Wall clock time and date at job start Tue Mar 31 2020 15:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.33497 * 126.72310 * 2 1 4 4 N 1.20655 * 113.38169 * 180.30518 * 3 2 1 5 5 C 1.30828 * 112.10641 * 359.74315 * 4 3 2 6 6 C 1.48398 * 127.44096 * 179.97438 * 5 4 3 7 7 C 1.39741 * 120.90328 * 144.74271 * 6 5 4 8 8 C 1.38038 * 119.01848 * 179.77938 * 7 6 5 9 9 N 1.31888 * 120.87987 * 0.51527 * 8 7 6 10 10 C 1.31892 * 122.01031 * 359.73226 * 9 8 7 11 11 C 1.38034 * 120.87877 * 0.02562 * 10 9 8 12 12 C 1.37209 * 126.72155 * 179.86863 * 2 1 3 13 13 C 1.47297 * 128.58327 * 0.02562 * 12 2 1 14 14 O 1.21614 * 119.99661 * 269.67062 * 13 12 2 15 15 N 1.34777 * 120.00080 * 89.67467 * 13 12 2 16 16 C 1.46498 * 119.99966 * 180.02562 * 15 13 12 17 17 C 1.53000 * 109.47299 * 184.79547 * 16 15 13 18 18 C 1.50704 * 115.54588 * 294.81766 * 17 16 15 19 19 H 1.07999 * 119.99785 * 95.20816 * 18 17 16 20 20 C 1.37877 * 119.99726 * 274.92551 * 18 17 16 21 21 N 1.31515 * 120.00084 * 355.41881 * 20 18 17 22 22 Si 1.86796 * 120.00102 * 175.42113 * 20 18 17 23 23 H 1.48504 * 109.47025 * 89.99775 * 22 20 18 24 24 H 1.48493 * 109.47332 * 210.00070 * 22 20 18 25 25 H 1.48499 * 109.47076 * 330.00113 * 22 20 18 26 26 C 1.53001 * 117.49754 * 80.48183 * 17 16 15 27 27 C 1.52994 * 117.50156 * 149.14359 * 17 16 15 28 28 H 1.08997 * 109.47141 * 270.13163 * 1 2 3 29 29 H 1.09000 * 109.46875 * 30.13112 * 1 2 3 30 30 H 1.08998 * 109.47002 * 150.13244 * 1 2 3 31 31 H 1.08001 * 120.49388 * 0.02562 * 7 6 5 32 32 H 1.08001 * 119.56183 * 180.27426 * 8 7 6 33 33 H 1.07995 * 119.56192 * 180.02562 * 10 9 8 34 34 H 1.08003 * 120.48684 * 179.97438 * 11 10 9 35 35 H 0.96999 * 119.99492 * 359.97438 * 15 13 12 36 36 H 1.09001 * 109.47302 * 64.79393 * 16 15 13 37 37 H 1.09005 * 109.46853 * 304.79585 * 16 15 13 38 38 H 0.97004 * 120.00173 * 185.00091 * 21 20 18 39 39 H 1.09003 * 117.49648 * 214.99946 * 26 17 16 40 40 H 1.08991 * 117.50066 * 0.03054 * 26 17 16 41 41 H 1.08996 * 117.49909 * 359.97438 * 27 17 16 42 42 H 1.09006 * 117.50020 * 144.97002 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3053 1.0700 0.0000 4 7 3.4793 0.7916 -0.0059 5 6 3.6786 -0.5014 -0.0054 6 6 4.9806 -1.2135 -0.0120 7 6 5.1444 -2.4160 0.6807 8 6 6.3712 -3.0479 0.6444 9 7 7.3819 -2.5261 -0.0232 10 6 7.2706 -1.3911 -0.6857 11 6 6.0779 -0.6966 -0.7059 12 6 2.3275 -1.0998 0.0025 13 6 1.9538 -2.5246 0.0053 14 8 1.8050 -3.1121 1.0596 15 7 1.7768 -3.1771 -1.1606 16 6 1.4047 -4.5940 -1.1579 17 6 1.3846 -5.1189 -2.5949 18 6 0.3373 -4.5133 -3.4935 19 1 0.5899 -3.6791 -4.1312 20 6 -0.9417 -5.0279 -3.5057 21 7 -1.2250 -6.1023 -2.8021 22 14 -2.2723 -4.1992 -4.5216 23 1 -2.2903 -4.7851 -5.8861 24 1 -3.5923 -4.4100 -3.8749 25 1 -1.9920 -2.7437 -4.6116 26 6 2.7254 -5.4971 -3.2276 27 6 1.7380 -6.5913 -2.8142 28 1 -0.3633 0.0024 1.0276 29 1 -0.3633 0.8888 -0.5159 30 1 -0.3633 -0.8912 -0.5118 31 1 4.3223 -2.8467 1.2330 32 1 6.5062 -3.9800 1.1730 33 1 8.1240 -0.9999 -1.2195 34 1 5.9940 0.2325 -1.2501 35 1 1.8952 -2.7083 -2.0015 36 1 0.4152 -4.7090 -0.7153 37 1 2.1315 -5.1594 -0.5746 38 1 -2.1044 -6.5067 -2.8669 39 1 2.8499 -5.3079 -4.2938 40 1 3.6216 -5.3724 -2.6200 41 1 1.9851 -7.1859 -1.9348 42 1 1.2126 -7.1221 -3.6082 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366754270.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:32 Heat of formation + Delta-G solvation = 63.733446 kcal Electronic energy + Delta-G solvation = -27497.911375 eV Core-core repulsion = 23639.300339 eV Total energy + Delta-G solvation = -3858.611036 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -46.07729 -41.16127 -40.64532 -38.50383 -35.90751 -35.11859 -34.64524 -33.94679 -32.64048 -32.34597 -29.37995 -28.27028 -27.32898 -26.03557 -24.91716 -24.26578 -22.96050 -22.01749 -21.39943 -21.00362 -19.12492 -18.98722 -18.42970 -17.93978 -17.24097 -17.12603 -16.86320 -16.66437 -16.54667 -16.10580 -15.57368 -15.19907 -14.97976 -14.71095 -14.67939 -14.44627 -14.27561 -14.14556 -13.66287 -13.59257 -13.48001 -12.94643 -12.93490 -12.81597 -12.58653 -12.35170 -12.05701 -12.00308 -11.56652 -11.27064 -10.96885 -10.68248 -10.57047 -10.44776 -10.42383 -10.27065 -10.13197 -9.95138 -8.08416 -6.23186 -0.44354 0.03627 0.16989 0.93168 1.28232 1.43872 1.47373 1.54828 1.64476 2.21612 2.43751 2.61222 2.69694 3.11971 3.19272 3.44180 3.46843 3.71744 3.74844 3.84183 3.90906 3.99797 4.13008 4.19591 4.30988 4.49564 4.51375 4.55445 4.62563 4.65012 4.69603 4.74395 4.84799 4.94655 4.99765 5.04374 5.08241 5.27409 5.43351 5.52736 5.55232 5.66694 5.78167 6.36253 6.53248 6.83722 6.84501 6.93347 7.09210 7.47019 8.98193 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011593 B = 0.004287 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.721537 B = 6529.520712 C = 7976.718587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.043 3.957 3 O 0.114 5.886 4 N -0.347 5.347 5 C 0.079 3.921 6 C 0.006 3.994 7 C -0.155 4.155 8 C 0.103 3.897 9 N -0.492 5.492 10 C 0.104 3.896 11 C -0.143 4.143 12 C -0.259 4.259 13 C 0.597 3.403 14 O -0.571 6.571 15 N -0.681 5.681 16 C 0.180 3.820 17 C 0.004 3.996 18 C -0.505 4.505 19 H 0.061 0.939 20 C 0.030 3.970 21 N -0.905 5.905 22 Si 0.946 3.054 23 H -0.281 1.281 24 H -0.290 1.290 25 H -0.261 1.261 26 C -0.182 4.182 27 C -0.149 4.149 28 H 0.113 0.887 29 H 0.124 0.876 30 H 0.088 0.912 31 H 0.127 0.873 32 H 0.181 0.819 33 H 0.196 0.804 34 H 0.156 0.844 35 H 0.409 0.591 36 H 0.039 0.961 37 H 0.044 0.956 38 H 0.260 0.740 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.029 12.870 3.722 16.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.020 4.020 3 O 0.048 5.952 4 N -0.050 5.050 5 C -0.081 4.081 6 C -0.003 4.003 7 C -0.176 4.176 8 C -0.053 4.053 9 N -0.202 5.202 10 C -0.052 4.052 11 C -0.163 4.163 12 C -0.266 4.266 13 C 0.382 3.618 14 O -0.452 6.452 15 N -0.329 5.329 16 C 0.056 3.944 17 C 0.004 3.996 18 C -0.543 4.543 19 H 0.079 0.921 20 C -0.172 4.172 21 N -0.542 5.542 22 Si 0.772 3.228 23 H -0.207 1.207 24 H -0.216 1.216 25 H -0.185 1.185 26 C -0.220 4.220 27 C -0.187 4.187 28 H 0.131 0.869 29 H 0.143 0.857 30 H 0.107 0.893 31 H 0.145 0.855 32 H 0.198 0.802 33 H 0.213 0.787 34 H 0.173 0.827 35 H 0.244 0.756 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.326 12.991 4.534 17.204 hybrid contribution -2.142 -0.312 -0.756 2.293 sum 8.184 12.679 3.778 15.557 Atomic orbital electron populations 1.20753 0.80362 1.06597 1.06265 1.25079 0.97122 0.83721 0.96097 1.84491 1.10716 1.32878 1.67068 1.73895 0.96463 1.15231 1.19378 1.22908 0.93067 0.88932 1.03157 1.18113 0.89812 0.94285 0.98111 1.22302 1.00197 0.95122 1.00017 1.23017 0.87350 0.99659 0.95259 1.67717 1.32693 1.12369 1.07418 1.23298 0.97371 0.89789 0.94773 1.22420 0.92630 1.01932 0.99341 1.21857 0.92859 0.95158 1.16772 1.16965 0.76736 0.84281 0.83863 1.90774 1.53489 1.68674 1.32254 1.45863 1.66982 1.12040 1.07975 1.20699 0.97460 0.79241 0.96994 1.19082 0.93638 0.95280 0.91630 1.20601 0.93725 1.16739 1.23240 0.92087 1.25642 1.00210 0.95308 0.95998 1.70101 1.22191 1.20895 1.41010 0.85736 0.78773 0.79713 0.78540 1.20739 1.21566 1.18527 1.22980 0.93151 1.05512 1.00307 1.22383 1.02531 0.92479 1.01310 0.86876 0.85732 0.89343 0.85454 0.80203 0.78710 0.82667 0.75553 0.94258 0.93814 0.93128 0.89974 0.89861 0.91057 0.91629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 10.32 71.24 0.74 -0.71 16 2 C 0.04 1.05 7.53 25.44 0.19 1.24 16 3 O 0.11 2.76 11.05 76.96 0.85 3.61 16 4 N -0.35 -9.43 12.06 -45.02 -0.54 -9.97 16 5 C 0.08 2.29 7.08 44.53 0.32 2.61 16 6 C 0.01 0.16 5.90 -19.84 -0.12 0.04 16 7 C -0.16 -4.29 9.44 22.59 0.21 -4.08 16 8 C 0.10 2.51 11.17 84.64 0.95 3.45 16 9 N -0.49 -11.86 10.34 -196.08 -2.03 -13.89 16 10 C 0.10 2.08 11.17 84.64 0.95 3.03 16 11 C -0.14 -3.13 9.89 22.58 0.22 -2.91 16 12 C -0.26 -7.81 6.21 -18.61 -0.12 -7.93 16 13 C 0.60 21.41 6.51 86.63 0.56 21.97 16 14 O -0.57 -24.08 16.53 -4.07 -0.07 -24.15 16 15 N -0.68 -25.00 5.48 -466.50 -2.55 -27.56 16 16 C 0.18 7.69 5.50 86.38 0.48 8.17 16 17 C 0.00 0.20 1.47 -52.93 -0.08 0.12 16 18 C -0.51 -24.58 8.59 25.60 0.22 -24.36 16 19 H 0.06 2.89 7.82 -2.91 -0.02 2.87 16 20 C 0.03 1.49 5.43 84.65 0.46 1.95 16 21 N -0.90 -48.68 12.65 21.45 0.27 -48.41 16 22 Si 0.95 39.96 29.54 68.60 2.03 41.99 16 23 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.29 -12.35 7.11 99.48 0.71 -11.65 16 25 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 26 C -0.18 -7.16 9.96 30.62 0.30 -6.86 16 27 C -0.15 -6.59 9.14 30.62 0.28 -6.31 16 28 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.09 1.85 8.10 -2.39 -0.02 1.83 16 31 H 0.13 3.94 6.77 -2.91 -0.02 3.92 16 32 H 0.18 3.50 8.06 -2.91 -0.02 3.47 16 33 H 0.20 2.38 8.06 -2.91 -0.02 2.36 16 34 H 0.16 2.82 8.06 -2.91 -0.02 2.79 16 35 H 0.41 14.14 8.31 -92.71 -0.77 13.37 16 36 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.04 1.85 8.09 -2.38 -0.02 1.83 16 38 H 0.26 13.51 8.32 -92.71 -0.77 12.74 16 39 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 40 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 41 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 42 H 0.07 3.17 8.14 -2.38 -0.02 3.16 16 Total: -1.00 -62.95 372.87 3.81 -59.14 By element: Atomic # 1 Polarization: 29.53 SS G_CDS: 0.29 Total: 29.82 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: 5.56 Total: -10.58 kcal Atomic # 7 Polarization: -94.98 SS G_CDS: -4.85 Total: -99.83 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: 0.78 Total: -20.54 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.99 kcal Total: -62.95 3.81 -59.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366754270.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.875 kcal (2) G-P(sol) polarization free energy of solvation -62.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds