Wall clock time and date at job start Tue Mar 31 2020 15:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.33496 * 126.72574 * 2 1 4 4 N 1.20650 * 113.39295 * 179.66267 * 3 2 1 5 5 C 1.30842 * 112.10138 * 0.50157 * 4 3 2 6 6 C 1.48376 * 127.44345 * 179.79267 * 5 4 3 7 7 C 1.39292 * 119.72476 * 334.66275 * 6 5 4 8 8 C 1.38463 * 119.06852 * 179.78972 * 7 6 5 9 9 C 1.38732 * 118.50150 * 0.47678 * 8 7 6 10 10 C 1.38321 * 119.35746 * 359.50124 * 9 8 7 11 11 N 1.31702 * 120.89403 * 0.27754 * 10 9 8 12 12 C 1.37203 * 126.72655 * 179.97438 * 2 1 3 13 13 C 1.47301 * 128.58099 * 0.04148 * 12 2 1 14 14 O 1.21622 * 120.00187 * 269.99730 * 13 12 2 15 15 N 1.34776 * 120.00016 * 89.99525 * 13 12 2 16 16 C 1.46505 * 119.99912 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.46995 * 178.28233 * 16 15 13 18 18 C 1.50695 * 115.55132 * 65.13914 * 17 16 15 19 19 H 1.07994 * 120.00432 * 265.40067 * 18 17 16 20 20 C 1.37881 * 119.99853 * 85.40926 * 18 17 16 21 21 N 1.31518 * 119.99926 * 353.55038 * 20 18 17 22 22 Si 1.86799 * 120.00071 * 173.55541 * 20 18 17 23 23 H 1.48504 * 109.47361 * 59.99686 * 22 20 18 24 24 H 1.48501 * 109.47305 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47213 * 299.99971 * 22 20 18 26 26 C 1.53000 * 117.49703 * 279.46996 * 17 16 15 27 27 C 1.53004 * 117.49885 * 210.81216 * 17 16 15 28 28 H 1.08993 * 109.46890 * 270.04191 * 1 2 3 29 29 H 1.09005 * 109.46725 * 30.04933 * 1 2 3 30 30 H 1.09000 * 109.46526 * 150.04123 * 1 2 3 31 31 H 1.08002 * 120.46876 * 0.04288 * 7 6 5 32 32 H 1.08000 * 120.74580 * 180.23013 * 8 7 6 33 33 H 1.08003 * 120.31911 * 179.77852 * 9 8 7 34 34 H 1.08000 * 119.55405 * 180.25719 * 10 9 8 35 35 H 0.97000 * 120.00533 * 0.02562 * 15 13 12 36 36 H 1.08999 * 109.47121 * 298.27443 * 16 15 13 37 37 H 1.08994 * 109.47078 * 58.27905 * 16 15 13 38 38 H 0.96994 * 119.99398 * 185.06749 * 21 20 18 39 39 H 1.09006 * 117.49859 * 0.02562 * 26 17 16 40 40 H 1.09003 * 117.50292 * 145.02079 * 26 17 16 41 41 H 1.08992 * 117.49782 * 214.97990 * 27 17 16 42 42 H 1.08997 * 117.49599 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3053 1.0700 0.0000 4 7 3.4793 0.7918 0.0065 5 6 3.6788 -0.5013 0.0014 6 6 4.9806 -1.2133 0.0024 7 6 6.1127 -0.5832 -0.5089 8 6 7.3215 -1.2584 -0.4973 9 6 7.3553 -2.5466 0.0167 10 6 6.1922 -3.1111 0.5086 11 7 5.0565 -2.4446 0.4896 12 6 2.3275 -1.0997 0.0005 13 6 1.9539 -2.5245 0.0003 14 8 1.7991 -3.1128 1.0535 15 7 1.7836 -3.1764 -1.1670 16 6 1.4114 -4.5934 -1.1672 17 6 1.2411 -5.0757 -2.6091 18 6 2.4928 -5.0712 -3.4482 19 1 2.7181 -4.2229 -4.0775 20 6 3.3506 -6.1501 -3.4126 21 7 3.1449 -7.1256 -2.5548 22 14 4.8047 -6.2263 -4.5826 23 1 5.6896 -5.0568 -4.3493 24 1 5.5669 -7.4784 -4.3442 25 1 4.3142 -6.2041 -5.9841 26 6 -0.0804 -4.7544 -3.3101 27 6 0.2222 -6.1878 -2.8664 28 1 -0.3633 0.0008 1.0276 29 1 -0.3633 0.8896 -0.5146 30 1 -0.3632 -0.8904 -0.5132 31 1 6.0495 0.4196 -0.9051 32 1 8.2170 -0.7943 -0.8834 33 1 8.2816 -3.1014 0.0368 34 1 6.2158 -4.1121 0.9133 35 1 1.9073 -2.7074 -2.0070 36 1 2.1941 -5.1746 -0.6798 37 1 0.4733 -4.7227 -0.6275 38 1 3.7877 -7.8480 -2.4786 39 1 -0.8283 -4.1989 -2.7441 40 1 -0.0445 -4.5400 -4.3782 41 1 0.4572 -6.9159 -3.6427 42 1 -0.3264 -6.5760 -2.0083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374024611.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:29 Heat of formation + Delta-G solvation = 64.408829 kcal Electronic energy + Delta-G solvation = -27701.804461 eV Core-core repulsion = 23843.222712 eV Total energy + Delta-G solvation = -3858.581749 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -46.03108 -41.13253 -40.52053 -38.45798 -35.48046 -34.96944 -34.58002 -33.96783 -33.55936 -31.82240 -29.29215 -28.20841 -27.32247 -25.95766 -24.85311 -24.26147 -22.95447 -21.96474 -21.35240 -20.94089 -19.08049 -18.95246 -18.36081 -17.92907 -17.39218 -17.00714 -16.79997 -16.69344 -16.41123 -16.06231 -15.58140 -15.14670 -14.99045 -14.86322 -14.37668 -14.35801 -14.08007 -14.02631 -13.60469 -13.58648 -13.47877 -12.95393 -12.85699 -12.83847 -12.45061 -12.42321 -12.03786 -11.88143 -11.54385 -11.23815 -10.96799 -10.87658 -10.55541 -10.48280 -10.44783 -10.09371 -9.93214 -9.87327 -8.10966 -6.23537 -0.45499 0.20097 0.25492 0.96847 1.38237 1.39990 1.42357 1.46415 1.76842 2.24030 2.39841 2.55563 2.74803 3.14530 3.16834 3.48199 3.65943 3.82110 3.84673 3.93916 3.98974 4.05620 4.18103 4.24751 4.35924 4.54220 4.55797 4.62445 4.65289 4.68235 4.70698 4.74258 5.00412 5.01952 5.03957 5.09519 5.10514 5.28423 5.52936 5.59542 5.60313 5.66679 5.76258 6.35494 6.64067 6.82583 6.84784 6.99650 7.24328 7.45378 8.96385 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.009366 B = 0.005490 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2988.868227 B = 5099.304728 C = 7128.890278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.036 3.964 3 O 0.119 5.881 4 N -0.344 5.344 5 C 0.081 3.919 6 C 0.153 3.847 7 C -0.142 4.142 8 C -0.069 4.069 9 C -0.149 4.149 10 C 0.085 3.915 11 N -0.494 5.494 12 C -0.250 4.250 13 C 0.606 3.394 14 O -0.573 6.573 15 N -0.684 5.684 16 C 0.184 3.816 17 C 0.003 3.997 18 C -0.506 4.506 19 H 0.056 0.944 20 C 0.030 3.970 21 N -0.903 5.903 22 Si 0.943 3.057 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.270 1.270 26 C -0.174 4.174 27 C -0.155 4.155 28 H 0.111 0.889 29 H 0.127 0.873 30 H 0.094 0.906 31 H 0.154 0.846 32 H 0.183 0.817 33 H 0.176 0.824 34 H 0.164 0.836 35 H 0.405 0.595 36 H 0.027 0.973 37 H 0.044 0.956 38 H 0.259 0.741 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.063 0.937 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.088 15.514 2.315 15.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.027 4.027 3 O 0.053 5.947 4 N -0.047 5.047 5 C -0.079 4.079 6 C 0.017 3.983 7 C -0.163 4.163 8 C -0.095 4.095 9 C -0.169 4.169 10 C -0.074 4.074 11 N -0.205 5.205 12 C -0.258 4.258 13 C 0.391 3.609 14 O -0.453 6.453 15 N -0.332 5.332 16 C 0.060 3.940 17 C 0.002 3.998 18 C -0.544 4.544 19 H 0.074 0.926 20 C -0.171 4.171 21 N -0.541 5.541 22 Si 0.769 3.231 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.195 1.195 26 C -0.211 4.211 27 C -0.194 4.194 28 H 0.129 0.871 29 H 0.146 0.854 30 H 0.112 0.888 31 H 0.172 0.828 32 H 0.201 0.799 33 H 0.194 0.806 34 H 0.181 0.819 35 H 0.240 0.760 36 H 0.046 0.954 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.112 0.888 40 H 0.103 0.897 41 H 0.081 0.919 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.040 15.541 3.395 16.038 hybrid contribution 1.478 -1.031 -0.978 2.050 sum 3.518 14.510 2.418 15.124 Atomic orbital electron populations 1.20765 0.79535 1.06861 1.06262 1.25166 0.97353 0.83328 0.96837 1.84459 1.10535 1.32839 1.66905 1.73823 0.96708 1.14527 1.19668 1.22699 0.92930 0.88939 1.03345 1.18497 0.90188 0.90793 0.98832 1.22269 0.92488 1.01995 0.99524 1.22042 0.98350 0.93946 0.95120 1.22690 1.00422 0.96536 0.97274 1.23111 0.87726 1.00009 0.96534 1.67440 1.30553 1.07348 1.15118 1.21897 0.92852 0.95362 1.15654 1.16859 0.76080 0.84321 0.83675 1.90736 1.53101 1.68747 1.32746 1.45751 1.68073 1.11687 1.07691 1.20610 0.96916 0.79295 0.97157 1.19015 0.89554 1.00072 0.91151 1.20563 1.06304 1.02429 1.25098 0.92587 1.25622 0.99905 0.95133 0.96469 1.70081 1.36216 1.11882 1.35877 0.85863 0.79954 0.77140 0.80167 1.20193 1.21213 1.19459 1.23026 0.99686 0.98127 1.00293 1.22424 1.03882 0.91501 1.01566 0.87094 0.85413 0.88776 0.82832 0.79940 0.80609 0.81862 0.76007 0.95428 0.93759 0.93161 0.88756 0.89699 0.91857 0.90856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.21 10.32 71.24 0.74 -0.48 16 2 C 0.04 0.94 7.53 25.44 0.19 1.13 16 3 O 0.12 3.09 11.05 76.97 0.85 3.94 16 4 N -0.34 -10.44 11.99 -45.02 -0.54 -10.98 16 5 C 0.08 2.81 7.20 44.52 0.32 3.13 16 6 C 0.15 5.38 6.75 41.98 0.28 5.66 16 7 C -0.14 -3.78 9.77 22.58 0.22 -3.56 16 8 C -0.07 -1.43 10.17 22.44 0.23 -1.21 16 9 C -0.15 -3.38 10.11 22.41 0.23 -3.16 16 10 C 0.08 2.67 11.18 84.73 0.95 3.62 16 11 N -0.49 -19.25 9.79 -184.84 -1.81 -21.06 16 12 C -0.25 -8.72 6.24 -18.61 -0.12 -8.84 16 13 C 0.61 25.16 7.09 86.63 0.61 25.77 16 14 O -0.57 -28.18 17.11 -4.10 -0.07 -28.25 16 15 N -0.68 -28.20 5.47 -466.48 -2.55 -30.75 16 16 C 0.18 8.59 5.50 86.38 0.48 9.06 16 17 C 0.00 0.13 1.38 -52.93 -0.07 0.06 16 18 C -0.51 -26.23 8.63 25.60 0.22 -26.01 16 19 H 0.06 2.85 7.82 -2.91 -0.02 2.83 16 20 C 0.03 1.60 5.39 84.65 0.46 2.05 16 21 N -0.90 -51.15 12.91 21.45 0.28 -50.87 16 22 Si 0.94 42.52 29.55 68.60 2.03 44.54 16 23 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 24 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 25 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 26 C -0.17 -6.75 9.96 30.62 0.30 -6.44 16 27 C -0.16 -6.97 9.42 30.62 0.29 -6.68 16 28 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.13 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.09 1.60 8.10 -2.39 -0.02 1.58 16 31 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 32 H 0.18 2.13 8.06 -2.91 -0.02 2.10 16 33 H 0.18 2.56 8.06 -2.91 -0.02 2.54 16 34 H 0.16 4.76 8.06 -2.91 -0.02 4.74 16 35 H 0.41 15.62 8.35 -92.71 -0.77 14.84 16 36 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.04 1.99 8.09 -2.39 -0.02 1.97 16 38 H 0.26 14.20 8.32 -92.71 -0.77 13.43 16 39 H 0.09 3.13 8.14 -2.38 -0.02 3.11 16 40 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 41 H 0.06 3.07 8.14 -2.39 -0.02 3.05 16 42 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 Total: -1.00 -73.93 375.71 3.79 -70.14 By element: Atomic # 1 Polarization: 28.89 SS G_CDS: 0.28 Total: 29.17 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: 5.32 Total: -5.88 kcal Atomic # 7 Polarization: -109.04 SS G_CDS: -4.62 Total: -113.66 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: 0.78 Total: -24.31 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal Total: -73.93 3.79 -70.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374024611.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.550 kcal (2) G-P(sol) polarization free energy of solvation -73.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds