Wall clock time and date at job start Tue Mar 31 2020 15:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34860 * 125.96439 * 2 1 4 4 N 1.36308 * 106.68821 * 180.02562 * 3 2 1 5 5 C 1.35422 * 107.40113 * 359.95781 * 4 3 2 6 6 N 1.30085 * 108.62698 * 0.05382 * 5 4 3 7 7 C 1.51045 * 123.98048 * 180.02562 * 5 4 3 8 8 H 1.08994 * 109.71486 * 256.23613 * 7 5 4 9 9 C 1.53011 * 109.71075 * 135.63916 * 7 5 4 10 10 N 1.46503 * 109.46624 * 65.00157 * 9 7 5 11 11 S 1.65601 * 119.99369 * 164.99794 * 10 9 7 12 12 O 1.42096 * 104.27862 * 308.93002 * 11 10 9 13 13 O 1.42105 * 104.27565 * 181.06659 * 11 10 9 14 14 C 1.81399 * 104.44935 * 65.00016 * 11 10 9 15 15 C 1.53002 * 109.47165 * 179.97438 * 14 11 10 16 16 C 1.50706 * 109.46931 * 179.97438 * 15 14 11 17 17 H 1.07999 * 120.00193 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99398 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99350 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00608 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47326 * 270.00340 * 20 18 16 22 22 H 1.48506 * 109.46545 * 30.00090 * 20 18 16 23 23 H 1.48498 * 109.47210 * 149.99801 * 20 18 16 24 24 C 1.53401 * 108.21187 * 15.96585 * 7 5 4 25 25 C 1.53144 * 109.24110 * 311.18071 * 24 7 5 26 26 C 1.46480 * 127.77743 * 179.91303 * 4 3 2 27 27 H 1.09000 * 109.47354 * 90.00050 * 1 2 3 28 28 H 1.08997 * 109.46880 * 210.00396 * 1 2 3 29 29 H 1.09000 * 109.47047 * 329.99725 * 1 2 3 30 30 H 1.08003 * 126.65390 * 359.97438 * 3 2 1 31 31 H 1.08993 * 109.46936 * 305.00034 * 9 7 5 32 32 H 1.09003 * 109.46738 * 184.99904 * 9 7 5 33 33 H 0.96993 * 120.00516 * 344.99742 * 10 9 7 34 34 H 1.09004 * 109.47568 * 59.99655 * 14 11 10 35 35 H 1.08996 * 109.47243 * 299.99928 * 14 11 10 36 36 H 1.09000 * 109.46986 * 60.00120 * 15 14 11 37 37 H 1.08993 * 109.47662 * 299.99897 * 15 14 11 38 38 H 0.97005 * 119.99661 * 179.97438 * 19 18 16 39 39 H 1.08994 * 109.51213 * 71.11103 * 24 7 5 40 40 H 1.09006 * 109.50514 * 191.25204 * 24 7 5 41 41 H 1.08991 * 109.46815 * 309.46844 * 25 24 7 42 42 H 1.09008 * 109.46278 * 189.48587 * 25 24 7 43 43 H 1.08999 * 109.58002 * 316.99510 * 26 4 3 44 44 H 1.09001 * 109.58377 * 77.40275 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2990 1.0915 0.0000 4 7 3.5856 0.6416 -0.0006 5 6 3.5413 -0.7119 0.0000 6 7 2.2957 -1.0869 -0.0002 7 6 4.7656 -1.5967 0.0002 8 1 4.9204 -2.0104 -0.9962 9 6 4.5807 -2.7332 1.0079 10 7 3.4811 -3.5978 0.5724 11 16 3.2898 -5.0975 1.2481 12 8 4.5723 -5.6989 1.1354 13 8 2.1630 -5.6435 0.5761 14 6 2.8939 -4.7636 2.9866 15 6 2.6910 -6.0872 3.7268 16 6 2.3627 -5.8097 5.1712 17 1 2.3042 -4.7913 5.5257 18 6 2.1371 -6.8562 6.0401 19 7 1.8501 -6.6141 7.3005 20 14 2.2390 -8.6179 5.4272 21 1 0.9026 -9.0534 4.9483 22 1 3.2151 -8.6978 4.3109 23 1 2.6804 -9.5027 6.5351 24 6 5.9748 -0.7419 0.4005 25 6 5.9824 0.5431 -0.4327 26 6 4.8149 1.4382 -0.0026 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.9763 2.1222 -0.0004 31 1 4.3487 -2.3159 1.9877 32 1 5.4993 -3.3168 1.0697 33 1 2.8652 -3.2919 -0.1116 34 1 1.9803 -4.1718 3.0441 35 1 3.7137 -4.2118 3.4464 36 1 3.6044 -6.6793 3.6694 37 1 1.8710 -6.6387 3.2670 38 1 1.6910 -7.3503 7.9118 39 1 5.9078 -0.4892 1.4586 40 1 6.8925 -1.3006 0.2163 41 1 5.8786 0.2923 -1.4882 42 1 6.9225 1.0721 -0.2758 43 1 4.7124 2.2663 -0.7039 44 1 5.0005 1.8260 0.9990 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374437817.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:40 Heat of formation + Delta-G solvation = -55.584084 kcal Electronic energy + Delta-G solvation = -26224.846098 eV Core-core repulsion = 22496.505017 eV Total energy + Delta-G solvation = -3728.341081 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.27880 -38.36225 -38.03234 -37.01483 -36.49702 -35.89425 -33.53484 -33.46944 -32.31423 -30.25567 -27.89181 -27.80124 -26.42012 -23.51969 -23.13922 -23.08185 -21.22475 -20.26457 -19.93337 -19.33533 -18.35699 -17.79862 -17.43272 -17.00193 -16.81854 -16.37545 -16.11539 -15.79256 -15.24624 -15.18483 -15.13232 -14.81589 -14.59627 -14.26158 -13.81150 -13.79252 -13.66970 -13.32606 -13.25422 -13.19519 -13.08541 -13.05551 -13.00405 -12.93144 -12.46644 -12.22719 -12.06796 -11.95673 -11.83791 -11.82337 -11.70546 -11.30801 -10.84446 -10.78519 -10.39738 -10.28690 -9.09542 -8.36638 -6.42470 -0.65237 1.12890 1.32946 1.33752 1.44972 1.84990 1.94180 2.13706 2.30124 2.78260 2.97152 3.24440 3.27776 3.57112 3.69077 3.70009 3.91431 4.06535 4.10803 4.13336 4.25755 4.35660 4.40006 4.47155 4.53554 4.56519 4.65689 4.67448 4.84409 4.89968 4.96874 4.98331 5.06484 5.06635 5.12064 5.14845 5.20610 5.30883 5.44350 5.47152 5.89369 6.16876 6.20523 6.36847 6.62780 7.21705 7.23437 8.79119 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.015827 B = 0.003254 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.681624 B = 8603.637459 C = 8984.246150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.039 4.039 3 C -0.048 4.048 4 N -0.453 5.453 5 C 0.196 3.804 6 N -0.520 5.520 7 C -0.004 4.004 8 H 0.107 0.893 9 C 0.119 3.881 10 N -1.104 6.104 11 S 2.625 3.375 12 O -0.987 6.987 13 O -0.997 6.997 14 C -0.589 4.589 15 C -0.016 4.016 16 C -0.528 4.528 17 H 0.046 0.954 18 C 0.013 3.987 19 N -0.940 5.940 20 Si 0.927 3.073 21 H -0.262 1.262 22 H -0.248 1.248 23 H -0.271 1.271 24 C -0.121 4.121 25 C -0.127 4.127 26 C 0.093 3.907 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.086 0.914 30 H 0.203 0.797 31 H 0.067 0.933 32 H 0.102 0.898 33 H 0.426 0.574 34 H 0.130 0.870 35 H 0.139 0.861 36 H 0.037 0.963 37 H 0.029 0.971 38 H 0.270 0.730 39 H 0.077 0.923 40 H 0.108 0.892 41 H 0.074 0.926 42 H 0.121 0.879 43 H 0.109 0.891 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.563 21.854 -18.926 30.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.168 4.168 3 C -0.182 4.182 4 N -0.136 5.136 5 C -0.067 4.067 6 N -0.240 5.240 7 C -0.026 4.026 8 H 0.125 0.875 9 C -0.007 4.007 10 N -0.867 5.867 11 S 2.720 3.280 12 O -0.977 6.977 13 O -0.988 6.988 14 C -0.720 4.720 15 C -0.055 4.055 16 C -0.567 4.567 17 H 0.064 0.936 18 C -0.185 4.185 19 N -0.580 5.580 20 Si 0.749 3.251 21 H -0.187 1.187 22 H -0.171 1.171 23 H -0.196 1.196 24 C -0.160 4.160 25 C -0.165 4.165 26 C -0.027 4.027 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.105 0.895 30 H 0.219 0.781 31 H 0.085 0.915 32 H 0.120 0.880 33 H 0.264 0.736 34 H 0.148 0.852 35 H 0.157 0.843 36 H 0.055 0.945 37 H 0.047 0.953 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.127 0.873 41 H 0.093 0.907 42 H 0.139 0.861 43 H 0.128 0.872 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.601 20.221 -19.110 29.432 hybrid contribution -0.748 0.605 0.643 1.158 sum 8.853 20.826 -18.467 29.208 Atomic orbital electron populations 1.20036 0.87102 1.02733 1.02405 1.21253 0.97460 0.88897 1.09186 1.22722 0.82814 1.01060 1.11566 1.45571 1.07480 1.06986 1.53528 1.23452 0.94612 0.82712 1.05972 1.69725 1.01059 1.31913 1.21305 1.20147 0.89053 0.92247 1.01161 0.87506 1.21486 0.89891 0.91663 0.97698 1.55307 1.41254 1.35443 1.54694 1.04289 0.73227 0.73485 0.76981 1.93504 1.41930 1.75744 1.86491 1.93506 1.54517 1.77797 1.72954 1.30289 1.12373 1.07586 1.21765 1.19373 0.97831 0.92179 0.96125 1.21163 1.48301 0.94200 0.93024 0.93594 1.25891 0.93906 1.03873 0.94850 1.70015 1.48992 1.33905 1.05088 0.85992 0.80251 0.79464 0.79346 1.18692 1.17129 1.19622 1.21794 0.96900 0.96072 1.01209 1.21908 0.98555 0.95437 1.00595 1.22370 0.81111 0.94628 1.04598 0.90998 0.93014 0.89534 0.78061 0.91500 0.88034 0.73564 0.85215 0.84298 0.94518 0.95309 0.92084 0.90429 0.87347 0.90706 0.86088 0.87237 0.88540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.30 10.42 71.24 0.74 -0.56 16 2 C -0.04 -0.95 7.10 41.41 0.29 -0.65 16 3 C -0.05 -0.85 11.55 83.22 0.96 0.11 16 4 N -0.45 -7.46 3.13 -513.78 -1.61 -9.07 16 5 C 0.20 4.26 6.90 138.24 0.95 5.22 16 6 N -0.52 -14.41 9.32 -175.68 -1.64 -16.05 16 7 C 0.00 -0.07 2.70 -11.29 -0.03 -0.10 16 8 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 9 C 0.12 2.60 5.51 86.38 0.48 3.08 16 10 N -1.10 -31.33 5.57 -187.47 -1.04 -32.37 16 11 S 2.62 94.70 5.46 -56.49 -0.31 94.39 16 12 O -0.99 -38.78 17.50 -127.65 -2.23 -41.01 16 13 O -1.00 -42.39 18.08 -127.65 -2.31 -44.70 16 14 C -0.59 -23.10 6.01 71.98 0.43 -22.67 16 15 C -0.02 -0.79 4.05 29.85 0.12 -0.67 16 16 C -0.53 -30.97 9.66 25.60 0.25 -30.72 16 17 H 0.05 2.89 7.99 -2.91 -0.02 2.86 16 18 C 0.01 0.79 5.47 84.66 0.46 1.25 16 19 N -0.94 -58.99 13.96 21.45 0.30 -58.69 16 20 Si 0.93 44.96 27.47 68.60 1.88 46.85 16 21 H -0.26 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.25 -11.38 6.54 99.48 0.65 -10.73 16 23 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 24 C -0.12 -1.08 5.28 30.78 0.16 -0.92 16 25 C -0.13 -0.63 5.94 30.73 0.18 -0.45 16 26 C 0.09 0.67 6.98 86.47 0.60 1.27 16 27 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.20 2.08 8.06 -2.91 -0.02 2.06 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.10 1.95 7.69 -2.39 -0.02 1.93 16 33 H 0.43 12.39 6.91 -96.75 -0.67 11.72 16 34 H 0.13 4.95 8.14 -2.39 -0.02 4.93 16 35 H 0.14 4.86 8.14 -2.39 -0.02 4.84 16 36 H 0.04 1.76 7.20 -2.39 -0.02 1.75 16 37 H 0.03 1.40 7.57 -2.39 -0.02 1.38 16 38 H 0.27 15.73 8.31 -92.70 -0.77 14.96 16 39 H 0.08 0.72 8.08 -2.39 -0.02 0.70 16 40 H 0.11 0.60 8.14 -2.38 -0.02 0.58 16 41 H 0.07 0.44 8.12 -2.39 -0.02 0.42 16 42 H 0.12 -0.03 8.14 -2.38 -0.02 -0.05 16 43 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 44 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -83.81 368.31 -1.08 -84.88 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: 0.27 Total: 21.60 kcal Atomic # 6 Polarization: -51.44 SS G_CDS: 5.61 Total: -45.83 kcal Atomic # 7 Polarization: -112.20 SS G_CDS: -3.99 Total: -116.19 kcal Atomic # 8 Polarization: -81.16 SS G_CDS: -4.54 Total: -85.71 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.88 Total: 46.85 kcal Atomic # 16 Polarization: 94.70 SS G_CDS: -0.31 Total: 94.39 kcal Total: -83.81 -1.08 -84.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374437817.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.297 kcal (2) G-P(sol) polarization free energy of solvation -83.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds