Wall clock time and date at job start Tue Mar 31 2020 15:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34854 * 125.96129 * 2 1 4 4 N 1.36315 * 106.68794 * 179.97438 * 3 2 1 5 5 C 1.35424 * 107.39813 * 0.04038 * 4 3 2 6 6 N 1.30092 * 108.62600 * 359.67204 * 5 4 3 7 7 C 1.51035 * 123.98080 * 179.88031 * 5 4 3 8 8 H 1.09000 * 109.71879 * 103.73202 * 7 5 4 9 9 C 1.53005 * 109.71675 * 224.37285 * 7 5 4 10 10 N 1.46505 * 109.47013 * 293.75153 * 9 7 5 11 11 S 1.65597 * 119.99847 * 164.99780 * 10 9 7 12 12 O 1.42101 * 104.27730 * 181.07274 * 11 10 9 13 13 O 1.42102 * 104.27932 * 308.93111 * 11 10 9 14 14 C 1.81399 * 104.44950 * 65.00271 * 11 10 9 15 15 C 1.52996 * 109.47287 * 179.97438 * 14 11 10 16 16 C 1.50698 * 109.47360 * 179.97438 * 15 14 11 17 17 H 1.08002 * 119.99761 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99901 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00332 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99756 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47236 * 59.99840 * 20 18 16 22 22 H 1.48505 * 109.46908 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47142 * 299.99816 * 20 18 16 24 24 C 1.53405 * 108.21199 * 344.05002 * 7 5 4 25 25 C 1.53141 * 109.23289 * 48.82705 * 24 7 5 26 26 C 1.46469 * 127.77919 * 180.02562 * 4 3 2 27 27 H 1.09001 * 109.46953 * 90.00297 * 1 2 3 28 28 H 1.09000 * 109.47318 * 209.99895 * 1 2 3 29 29 H 1.09000 * 109.47161 * 330.00525 * 1 2 3 30 30 H 1.07999 * 126.66016 * 359.97438 * 3 2 1 31 31 H 1.08996 * 109.46951 * 53.75402 * 9 7 5 32 32 H 1.09003 * 109.47049 * 173.75534 * 9 7 5 33 33 H 0.97003 * 119.99813 * 345.00456 * 10 9 7 34 34 H 1.08998 * 109.46969 * 300.00168 * 14 11 10 35 35 H 1.09005 * 109.46940 * 59.99818 * 14 11 10 36 36 H 1.08998 * 109.47583 * 300.00196 * 15 14 11 37 37 H 1.09005 * 109.46949 * 60.00227 * 15 14 11 38 38 H 0.96999 * 120.00424 * 180.02562 * 19 18 16 39 39 H 1.09004 * 109.50734 * 288.90042 * 24 7 5 40 40 H 1.09000 * 109.54851 * 168.78205 * 24 7 5 41 41 H 1.09003 * 109.46378 * 170.50758 * 25 24 7 42 42 H 1.08999 * 109.47092 * 50.52933 * 25 24 7 43 43 H 1.09007 * 109.57981 * 282.66497 * 26 4 3 44 44 H 1.09001 * 109.58223 * 43.07525 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2990 1.0915 0.0000 4 7 3.5857 0.6416 0.0006 5 6 3.5414 -0.7119 0.0000 6 7 2.2957 -1.0869 0.0062 7 6 4.7655 -1.5966 -0.0022 8 1 4.9224 -2.0099 0.9941 9 6 4.5793 -2.7330 -1.0098 10 7 3.5001 -3.6146 -0.5576 11 16 2.8259 -4.7035 -1.6073 12 8 1.8183 -5.3503 -0.8420 13 8 2.4930 -3.9282 -2.7507 14 6 4.1728 -5.8566 -1.9903 15 6 3.6689 -6.9244 -2.9632 16 6 4.7880 -7.8820 -3.2819 17 1 5.7613 -7.7431 -2.8349 18 6 4.5694 -8.9354 -4.1442 19 7 3.3844 -9.1042 -4.6890 20 14 5.9565 -10.1228 -4.5387 21 1 6.4217 -10.7738 -3.2877 22 1 5.4677 -11.1584 -5.4841 23 1 7.0830 -9.3797 -5.1584 24 6 5.9742 -0.7417 -0.4041 25 6 5.9830 0.5429 0.4296 26 6 4.8149 1.4382 0.0013 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5137 30 1 1.9764 2.1222 -0.0004 31 1 4.3241 -2.3164 -1.9841 32 1 5.5049 -3.3032 -1.0895 33 1 3.1805 -3.5603 0.3567 34 1 4.9997 -5.3112 -2.4452 35 1 4.5143 -6.3344 -1.0720 36 1 2.8422 -7.4697 -2.5080 37 1 3.3272 -6.4469 -3.8816 38 1 3.2305 -9.8455 -5.2954 39 1 5.9055 -0.4886 -1.4621 40 1 6.8925 -1.3000 -0.2222 41 1 6.9228 1.0720 0.2716 42 1 5.8808 0.2916 1.4853 43 1 4.9995 1.8260 -1.0006 44 1 4.7131 2.2663 0.7028 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374437816.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:36 Heat of formation + Delta-G solvation = -32.066730 kcal Electronic energy + Delta-G solvation = -26132.005348 eV Core-core repulsion = 22404.684056 eV Total energy + Delta-G solvation = -3727.321292 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.46778 -37.56233 -36.35669 -35.60273 -35.16776 -33.81334 -32.67316 -31.52679 -31.07697 -29.43395 -27.12193 -25.57745 -25.51840 -22.71219 -22.47218 -21.54785 -20.34108 -19.41607 -18.56494 -17.29286 -17.04605 -16.48187 -16.15932 -15.86792 -15.33967 -15.00141 -14.65434 -14.58622 -14.52925 -14.32713 -13.97462 -13.44841 -13.32326 -13.05019 -12.80769 -12.52871 -12.42378 -12.34289 -11.95546 -11.77509 -11.66313 -11.55415 -11.36533 -11.32494 -11.23774 -11.02298 -10.93908 -10.88782 -10.34337 -10.29708 -9.87754 -9.68958 -9.56853 -9.33409 -8.85272 -8.45012 -8.25745 -6.06982 -4.12491 0.99773 1.93026 2.58921 3.07295 3.30086 3.34716 3.36039 3.37660 3.96864 4.11615 4.17332 4.22698 4.38527 4.52447 4.69426 4.72560 4.87219 4.92472 4.95727 5.02042 5.13960 5.20324 5.27816 5.28741 5.33505 5.40420 5.50181 5.61336 5.70751 5.72932 5.79505 5.83410 5.87455 6.03656 6.16305 6.23138 6.58703 6.75289 7.07160 7.38018 7.39883 7.46536 7.85720 8.13258 8.24026 8.90758 9.51720 11.04092 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.019797 B = 0.002996 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.993031 B = 9343.621965 C =10401.010412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.001 4.001 3 C -0.060 4.060 4 N -0.459 5.459 5 C 0.212 3.788 6 N -0.465 5.465 7 C -0.006 4.006 8 H 0.102 0.898 9 C 0.133 3.867 10 N -1.113 6.113 11 S 2.599 3.401 12 O -0.968 6.968 13 O -0.967 6.967 14 C -0.595 4.595 15 C 0.028 3.972 16 C -0.520 4.520 17 H 0.060 0.940 18 C 0.057 3.943 19 N -0.891 5.891 20 Si 0.900 3.100 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.276 1.276 24 C -0.124 4.124 25 C -0.133 4.133 26 C 0.103 3.897 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.171 0.829 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.416 0.584 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.033 0.967 37 H 0.033 0.967 38 H 0.265 0.735 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.798 24.424 12.445 28.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.130 4.130 3 C -0.193 4.193 4 N -0.142 5.142 5 C -0.050 4.050 6 N -0.183 5.183 7 C -0.028 4.028 8 H 0.120 0.880 9 C 0.006 3.994 10 N -0.870 5.870 11 S 2.695 3.305 12 O -0.958 6.958 13 O -0.957 6.957 14 C -0.728 4.728 15 C -0.011 4.011 16 C -0.560 4.560 17 H 0.079 0.921 18 C -0.145 4.145 19 N -0.529 5.529 20 Si 0.727 3.273 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 C -0.162 4.162 25 C -0.171 4.171 26 C -0.019 4.019 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.188 0.812 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.250 0.750 34 H 0.134 0.866 35 H 0.138 0.862 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.095 0.905 43 H 0.102 0.898 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.669 23.661 11.844 26.869 hybrid contribution 1.501 0.224 0.184 1.529 sum 6.170 23.885 12.028 27.445 Atomic orbital electron populations 1.20027 0.87820 1.02405 1.02328 1.20851 0.96553 0.88359 1.07252 1.22221 0.82900 1.00189 1.13942 1.45321 1.06325 1.07359 1.55217 1.23091 0.94781 0.81202 1.05972 1.70012 0.99508 1.29941 1.18880 1.20053 0.88295 0.93007 1.01428 0.88034 1.21114 0.90371 0.90328 0.97635 1.55509 1.51469 1.52476 1.27594 1.05349 0.76619 0.74827 0.73681 1.93539 1.55413 1.76560 1.70278 1.93525 1.82454 1.68153 1.51555 1.30509 1.17256 1.14548 1.10485 1.18943 0.97936 0.91656 0.92579 1.20984 0.96726 1.10625 1.27619 0.92129 1.25071 0.95886 0.97788 0.95775 1.69947 1.21524 1.30920 1.30482 0.86539 0.81975 0.80514 0.78270 1.20101 1.21107 1.20126 1.21743 0.97961 0.95596 1.00941 1.21882 0.97677 0.96338 1.01168 1.21969 0.82583 0.94316 1.03076 0.91374 0.91058 0.91683 0.81202 0.90316 0.90884 0.74965 0.86554 0.86218 0.94864 0.94890 0.92508 0.90443 0.89232 0.89048 0.90537 0.89815 0.89420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 10.42 36.01 0.38 -0.38 16 2 C 0.00 -0.01 7.10 -82.72 -0.59 -0.60 16 3 C -0.06 -0.64 11.55 -16.76 -0.19 -0.84 16 4 N -0.46 -4.61 3.13 -113.75 -0.36 -4.97 16 5 C 0.21 2.63 6.95 -155.24 -1.08 1.55 16 6 N -0.47 -7.16 10.16 -6.88 -0.07 -7.23 16 7 C -0.01 -0.06 2.60 -91.40 -0.24 -0.30 16 8 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 9 C 0.13 1.56 5.49 -4.04 -0.02 1.54 16 10 N -1.11 -16.28 5.02 -10.61 -0.05 -16.34 16 11 S 2.60 50.62 5.46 -107.50 -0.59 50.04 16 12 O -0.97 -21.92 18.08 -57.54 -1.04 -22.96 16 13 O -0.97 -21.90 17.50 -57.54 -1.01 -22.91 16 14 C -0.60 -11.79 6.01 37.16 0.22 -11.56 16 15 C 0.03 0.73 4.98 -27.89 -0.14 0.59 16 16 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 17 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 20 Si 0.90 21.43 29.54 -169.99 -5.02 16.40 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 24 C -0.12 -0.75 5.28 -26.45 -0.14 -0.89 16 25 C -0.13 -0.60 5.94 -26.51 -0.16 -0.76 16 26 C 0.10 0.59 6.98 -3.91 -0.03 0.56 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.17 1.24 8.06 -52.49 -0.42 0.82 16 31 H 0.08 1.05 7.69 -51.93 -0.40 0.65 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.42 5.71 8.38 -34.47 -0.29 5.42 16 34 H 0.12 2.02 8.14 -51.93 -0.42 1.60 16 35 H 0.12 2.13 8.14 -51.92 -0.42 1.70 16 36 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.08 0.50 8.09 -51.93 -0.42 0.08 16 40 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.08 0.36 8.12 -51.93 -0.42 -0.06 16 43 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 44 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 373.62 15.07 5.63 5.63 Total: -1.00 -39.46 373.62 -11.15 -50.61 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -6.99 Total: 2.43 kcal Atomic # 6 Polarization: -22.08 SS G_CDS: -2.40 Total: -24.47 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: 0.26 Total: -54.78 kcal Atomic # 8 Polarization: -43.82 SS G_CDS: -2.05 Total: -45.87 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 50.62 SS G_CDS: -0.59 Total: 50.04 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -39.46 -11.15 -50.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374437816.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.544 kcal (2) G-P(sol) polarization free energy of solvation -39.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds