Wall clock time and date at job start Tue Mar 31 2020 15:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34860 * 125.96439 * 2 1 4 4 N 1.36308 * 106.68821 * 180.02562 * 3 2 1 5 5 C 1.35422 * 107.40113 * 359.95781 * 4 3 2 6 6 N 1.30085 * 108.62698 * 0.05382 * 5 4 3 7 7 C 1.51045 * 123.98048 * 180.02562 * 5 4 3 8 8 H 1.08994 * 109.71486 * 256.23613 * 7 5 4 9 9 C 1.53011 * 109.71075 * 135.63916 * 7 5 4 10 10 N 1.46503 * 109.46624 * 65.00157 * 9 7 5 11 11 S 1.65601 * 119.99369 * 164.99794 * 10 9 7 12 12 O 1.42096 * 104.27862 * 308.93002 * 11 10 9 13 13 O 1.42105 * 104.27565 * 181.06659 * 11 10 9 14 14 C 1.81399 * 104.44935 * 65.00016 * 11 10 9 15 15 C 1.53002 * 109.47165 * 179.97438 * 14 11 10 16 16 C 1.50706 * 109.46931 * 179.97438 * 15 14 11 17 17 H 1.07999 * 120.00193 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99398 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99350 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00608 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47326 * 270.00340 * 20 18 16 22 22 H 1.48506 * 109.46545 * 30.00090 * 20 18 16 23 23 H 1.48498 * 109.47210 * 149.99801 * 20 18 16 24 24 C 1.53401 * 108.21187 * 15.96585 * 7 5 4 25 25 C 1.53144 * 109.24110 * 311.18071 * 24 7 5 26 26 C 1.46480 * 127.77743 * 179.91303 * 4 3 2 27 27 H 1.09000 * 109.47354 * 90.00050 * 1 2 3 28 28 H 1.08997 * 109.46880 * 210.00396 * 1 2 3 29 29 H 1.09000 * 109.47047 * 329.99725 * 1 2 3 30 30 H 1.08003 * 126.65390 * 359.97438 * 3 2 1 31 31 H 1.08993 * 109.46936 * 305.00034 * 9 7 5 32 32 H 1.09003 * 109.46738 * 184.99904 * 9 7 5 33 33 H 0.96993 * 120.00516 * 344.99742 * 10 9 7 34 34 H 1.09004 * 109.47568 * 59.99655 * 14 11 10 35 35 H 1.08996 * 109.47243 * 299.99928 * 14 11 10 36 36 H 1.09000 * 109.46986 * 60.00120 * 15 14 11 37 37 H 1.08993 * 109.47662 * 299.99897 * 15 14 11 38 38 H 0.97005 * 119.99661 * 179.97438 * 19 18 16 39 39 H 1.08994 * 109.51213 * 71.11103 * 24 7 5 40 40 H 1.09006 * 109.50514 * 191.25204 * 24 7 5 41 41 H 1.08991 * 109.46815 * 309.46844 * 25 24 7 42 42 H 1.09008 * 109.46278 * 189.48587 * 25 24 7 43 43 H 1.08999 * 109.58002 * 316.99510 * 26 4 3 44 44 H 1.09001 * 109.58377 * 77.40275 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2990 1.0915 0.0000 4 7 3.5856 0.6416 -0.0006 5 6 3.5413 -0.7119 0.0000 6 7 2.2957 -1.0869 -0.0002 7 6 4.7656 -1.5967 0.0002 8 1 4.9204 -2.0104 -0.9962 9 6 4.5807 -2.7332 1.0079 10 7 3.4811 -3.5978 0.5724 11 16 3.2898 -5.0975 1.2481 12 8 4.5723 -5.6989 1.1354 13 8 2.1630 -5.6435 0.5761 14 6 2.8939 -4.7636 2.9866 15 6 2.6910 -6.0872 3.7268 16 6 2.3627 -5.8097 5.1712 17 1 2.3042 -4.7913 5.5257 18 6 2.1371 -6.8562 6.0401 19 7 1.8501 -6.6141 7.3005 20 14 2.2390 -8.6179 5.4272 21 1 0.9026 -9.0534 4.9483 22 1 3.2151 -8.6978 4.3109 23 1 2.6804 -9.5027 6.5351 24 6 5.9748 -0.7419 0.4005 25 6 5.9824 0.5431 -0.4327 26 6 4.8149 1.4382 -0.0026 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.9763 2.1222 -0.0004 31 1 4.3487 -2.3159 1.9877 32 1 5.4993 -3.3168 1.0697 33 1 2.8652 -3.2919 -0.1116 34 1 1.9803 -4.1718 3.0441 35 1 3.7137 -4.2118 3.4464 36 1 3.6044 -6.6793 3.6694 37 1 1.8710 -6.6387 3.2670 38 1 1.6910 -7.3503 7.9118 39 1 5.9078 -0.4892 1.4586 40 1 6.8925 -1.3006 0.2163 41 1 5.8786 0.2923 -1.4882 42 1 6.9225 1.0721 -0.2758 43 1 4.7124 2.2663 -0.7039 44 1 5.0005 1.8260 0.9990 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374437817.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:41 Heat of formation + Delta-G solvation = -27.932593 kcal Electronic energy + Delta-G solvation = -26223.647039 eV Core-core repulsion = 22496.505017 eV Total energy + Delta-G solvation = -3727.142022 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.56386 -37.60724 -36.54116 -35.70979 -35.38055 -33.85741 -32.71350 -31.58781 -31.39643 -29.53594 -27.17722 -25.86891 -25.63400 -22.76945 -22.52872 -21.18556 -20.45226 -19.37914 -18.74370 -17.45280 -17.12092 -16.79990 -16.30542 -15.99294 -15.45501 -15.11783 -14.76900 -14.58502 -14.43603 -14.23415 -14.02999 -13.71841 -13.41475 -13.03786 -12.90335 -12.72979 -12.50915 -12.39886 -12.04180 -11.86729 -11.80254 -11.59704 -11.57292 -11.47373 -11.34646 -11.17042 -11.07734 -11.05837 -10.36350 -10.10167 -9.97987 -9.67899 -9.66990 -9.39033 -8.98320 -8.60305 -8.34094 -6.10777 -4.11248 0.85987 1.85381 2.52064 2.95687 3.20394 3.31747 3.38502 3.43563 3.90367 4.06618 4.14175 4.18888 4.31362 4.41610 4.61768 4.67408 4.80471 4.83654 4.90093 4.96895 5.08945 5.17249 5.21545 5.24036 5.28238 5.39721 5.45724 5.58127 5.64100 5.64896 5.68359 5.76282 5.81088 5.97735 6.08922 6.14991 6.40307 6.65953 6.91630 6.97143 7.03175 7.43395 7.62028 8.01272 8.43495 8.90951 9.49347 11.01754 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.015827 B = 0.003254 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.681624 B = 8603.637459 C = 8984.246150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.002 3.998 3 C -0.058 4.058 4 N -0.456 5.456 5 C 0.213 3.787 6 N -0.476 5.476 7 C -0.008 4.008 8 H 0.103 0.897 9 C 0.133 3.867 10 N -1.116 6.116 11 S 2.593 3.407 12 O -0.972 6.972 13 O -0.967 6.967 14 C -0.584 4.584 15 C -0.007 4.007 16 C -0.517 4.517 17 H 0.077 0.923 18 C 0.071 3.929 19 N -0.898 5.898 20 Si 0.870 3.130 21 H -0.271 1.271 22 H -0.261 1.261 23 H -0.283 1.283 24 C -0.124 4.124 25 C -0.133 4.133 26 C 0.103 3.897 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.172 0.828 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.424 0.576 34 H 0.126 0.874 35 H 0.121 0.879 36 H 0.032 0.968 37 H 0.028 0.972 38 H 0.265 0.735 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.721 20.566 -17.377 28.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.127 4.127 3 C -0.191 4.191 4 N -0.140 5.140 5 C -0.050 4.050 6 N -0.195 5.195 7 C -0.029 4.029 8 H 0.121 0.879 9 C 0.005 3.995 10 N -0.877 5.877 11 S 2.690 3.310 12 O -0.962 6.962 13 O -0.957 6.957 14 C -0.717 4.717 15 C -0.047 4.047 16 C -0.556 4.556 17 H 0.095 0.905 18 C -0.132 4.132 19 N -0.536 5.536 20 Si 0.696 3.304 21 H -0.197 1.197 22 H -0.186 1.186 23 H -0.208 1.208 24 C -0.162 4.162 25 C -0.171 4.171 26 C -0.020 4.020 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.189 0.811 31 H 0.083 0.917 32 H 0.107 0.893 33 H 0.262 0.738 34 H 0.145 0.855 35 H 0.140 0.860 36 H 0.050 0.950 37 H 0.046 0.954 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.109 0.891 41 H 0.095 0.905 42 H 0.110 0.890 43 H 0.107 0.893 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.741 18.914 -17.570 26.951 hybrid contribution -0.186 0.836 0.157 0.871 sum 7.555 19.751 -17.412 27.393 Atomic orbital electron populations 1.20035 0.87656 1.02876 1.02067 1.20821 0.96514 0.88212 1.07185 1.22259 0.82829 1.00301 1.13669 1.45306 1.06426 1.07336 1.54907 1.23137 0.94722 0.81375 1.05746 1.69815 0.99566 1.30290 1.19821 1.20068 0.88292 0.92832 1.01715 0.87859 1.21135 0.90657 0.91032 0.96706 1.55619 1.40374 1.36201 1.55514 1.05407 0.74332 0.73028 0.78211 1.93528 1.41416 1.74679 1.86574 1.93554 1.53218 1.76309 1.72660 1.30291 1.11313 1.09784 1.20289 1.19405 0.97783 0.89455 0.98022 1.20873 1.48598 0.95426 0.90677 0.90493 1.24990 0.94232 0.99214 0.94744 1.69890 1.47651 1.32306 1.03728 0.86917 0.79489 0.84853 0.79154 1.19680 1.18569 1.20834 1.21744 0.97999 0.95546 1.00947 1.21889 0.97720 0.96317 1.01191 1.21992 0.82477 0.94312 1.03193 0.91572 0.90803 0.91529 0.81106 0.91659 0.89325 0.73843 0.85522 0.86016 0.94987 0.95387 0.92469 0.90368 0.89141 0.90520 0.88957 0.89344 0.89673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.42 36.00 0.38 -0.30 16 2 C 0.00 0.02 7.10 -82.72 -0.59 -0.57 16 3 C -0.06 -0.57 11.55 -16.76 -0.19 -0.76 16 4 N -0.46 -4.22 3.13 -113.75 -0.36 -4.58 16 5 C 0.21 2.43 6.90 -155.24 -1.07 1.36 16 6 N -0.48 -6.57 9.32 -6.88 -0.06 -6.64 16 7 C -0.01 -0.07 2.70 -91.39 -0.25 -0.32 16 8 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 9 C 0.13 1.53 5.51 -4.03 -0.02 1.50 16 10 N -1.12 -16.14 5.57 -10.61 -0.06 -16.20 16 11 S 2.59 47.46 5.46 -107.50 -0.59 46.87 16 12 O -0.97 -19.68 17.50 -57.54 -1.01 -20.69 16 13 O -0.97 -20.60 18.08 -57.54 -1.04 -21.64 16 14 C -0.58 -11.45 6.01 37.16 0.22 -11.23 16 15 C -0.01 -0.18 4.05 -27.88 -0.11 -0.30 16 16 C -0.52 -14.86 9.66 -34.44 -0.33 -15.19 16 17 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 18 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 19 N -0.90 -27.63 13.96 55.43 0.77 -26.85 16 20 Si 0.87 21.99 27.47 -169.99 -4.67 17.32 16 21 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 23 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 24 C -0.12 -0.73 5.28 -26.45 -0.14 -0.87 16 25 C -0.13 -0.57 5.94 -26.52 -0.16 -0.73 16 26 C 0.10 0.54 6.98 -3.91 -0.03 0.51 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.17 1.13 8.06 -52.48 -0.42 0.70 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 0.93 7.69 -51.93 -0.40 0.53 16 33 H 0.42 6.16 6.91 -34.47 -0.24 5.93 16 34 H 0.13 2.37 8.14 -51.92 -0.42 1.95 16 35 H 0.12 2.14 8.14 -51.93 -0.42 1.72 16 36 H 0.03 0.78 7.20 -51.93 -0.37 0.41 16 37 H 0.03 0.69 7.57 -51.93 -0.39 0.29 16 38 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 39 H 0.08 0.47 8.08 -51.93 -0.42 0.05 16 40 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.35 8.12 -51.93 -0.42 -0.07 16 42 H 0.09 0.20 8.14 -51.92 -0.42 -0.22 16 43 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 368.31 15.07 5.55 5.55 Total: -1.00 -38.15 368.31 -10.75 -48.91 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -6.91 Total: 2.85 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: -2.39 Total: -24.90 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: 0.29 Total: -54.27 kcal Atomic # 8 Polarization: -40.28 SS G_CDS: -2.05 Total: -42.33 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Atomic # 16 Polarization: 47.46 SS G_CDS: -0.59 Total: 46.87 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -38.15 -10.75 -48.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374437817.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.975 kcal (2) G-P(sol) polarization free energy of solvation -38.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds