Wall clock time and date at job start Tue Mar 31 2020 15:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34854 * 125.96129 * 2 1 4 4 N 1.36315 * 106.68794 * 179.97438 * 3 2 1 5 5 C 1.35424 * 107.39813 * 0.04038 * 4 3 2 6 6 N 1.30092 * 108.62600 * 359.67204 * 5 4 3 7 7 C 1.51035 * 123.98080 * 179.88031 * 5 4 3 8 8 H 1.09000 * 109.71879 * 103.73202 * 7 5 4 9 9 C 1.53005 * 109.71675 * 224.37285 * 7 5 4 10 10 N 1.46505 * 109.47013 * 293.75153 * 9 7 5 11 11 S 1.65597 * 119.99847 * 164.99780 * 10 9 7 12 12 O 1.42101 * 104.27730 * 181.07274 * 11 10 9 13 13 O 1.42102 * 104.27932 * 308.93111 * 11 10 9 14 14 C 1.81399 * 104.44950 * 65.00271 * 11 10 9 15 15 C 1.52996 * 109.47287 * 179.97438 * 14 11 10 16 16 C 1.50698 * 109.47360 * 179.97438 * 15 14 11 17 17 H 1.08002 * 119.99761 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99901 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00332 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99756 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47236 * 59.99840 * 20 18 16 22 22 H 1.48505 * 109.46908 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47142 * 299.99816 * 20 18 16 24 24 C 1.53405 * 108.21199 * 344.05002 * 7 5 4 25 25 C 1.53141 * 109.23289 * 48.82705 * 24 7 5 26 26 C 1.46469 * 127.77919 * 180.02562 * 4 3 2 27 27 H 1.09001 * 109.46953 * 90.00297 * 1 2 3 28 28 H 1.09000 * 109.47318 * 209.99895 * 1 2 3 29 29 H 1.09000 * 109.47161 * 330.00525 * 1 2 3 30 30 H 1.07999 * 126.66016 * 359.97438 * 3 2 1 31 31 H 1.08996 * 109.46951 * 53.75402 * 9 7 5 32 32 H 1.09003 * 109.47049 * 173.75534 * 9 7 5 33 33 H 0.97003 * 119.99813 * 345.00456 * 10 9 7 34 34 H 1.08998 * 109.46969 * 300.00168 * 14 11 10 35 35 H 1.09005 * 109.46940 * 59.99818 * 14 11 10 36 36 H 1.08998 * 109.47583 * 300.00196 * 15 14 11 37 37 H 1.09005 * 109.46949 * 60.00227 * 15 14 11 38 38 H 0.96999 * 120.00424 * 180.02562 * 19 18 16 39 39 H 1.09004 * 109.50734 * 288.90042 * 24 7 5 40 40 H 1.09000 * 109.54851 * 168.78205 * 24 7 5 41 41 H 1.09003 * 109.46378 * 170.50758 * 25 24 7 42 42 H 1.08999 * 109.47092 * 50.52933 * 25 24 7 43 43 H 1.09007 * 109.57981 * 282.66497 * 26 4 3 44 44 H 1.09001 * 109.58223 * 43.07525 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2990 1.0915 0.0000 4 7 3.5857 0.6416 0.0006 5 6 3.5414 -0.7119 0.0000 6 7 2.2957 -1.0869 0.0062 7 6 4.7655 -1.5966 -0.0022 8 1 4.9224 -2.0099 0.9941 9 6 4.5793 -2.7330 -1.0098 10 7 3.5001 -3.6146 -0.5576 11 16 2.8259 -4.7035 -1.6073 12 8 1.8183 -5.3503 -0.8420 13 8 2.4930 -3.9282 -2.7507 14 6 4.1728 -5.8566 -1.9903 15 6 3.6689 -6.9244 -2.9632 16 6 4.7880 -7.8820 -3.2819 17 1 5.7613 -7.7431 -2.8349 18 6 4.5694 -8.9354 -4.1442 19 7 3.3844 -9.1042 -4.6890 20 14 5.9565 -10.1228 -4.5387 21 1 6.4217 -10.7738 -3.2877 22 1 5.4677 -11.1584 -5.4841 23 1 7.0830 -9.3797 -5.1584 24 6 5.9742 -0.7417 -0.4041 25 6 5.9830 0.5429 0.4296 26 6 4.8149 1.4382 0.0013 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5137 30 1 1.9764 2.1222 -0.0004 31 1 4.3241 -2.3164 -1.9841 32 1 5.5049 -3.3032 -1.0895 33 1 3.1805 -3.5603 0.3567 34 1 4.9997 -5.3112 -2.4452 35 1 4.5143 -6.3344 -1.0720 36 1 2.8422 -7.4697 -2.5080 37 1 3.3272 -6.4469 -3.8816 38 1 3.2305 -9.8455 -5.2954 39 1 5.9055 -0.4886 -1.4621 40 1 6.8925 -1.3000 -0.2222 41 1 6.9228 1.0720 0.2716 42 1 5.8808 0.2916 1.4853 43 1 4.9995 1.8260 -1.0006 44 1 4.7131 2.2663 0.7028 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374437816.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:35 Heat of formation + Delta-G solvation = -61.362877 kcal Electronic energy + Delta-G solvation = -26133.275725 eV Core-core repulsion = 22404.684056 eV Total energy + Delta-G solvation = -3728.591668 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.24795 -38.32578 -37.99323 -36.93054 -36.43375 -35.87500 -33.53749 -33.10375 -32.32477 -30.20493 -27.82523 -27.56328 -26.40419 -23.64923 -23.36373 -23.06255 -21.18331 -20.35637 -19.83326 -18.99424 -18.20070 -17.76468 -17.30849 -17.01308 -16.80536 -16.50515 -15.94798 -15.83009 -15.27238 -15.16140 -14.99876 -14.58347 -14.45419 -14.10084 -13.95911 -13.70683 -13.65230 -13.32414 -13.24059 -13.11897 -13.05020 -12.97227 -12.87583 -12.76296 -12.42013 -12.20711 -12.13159 -12.03103 -11.82052 -11.79860 -11.69329 -11.14298 -10.77672 -10.62421 -10.37641 -10.18804 -9.09106 -8.23856 -6.38659 -0.60350 1.13653 1.42138 1.46478 1.54522 1.93711 1.98724 2.16914 2.40102 2.92770 3.09259 3.27661 3.38242 3.58263 3.70803 3.72503 4.02090 4.11640 4.14443 4.18984 4.27783 4.37420 4.40930 4.45903 4.57831 4.66170 4.68348 4.78945 4.84013 4.86631 4.95379 5.00042 5.10129 5.12975 5.19557 5.28510 5.29558 5.33703 5.45428 5.69853 5.92227 6.07243 6.24446 6.36492 6.75270 7.28289 7.31580 8.88557 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.019797 B = 0.002996 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.993031 B = 9343.621965 C =10401.010412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.048 4.048 3 C -0.048 4.048 4 N -0.455 5.455 5 C 0.195 3.805 6 N -0.520 5.520 7 C -0.004 4.004 8 H 0.116 0.884 9 C 0.121 3.879 10 N -1.096 6.096 11 S 2.616 3.384 12 O -1.007 7.007 13 O -1.005 7.005 14 C -0.584 4.584 15 C 0.019 3.981 16 C -0.539 4.539 17 H 0.080 0.920 18 C -0.007 4.007 19 N -0.937 5.937 20 Si 0.977 3.023 21 H -0.262 1.262 22 H -0.286 1.286 23 H -0.260 1.260 24 C -0.120 4.120 25 C -0.127 4.127 26 C 0.093 3.907 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.094 0.906 30 H 0.204 0.796 31 H 0.057 0.943 32 H 0.110 0.890 33 H 0.422 0.578 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.003 0.997 37 H 0.004 0.996 38 H 0.267 0.733 39 H 0.071 0.929 40 H 0.115 0.885 41 H 0.121 0.879 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.690 26.105 13.669 31.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.177 4.177 3 C -0.181 4.181 4 N -0.138 5.138 5 C -0.069 4.069 6 N -0.239 5.239 7 C -0.025 4.025 8 H 0.134 0.866 9 C -0.006 4.006 10 N -0.857 5.857 11 S 2.713 3.287 12 O -0.997 6.997 13 O -0.995 6.995 14 C -0.716 4.716 15 C -0.020 4.020 16 C -0.578 4.578 17 H 0.098 0.902 18 C -0.205 4.205 19 N -0.577 5.577 20 Si 0.801 3.199 21 H -0.187 1.187 22 H -0.212 1.212 23 H -0.185 1.185 24 C -0.159 4.159 25 C -0.164 4.164 26 C -0.028 4.028 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.112 0.888 30 H 0.220 0.780 31 H 0.076 0.924 32 H 0.128 0.872 33 H 0.258 0.742 34 H 0.165 0.835 35 H 0.164 0.836 36 H 0.021 0.979 37 H 0.022 0.978 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.133 0.867 41 H 0.139 0.861 42 H 0.095 0.905 43 H 0.112 0.888 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.583 25.371 13.081 29.807 hybrid contribution 0.272 -0.187 -0.175 0.373 sum 8.855 25.184 12.905 29.651 Atomic orbital electron populations 1.20031 0.87388 1.02908 1.01926 1.21305 0.97539 0.89211 1.09654 1.22689 0.82948 1.00895 1.11607 1.45610 1.07410 1.07039 1.53736 1.23601 0.94799 0.82714 1.05751 1.69921 1.01373 1.31843 1.20773 1.20220 0.88642 0.92262 1.01395 0.86592 1.21507 0.90358 0.91241 0.97486 1.55019 1.52216 1.51576 1.26917 1.04481 0.76254 0.74763 0.73160 1.93475 1.57543 1.77723 1.70945 1.93474 1.83267 1.69067 1.53650 1.30328 1.17961 1.13109 1.10230 1.18825 0.97211 0.93123 0.92823 1.21512 0.97740 1.10913 1.27602 0.90152 1.26185 0.98718 1.00043 0.95554 1.70115 1.24215 1.31900 1.31430 0.85317 0.78443 0.77744 0.78443 1.18651 1.21161 1.18482 1.21797 0.97076 0.96136 1.00885 1.21909 0.98328 0.95463 1.00721 1.22384 0.81218 0.94740 1.04455 0.92199 0.92944 0.88761 0.77956 0.92408 0.87174 0.74166 0.83487 0.83557 0.97913 0.97790 0.92430 0.90983 0.86693 0.86056 0.90482 0.88815 0.87237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.51 10.42 71.24 0.74 -0.77 16 2 C -0.05 -1.33 7.10 41.41 0.29 -1.04 16 3 C -0.05 -0.96 11.55 83.22 0.96 0.00 16 4 N -0.46 -8.32 3.13 -513.78 -1.61 -9.93 16 5 C 0.19 4.66 6.95 138.23 0.96 5.62 16 6 N -0.52 -16.43 10.16 -175.69 -1.79 -18.21 16 7 C 0.00 -0.06 2.60 -11.30 -0.03 -0.09 16 8 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 9 C 0.12 2.64 5.49 86.38 0.47 3.12 16 10 N -1.10 -31.78 5.02 -187.47 -0.94 -32.72 16 11 S 2.62 104.78 5.46 -56.49 -0.31 104.47 16 12 O -1.01 -47.64 18.08 -127.65 -2.31 -49.95 16 13 O -1.00 -47.58 17.50 -127.65 -2.23 -49.81 16 14 C -0.58 -22.78 6.01 71.98 0.43 -22.35 16 15 C 0.02 1.03 4.98 29.85 0.15 1.18 16 16 C -0.54 -30.24 9.11 25.60 0.23 -30.01 16 17 H 0.08 4.08 7.74 -2.91 -0.02 4.05 16 18 C -0.01 -0.40 5.46 84.65 0.46 0.07 16 19 N -0.94 -58.32 13.29 21.45 0.28 -58.04 16 20 Si 0.98 43.51 29.54 68.60 2.03 45.54 16 21 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 22 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 24 C -0.12 -1.02 5.28 30.78 0.16 -0.86 16 25 C -0.13 -0.62 5.94 30.74 0.18 -0.43 16 26 C 0.09 0.74 6.98 86.48 0.60 1.35 16 27 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.20 2.44 8.06 -2.91 -0.02 2.42 16 31 H 0.06 1.52 7.69 -2.39 -0.02 1.51 16 32 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.42 11.59 8.38 -96.74 -0.81 10.78 16 34 H 0.15 4.79 8.14 -2.39 -0.02 4.77 16 35 H 0.15 4.92 8.14 -2.39 -0.02 4.90 16 36 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 37 H 0.00 0.22 8.14 -2.38 -0.02 0.20 16 38 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 39 H 0.07 0.72 8.09 -2.39 -0.02 0.70 16 40 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.12 -0.06 8.14 -2.39 -0.02 -0.08 16 42 H 0.08 0.42 8.12 -2.39 -0.02 0.40 16 43 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 44 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 Total: -1.00 -90.85 373.62 -1.06 -91.91 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 0.18 Total: 20.94 kcal Atomic # 6 Polarization: -49.84 SS G_CDS: 5.63 Total: -44.21 kcal Atomic # 7 Polarization: -114.84 SS G_CDS: -4.05 Total: -118.90 kcal Atomic # 8 Polarization: -95.22 SS G_CDS: -4.54 Total: -99.76 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: 104.78 SS G_CDS: -0.31 Total: 104.47 kcal Total: -90.85 -1.06 -91.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374437816.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.551 kcal (2) G-P(sol) polarization free energy of solvation -90.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds