 14 14 O 1.21614 * 119.99661 * 269.67062 * 13 12 2 15 15 N 1.34777 * 120.00080 * 89.67467 * 13 12 2 16 16 C 1.46498 * 119.99966 * 180.02562 * 15 13 12 17 17 C 1.53000 * 109.47299 * 184.79547 * 16 15 13 18 18 C 1.50704 * 115.54588 * 294.81766 * 17 16 15 19 19 H 1.07999 * 119.99785 * 95.20816 * 18 17 16 20 20 C 1.37877 * 119.99726 * 274.92551 * 18 17 16 21 21 N 1.31515 * 120.00084 * 355.41881 * 20 18 17 22 22 Si 1.86796 * 120.00102 * 175.42113 * 20 18 17 23 23 H 1.48504 * 109.47025 * 89.99775 * 22 20 18 24 24 H 1.48493 * 109.47332 * 210.00070 * 22 20 18 25 25 H 1.48499 * 109.47076 * 330.00113 * 22 20 18 26 26 C 1.53001 * 117.49754 * 80.48183 * 17 16 15 27 27 C 1.52994 * 117.50156 * 149.14359 * 17 16 15 28 28 H 1.08997 * 109.47141 * 270.13163 * 1 2 3 29 29 H 1.09000 * 109.46875 * 30.13112 * 1 2 3 30 30 H 1.08998 * 109.47002 * 150.13244 * 1 2 3 31 31 H 1.08001 * 120.49388 * 0.02562 * 7 6 5 32 32 H 1.08001 * 119.56183 * 180.27426 * 8 7 6 33 33 H 1.07995 * 119.56192 * 180.02562 * 10 9 8 34 34 H 1.08003 * 120.48684 * 179.97438 * 11 10 9 35 35 H 0.96999 * 119.99492 * 359.97438 * 15 13 12 36 36 H 1.09001 * 109.47302 * 64.79393 * 16 15 13 37 37 H 1.09005 * 109.46853 * 304.79585 * 16 15 13 38 38 H 0.97004 * 120.00173 * 185.00091 * 21 20 18 39 39 H 1.09003 * 117.49648 * 214.99946 * 26 17 16 40 40 H 1.08991 * 117.50066 * 0.03054 * 26 17 16 41 41 H 1.08996 * 117.49909 * 359.97438 * 27 17 16 42 42 H 1.09006 * 117.50020 * 144.97002 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3053 1.0700 0.0000 4 7 3.4793 0.7916 -0.0059 5 6 3.6786 -0.5014 -0.0054 6 6 4.9806 -1.2135 -0.0120 7 6 5.1444 -2.4160 0.6807 8 6 6.3712 -3.0479 0.6444 9 7 7.3819 -2.5261 -0.0232 10 6 7.2706 -1.3911 -0.6857 11 6 6.0779 -0.6966 -0.7059 12 6 2.3275 -1.0998 0.0025 13 6 1.9538 -2.5246 0.0053 14 8 1.8050 -3.1121 1.0596 15 7 1.7768 -3.1771 -1.1606 16 6 1.4047 -4.5940 -1.1579 17 6 1.3846 -5.1189 -2.5949 18 6 0.3373 -4.5133 -3.4935 19 1 0.5899 -3.6791 -4.1312 20 6 -0.9417 -5.0279 -3.5057 21 7 -1.2250 -6.1023 -2.8021 22 14 -2.2723 -4.1992 -4.5216 23 1 -2.2903 -4.7851 -5.8861 24 1 -3.5923 -4.4100 -3.8749 25 1 -1.9920 -2.7437 -4.6116 26 6 2.7254 -5.4971 -3.2276 27 6 1.7380 -6.5913 -2.8142 28 1 -0.3633 0.0024 1.0276 29 1 -0.3633 0.8888 -0.5159 30 1 -0.3633 -0.8912 -0.5118 31 1 4.3223 -2.8467 1.2330 32 1 6.5062 -3.9800 1.1730 33 1 8.1240 -0.9999 -1.2195 34 1 5.9940 0.2325 -1.2501 35 1 1.8952 -2.7083 -2.0015 36 1 0.4152 -4.7090 -0.7153 37 1 2.1315 -5.1594 -0.5746 38 1 -2.1044 -6.5067 -2.8669 39 1 2.8499 -5.3079 -4.2938 40 1 3.6216 -5.3724 -2.6200 41 1 1.9851 -7.1859 -1.9348 42 1 1.2126 -7.1221 -3.6082 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366754270.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:33 Heat of formation + Delta-G solvation = 80.339975 kcal Electronic energy + Delta-G solvation = -27497.191262 eV Core-core repulsion = 23639.300339 eV Total energy + Delta-G solvation = -3857.890923 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.97917 -40.18360 -39.16862 -36.78847 -34.82676 -33.78434 -33.35391 -32.04864 -31.60883 -31.41217 -28.29477 -26.77657 -25.56134 -24.84876 -23.84895 -23.18032 -21.26744 -20.86119 -19.91585 -19.44577 -17.91258 -17.80217 -17.29610 -16.28737 -16.18270 -16.03738 -15.67464 -15.16559 -14.88161 -14.61089 -14.08557 -14.03412 -13.89595 -13.76609 -13.36810 -13.28474 -13.16931 -12.76529 -12.62230 -11.99912 -11.96663 -11.69987 -11.51509 -11.08117 -11.03713 -10.94552 -10.61827 -10.33201 -10.01103 -9.71882 -9.55847 -9.43717 -9.39933 -9.33228 -9.15171 -8.60176 -8.44491 -8.23850 -6.16264 -4.26724 0.58549 0.97242 1.24522 2.02711 2.63573 2.76797 3.18448 3.27191 3.27734 3.45588 3.64125 3.83313 4.17020 4.27054 4.29831 4.72898 4.79200 4.89241 4.94366 4.95398 5.11184 5.11703 5.26678 5.29073 5.41086 5.43540 5.48087 5.63810 5.80751 5.84566 5.92616 6.05042 6.23744 6.35811 6.43451 6.47090 6.62562 6.71310 7.03696 7.04492 7.27185 7.44663 7.72196 7.78094 8.00631 8.01884 8.24119 8.54289 8.75020 9.40945 10.90637 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011593 B = 0.004287 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.721537 B = 6529.520712 C = 7976.718587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.020 3.980 3 O 0.105 5.895 4 N -0.341 5.341 5 C 0.081 3.919 6 C 0.025 3.975 7 C -0.141 4.141 8 C 0.105 3.895 9 N -0.478 5.478 10 C 0.099 3.901 11 C -0.145 4.145 12 C -0.226 4.226 13 C 0.585 3.415 14 O -0.540 6.540 15 N -0.685 5.685 16 C 0.162 3.838 17 C 0.022 3.978 18 C -0.502 4.502 19 H 0.059 0.941 20 C 0.075 3.925 21 N -0.873 5.873 22 Si 0.889 3.111 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.273 1.273 26 C -0.210 4.210 27 C -0.139 4.139 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.145 0.855 32 H 0.163 0.837 33 H 0.161 0.839 34 H 0.139 0.861 35 H 0.404 0.596 36 H 0.072 0.928 37 H 0.044 0.956 38 H 0.262 0.738 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.176 10.841 4.522 14.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.043 4.043 3 O 0.039 5.961 4 N -0.043 5.043 5 C -0.079 4.079 6 C 0.016 3.984 7 C -0.162 4.162 8 C -0.052 4.052 9 N -0.187 5.187 10 C -0.058 4.058 11 C -0.165 4.165 12 C -0.234 4.234 13 C 0.368 3.632 14 O -0.418 6.418 15 N -0.333 5.333 16 C 0.040 3.960 17 C 0.021 3.979 18 C -0.539 4.539 19 H 0.078 0.922 20 C -0.130 4.130 21 N -0.509 5.509 22 Si 0.716 3.284 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.198 1.198 26 C -0.248 4.248 27 C -0.178 4.178 28 H 0.114 0.886 29 H 0.110 0.890 30 H 0.120 0.880 31 H 0.163 0.837 32 H 0.180 0.820 33 H 0.178 0.822 34 H 0.157 0.843 35 H 0.238 0.762 36 H 0.090 0.910 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.459 10.933 5.348 15.414 hybrid contribution -1.915 0.283 -1.012 2.184 sum 7.544 11.216 4.336 14.196 Atomic orbital electron populations 1.20539 0.82650 1.05682 1.04921 1.24607 0.96118 0.84625 0.98923 1.84490 1.10982 1.33169 1.67468 1.73917 0.95967 1.15602 1.18859 1.22764 0.92909 0.88818 1.03392 1.17907 0.89365 0.93986 0.97181 1.22391 1.00062 0.94538 0.99182 1.22739 0.87884 0.99136 0.95395 1.67626 1.32716 1.11509 1.06889 1.22706 0.96604 0.90688 0.95798 1.22199 0.93110 1.01395 0.99840 1.22115 0.91657 0.96158 1.13429 1.16814 0.78093 0.83470 0.84820 1.90799 1.52268 1.67549 1.31218 1.46020 1.66850 1.13038 1.07375 1.21122 0.99268 0.77626 0.98003 1.19034 0.92495 0.95132 0.91191 1.20332 0.93178 1.16983 1.23420 0.92238 1.24979 0.98269 0.94849 0.94863 1.69984 1.21975 1.19515 1.39431 0.86644 0.81430 0.80067 0.80212 1.20640 1.21101 1.19768 1.23018 0.93572 1.08191 0.99987 1.22468 1.01431 0.92366 1.01493 0.88560 0.89006 0.88019 0.83685 0.81981 0.82197 0.84339 0.76178 0.90960 0.93778 0.92783 0.90366 0.91760 0.91754 0.89437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.32 36.01 0.37 -0.42 16 2 C 0.02 0.26 7.53 -34.68 -0.26 0.00 16 3 O 0.11 1.37 11.05 18.64 0.21 1.58 16 4 N -0.34 -4.89 12.06 34.60 0.42 -4.47 16 5 C 0.08 1.20 7.08 -80.21 -0.57 0.64 16 6 C 0.02 0.35 5.90 -104.59 -0.62 -0.27 16 7 C -0.14 -1.95 9.44 -39.09 -0.37 -2.31 16 8 C 0.10 1.32 11.17 -17.60 -0.20 1.12 16 9 N -0.48 -6.18 10.34 -13.33 -0.14 -6.32 16 10 C 0.10 1.11 11.17 -17.60 -0.20 0.91 16 11 C -0.14 -1.73 9.89 -39.10 -0.39 -2.11 16 12 C -0.23 -3.47 6.21 -102.69 -0.64 -4.11 16 13 C 0.59 10.40 6.51 -12.58 -0.08 10.32 16 14 O -0.54 -11.09 16.53 5.27 0.09 -11.01 16 15 N -0.69 -12.54 5.48 -61.42 -0.34 -12.87 16 16 C 0.16 3.42 5.50 -4.04 -0.02 3.40 16 17 C 0.02 0.50 1.47 -155.66 -0.23 0.27 16 18 C -0.50 -12.25 8.59 -34.44 -0.30 -12.55 16 19 H 0.06 1.44 7.82 -52.49 -0.41 1.03 16 20 C 0.07 1.88 5.43 -17.82 -0.10 1.79 16 21 N -0.87 -23.08 12.65 55.43 0.70 -22.38 16 22 Si 0.89 19.55 29.54 -169.99 -5.02 14.53 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 26 C -0.21 -4.26 9.96 -26.69 -0.27 -4.52 16 27 C -0.14 -3.07 9.14 -26.70 -0.24 -3.32 16 28 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.10 1.13 8.10 -51.93 -0.42 0.71 16 31 H 0.15 2.16 6.77 -52.49 -0.36 1.80 16 32 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 33 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.14 1.43 8.06 -52.48 -0.42 1.01 16 35 H 0.40 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.07 1.71 8.14 -51.93 -0.42 1.29 16 37 H 0.04 0.92 8.09 -51.93 -0.42 0.50 16 38 H 0.26 6.69 8.32 -40.82 -0.34 6.35 16 39 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 41 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.09 2.08 8.14 -51.93 -0.42 1.66 16 LS Contribution 372.87 15.07 5.62 5.62 Total: -1.00 -29.21 372.87 -7.87 -37.08 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -5.31 Total: 9.42 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -4.10 Total: -11.18 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 0.64 Total: -46.04 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.29 Total: -9.43 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.21 -7.87 -37.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366754270.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.417 kcal (2) G-P(sol) polarization free energy of solvation -29.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds