Wall clock time and date at job start Tue Mar 31 2020 15:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.33496 * 126.72574 * 2 1 4 4 N 1.20650 * 113.39295 * 179.66267 * 3 2 1 5 5 C 1.30842 * 112.10138 * 0.50157 * 4 3 2 6 6 C 1.48376 * 127.44345 * 179.79267 * 5 4 3 7 7 C 1.39292 * 119.72476 * 334.66275 * 6 5 4 8 8 C 1.38463 * 119.06852 * 179.78972 * 7 6 5 9 9 C 1.38732 * 118.50150 * 0.47678 * 8 7 6 10 10 C 1.38321 * 119.35746 * 359.50124 * 9 8 7 11 11 N 1.31702 * 120.89403 * 0.27754 * 10 9 8 12 12 C 1.37203 * 126.72655 * 179.97438 * 2 1 3 13 13 C 1.47301 * 128.58099 * 0.04148 * 12 2 1 14 14 O 1.21622 * 120.00187 * 269.99730 * 13 12 2 15 15 N 1.34776 * 120.00016 * 89.99525 * 13 12 2 16 16 C 1.46505 * 119.99912 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.46995 * 178.28233 * 16 15 13 18 18 C 1.50695 * 115.55132 * 65.13914 * 17 16 15 19 19 H 1.07994 * 120.00432 * 265.40067 * 18 17 16 20 20 C 1.37881 * 119.99853 * 85.40926 * 18 17 16 21 21 N 1.31518 * 119.99926 * 353.55038 * 20 18 17 22 22 Si 1.86799 * 120.00071 * 173.55541 * 20 18 17 23 23 H 1.48504 * 109.47361 * 59.99686 * 22 20 18 24 24 H 1.48501 * 109.47305 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47213 * 299.99971 * 22 20 18 26 26 C 1.53000 * 117.49703 * 279.46996 * 17 16 15 27 27 C 1.53004 * 117.49885 * 210.81216 * 17 16 15 28 28 H 1.08993 * 109.46890 * 270.04191 * 1 2 3 29 29 H 1.09005 * 109.46725 * 30.04933 * 1 2 3 30 30 H 1.09000 * 109.46526 * 150.04123 * 1 2 3 31 31 H 1.08002 * 120.46876 * 0.04288 * 7 6 5 32 32 H 1.08000 * 120.74580 * 180.23013 * 8 7 6 33 33 H 1.08003 * 120.31911 * 179.77852 * 9 8 7 34 34 H 1.08000 * 119.55405 * 180.25719 * 10 9 8 35 35 H 0.97000 * 120.00533 * 0.02562 * 15 13 12 36 36 H 1.08999 * 109.47121 * 298.27443 * 16 15 13 37 37 H 1.08994 * 109.47078 * 58.27905 * 16 15 13 38 38 H 0.96994 * 119.99398 * 185.06749 * 21 20 18 39 39 H 1.09006 * 117.49859 * 0.02562 * 26 17 16 40 40 H 1.09003 * 117.50292 * 145.02079 * 26 17 16 41 41 H 1.08992 * 117.49782 * 214.97990 * 27 17 16 42 42 H 1.08997 * 117.49599 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3053 1.0700 0.0000 4 7 3.4793 0.7918 0.0065 5 6 3.6788 -0.5013 0.0014 6 6 4.9806 -1.2133 0.0024 7 6 6.1127 -0.5832 -0.5089 8 6 7.3215 -1.2584 -0.4973 9 6 7.3553 -2.5466 0.0167 10 6 6.1922 -3.1111 0.5086 11 7 5.0565 -2.4446 0.4896 12 6 2.3275 -1.0997 0.0005 13 6 1.9539 -2.5245 0.0003 14 8 1.7991 -3.1128 1.0535 15 7 1.7836 -3.1764 -1.1670 16 6 1.4114 -4.5934 -1.1672 17 6 1.2411 -5.0757 -2.6091 18 6 2.4928 -5.0712 -3.4482 19 1 2.7181 -4.2229 -4.0775 20 6 3.3506 -6.1501 -3.4126 21 7 3.1449 -7.1256 -2.5548 22 14 4.8047 -6.2263 -4.5826 23 1 5.6896 -5.0568 -4.3493 24 1 5.5669 -7.4784 -4.3442 25 1 4.3142 -6.2041 -5.9841 26 6 -0.0804 -4.7544 -3.3101 27 6 0.2222 -6.1878 -2.8664 28 1 -0.3633 0.0008 1.0276 29 1 -0.3633 0.8896 -0.5146 30 1 -0.3632 -0.8904 -0.5132 31 1 6.0495 0.4196 -0.9051 32 1 8.2170 -0.7943 -0.8834 33 1 8.2816 -3.1014 0.0368 34 1 6.2158 -4.1121 0.9133 35 1 1.9073 -2.7074 -2.0070 36 1 2.1941 -5.1746 -0.6798 37 1 0.4733 -4.7227 -0.6275 38 1 3.7877 -7.8480 -2.4786 39 1 -0.8283 -4.1989 -2.7441 40 1 -0.0445 -4.5400 -4.3782 41 1 0.4572 -6.9159 -3.6427 42 1 -0.3264 -6.5760 -2.0083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374024611.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:30 Heat of formation + Delta-G solvation = 84.686328 kcal Electronic energy + Delta-G solvation = -27700.925163 eV Core-core repulsion = 23843.222712 eV Total energy + Delta-G solvation = -3857.702451 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.84059 -40.02957 -38.87487 -36.67394 -34.26362 -33.60872 -33.14780 -32.48577 -31.98293 -30.71977 -28.19012 -26.61112 -25.44892 -24.67370 -23.70380 -23.03697 -21.23435 -20.72493 -19.71073 -19.32956 -17.78896 -17.65704 -17.15702 -16.32784 -16.04007 -15.91141 -15.40485 -14.95640 -14.74376 -14.49252 -14.07663 -13.94378 -13.66888 -13.41624 -13.33484 -13.17322 -12.92630 -12.74602 -12.51671 -11.89337 -11.76233 -11.63127 -11.28017 -11.02495 -10.94079 -10.72738 -10.57510 -10.29942 -9.89311 -9.80410 -9.49776 -9.41760 -9.25626 -8.99439 -8.83017 -8.51389 -8.30855 -8.08894 -6.09329 -4.17528 0.65557 1.25730 1.38475 2.16369 2.80565 3.05443 3.23880 3.29569 3.31640 3.48557 3.84548 3.97925 4.25063 4.33460 4.74192 4.80916 4.92591 5.00597 5.03815 5.13439 5.18923 5.22484 5.30412 5.31570 5.45042 5.54439 5.63657 5.73790 5.86425 6.00459 6.01896 6.11117 6.31274 6.44479 6.53870 6.60483 6.66562 6.87460 7.07623 7.25585 7.41939 7.47330 7.79877 7.96108 8.14913 8.26519 8.32107 8.81563 8.85272 9.48982 10.98534 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.009366 B = 0.005490 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2988.868227 B = 5099.304728 C = 7128.890278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.002 3.998 3 O 0.106 5.894 4 N -0.342 5.342 5 C 0.095 3.905 6 C 0.189 3.811 7 C -0.142 4.142 8 C -0.078 4.078 9 C -0.163 4.163 10 C 0.114 3.886 11 N -0.444 5.444 12 C -0.203 4.203 13 C 0.595 3.405 14 O -0.532 6.532 15 N -0.690 5.690 16 C 0.166 3.834 17 C 0.028 3.972 18 C -0.500 4.500 19 H 0.058 0.942 20 C 0.077 3.923 21 N -0.873 5.873 22 Si 0.887 3.113 23 H -0.278 1.278 24 H -0.286 1.286 25 H -0.276 1.276 26 C -0.211 4.211 27 C -0.146 4.146 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.163 0.837 35 H 0.399 0.601 36 H 0.075 0.925 37 H 0.039 0.961 38 H 0.262 0.738 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.770 13.131 3.565 13.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.061 4.061 3 O 0.039 5.961 4 N -0.046 5.046 5 C -0.065 4.065 6 C 0.052 3.948 7 C -0.163 4.163 8 C -0.103 4.103 9 C -0.183 4.183 10 C -0.044 4.044 11 N -0.154 5.154 12 C -0.211 4.211 13 C 0.378 3.622 14 O -0.409 6.409 15 N -0.338 5.338 16 C 0.043 3.957 17 C 0.027 3.973 18 C -0.538 4.538 19 H 0.076 0.924 20 C -0.128 4.128 21 N -0.509 5.509 22 Si 0.714 3.286 23 H -0.204 1.204 24 H -0.212 1.212 25 H -0.202 1.202 26 C -0.248 4.248 27 C -0.185 4.185 28 H 0.112 0.888 29 H 0.108 0.892 30 H 0.114 0.886 31 H 0.156 0.844 32 H 0.156 0.844 33 H 0.157 0.843 34 H 0.181 0.819 35 H 0.233 0.767 36 H 0.093 0.907 37 H 0.057 0.943 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.719 13.126 4.673 14.039 hybrid contribution 1.579 -0.338 -1.390 2.131 sum 3.298 12.788 3.283 13.609 Atomic orbital electron populations 1.20442 0.82907 1.05120 1.04717 1.24515 0.95996 0.84798 1.00799 1.84465 1.10891 1.33110 1.67628 1.73857 0.96014 1.15410 1.19305 1.22471 0.92642 0.88435 1.02972 1.18213 0.89024 0.90590 0.96976 1.21997 0.92619 1.01331 1.00379 1.21504 0.97729 0.94455 0.96653 1.22311 1.00394 0.96163 0.99419 1.22823 0.86929 0.99528 0.95149 1.67566 1.28543 1.05997 1.13288 1.22154 0.91484 0.96253 1.11181 1.16631 0.77641 0.83297 0.84673 1.90775 1.51397 1.67297 1.31421 1.45883 1.68091 1.12705 1.07169 1.21033 0.98460 0.78467 0.97726 1.19019 0.88973 0.98292 0.91000 1.20273 1.05395 1.02785 1.25334 0.92424 1.24944 0.97429 0.95172 0.95211 1.69961 1.35317 1.11279 1.34302 0.86751 0.82654 0.77374 0.81777 1.20381 1.21180 1.20162 1.23027 1.01681 1.00198 0.99897 1.22486 1.03551 0.90824 1.01599 0.88772 0.89196 0.88573 0.84446 0.84355 0.84320 0.81939 0.76703 0.90700 0.94304 0.92793 0.91610 0.90385 0.89822 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.70 10.32 36.01 0.37 -0.32 16 2 C 0.00 0.02 7.53 -34.68 -0.26 -0.24 16 3 O 0.11 1.46 11.05 18.65 0.21 1.67 16 4 N -0.34 -5.33 11.99 34.60 0.41 -4.92 16 5 C 0.09 1.64 7.20 -80.21 -0.58 1.06 16 6 C 0.19 3.26 6.75 -82.95 -0.56 2.70 16 7 C -0.14 -1.98 9.77 -39.11 -0.38 -2.36 16 8 C -0.08 -0.91 10.17 -39.32 -0.40 -1.31 16 9 C -0.16 -1.98 10.11 -39.37 -0.40 -2.38 16 10 C 0.11 1.75 11.18 -17.58 -0.20 1.56 16 11 N -0.44 -8.26 9.79 -9.78 -0.10 -8.36 16 12 C -0.20 -3.52 6.24 -102.69 -0.64 -4.16 16 13 C 0.59 11.99 7.09 -12.58 -0.09 11.90 16 14 O -0.53 -12.48 17.11 5.26 0.09 -12.39 16 15 N -0.69 -13.92 5.47 -61.42 -0.34 -14.25 16 16 C 0.17 3.75 5.50 -4.04 -0.02 3.73 16 17 C 0.03 0.65 1.38 -155.66 -0.21 0.43 16 18 C -0.50 -12.85 8.63 -34.44 -0.30 -13.15 16 19 H 0.06 1.47 7.82 -52.49 -0.41 1.06 16 20 C 0.08 2.03 5.39 -17.82 -0.10 1.93 16 21 N -0.87 -23.98 12.91 55.43 0.72 -23.27 16 22 Si 0.89 20.56 29.55 -169.99 -5.02 15.54 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 C -0.21 -4.27 9.96 -26.69 -0.27 -4.53 16 27 C -0.15 -3.28 9.42 -26.69 -0.25 -3.53 16 28 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.10 0.94 8.10 -51.93 -0.42 0.52 16 31 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 32 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 33 H 0.14 1.24 8.06 -52.48 -0.42 0.81 16 34 H 0.16 2.20 8.06 -52.49 -0.42 1.78 16 35 H 0.40 7.63 8.35 -40.82 -0.34 7.28 16 36 H 0.07 1.97 8.14 -51.93 -0.42 1.55 16 37 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 38 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 41 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 42 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 375.71 15.07 5.66 5.66 Total: -1.00 -32.20 375.71 -8.02 -40.22 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -5.38 Total: 8.76 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -4.28 Total: -8.66 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: 0.70 Total: -50.80 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.30 Total: -10.73 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.20 -8.02 -40.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374024611.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.910 kcal (2) G-P(sol) polarization free energy of solvation -32.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds