Wall clock time and date at job start Tue Mar 31 2020 14:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30836 * 125.90082 * 2 1 4 4 N 1.40084 * 108.20445 * 180.25761 * 3 2 1 5 5 H 0.97005 * 126.03559 * 179.70308 * 4 3 2 6 6 C 1.34940 * 107.92776 * 359.71411 * 4 3 2 7 7 C 1.35315 * 107.74744 * 0.02562 * 6 4 3 8 8 C 1.50702 * 126.04489 * 180.02562 * 7 6 4 9 9 C 1.53041 * 109.45918 * 60.01552 * 8 7 6 10 10 C 1.53194 * 109.30970 * 178.62951 * 9 8 7 11 11 N 1.46923 * 108.77322 * 54.64020 * 10 9 8 12 12 S 1.65608 * 120.62912 * 126.36675 * 11 10 9 13 13 O 1.42105 * 104.27567 * 206.06737 * 12 11 10 14 14 O 1.42099 * 104.27801 * 333.92707 * 12 11 10 15 15 C 1.81397 * 104.44917 * 89.99778 * 12 11 10 16 16 C 1.53002 * 109.47293 * 179.97438 * 15 12 11 17 17 C 1.50702 * 109.47210 * 179.97438 * 16 15 12 18 18 H 1.07998 * 120.00272 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99776 * 179.97438 * 17 16 15 20 20 N 1.31507 * 119.99704 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99953 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47011 * 89.99885 * 21 19 17 23 23 H 1.48497 * 109.46958 * 209.99916 * 21 19 17 24 24 H 1.48502 * 109.47133 * 329.99995 * 21 19 17 25 25 C 1.46927 * 118.73985 * 306.63925 * 11 10 9 26 26 C 1.52758 * 109.00682 * 53.30967 * 25 11 10 27 27 H 1.08998 * 109.47349 * 270.21314 * 1 2 3 28 28 H 1.09001 * 109.47388 * 30.21399 * 1 2 3 29 29 H 1.09009 * 109.47109 * 150.21468 * 1 2 3 30 30 H 1.07998 * 126.12862 * 179.97438 * 6 4 3 31 31 H 1.08996 * 109.45927 * 179.97438 * 8 7 6 32 32 H 1.09004 * 109.49946 * 58.68421 * 9 8 7 33 33 H 1.08997 * 109.50160 * 298.58523 * 9 8 7 34 34 H 1.08998 * 109.58766 * 294.84948 * 10 9 8 35 35 H 1.09011 * 109.69991 * 174.49426 * 10 9 8 36 36 H 1.09001 * 109.47492 * 299.99928 * 15 12 11 37 37 H 1.09001 * 109.47146 * 59.99771 * 15 12 11 38 38 H 1.09001 * 109.47069 * 300.00526 * 16 15 12 39 39 H 1.09001 * 109.46935 * 59.99981 * 16 15 12 40 40 H 0.97001 * 119.99825 * 180.02562 * 20 19 17 41 41 H 1.08996 * 109.58448 * 173.15047 * 25 11 10 42 42 H 1.09005 * 109.57966 * 293.57140 * 25 11 10 43 43 H 1.08998 * 109.56153 * 185.55612 * 26 25 11 44 44 H 1.09003 * 109.38437 * 65.51806 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6340 -0.0060 5 1 4.3908 1.2079 -0.0114 6 6 3.6142 -0.7154 -0.0032 7 6 2.3272 -1.1331 0.0038 8 6 1.8598 -2.5658 0.0096 9 6 2.3931 -3.2709 1.2588 10 6 1.8879 -4.7171 1.2787 11 7 2.2608 -5.3656 0.0143 12 16 3.0994 -6.7937 0.0137 13 8 3.7927 -6.7925 -1.2267 14 8 3.8047 -6.7864 1.2473 15 6 1.8138 -8.0735 0.0231 16 6 2.4700 -9.4556 0.0227 17 6 1.4020 -10.5188 0.0311 18 1 0.3595 -10.2369 0.0359 19 6 1.7559 -11.8514 0.0318 20 7 0.8239 -12.7792 0.0386 21 14 3.5591 -12.3390 0.0228 22 1 4.0446 -12.4654 1.4206 23 1 3.7167 -13.6399 -0.6756 24 1 4.3496 -11.2990 -0.6835 25 6 1.8810 -4.7201 -1.2498 26 6 2.3813 -3.2768 -1.2413 27 1 -0.3634 0.0038 1.0276 28 1 -0.3634 0.8880 -0.5171 29 1 -0.3634 -0.8920 -0.5105 30 1 4.4891 -1.3486 -0.0067 31 1 0.7702 -2.5923 0.0151 32 1 2.0404 -2.7501 2.1491 33 1 3.4829 -3.2664 1.2419 34 1 0.8033 -4.7238 1.3870 35 1 2.3417 -5.2534 2.1123 36 1 1.1981 -7.9635 0.9158 37 1 1.1895 -7.9678 -0.8641 38 1 3.0855 -9.5653 -0.8702 39 1 3.0946 -9.5615 0.9097 40 1 1.0728 -13.7167 0.0394 41 1 2.3321 -5.2570 -2.0842 42 1 0.7957 -4.7272 -1.3519 43 1 2.0202 -2.7602 -2.1306 44 1 3.4713 -3.2718 -1.2350 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375140385.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:35 Heat of formation + Delta-G solvation = -13.867772 kcal Electronic energy + Delta-G solvation = -26015.015986 eV Core-core repulsion = 22288.483860 eV Total energy + Delta-G solvation = -3726.532126 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.61195 -38.53327 -36.78473 -35.55924 -33.94530 -33.87012 -32.82752 -31.47531 -31.17247 -29.26568 -28.10793 -25.96403 -24.57106 -23.42339 -21.91991 -21.17971 -20.09166 -19.61434 -18.43265 -18.18527 -17.60636 -16.92006 -15.97338 -15.55015 -15.19476 -14.71353 -14.69927 -14.40445 -14.32937 -14.17255 -13.79386 -13.69613 -13.56341 -13.09085 -13.02335 -12.79965 -12.53373 -12.40128 -12.05656 -11.90136 -11.73142 -11.65779 -11.27247 -11.23653 -11.20027 -11.17535 -10.94834 -10.82440 -10.45315 -10.38183 -10.14011 -9.72327 -9.63741 -9.41947 -8.82856 -8.68428 -8.66568 -6.16764 -4.17912 0.64510 1.61807 2.45167 2.60481 2.92307 3.26215 3.33605 3.37699 4.19292 4.35585 4.36928 4.46623 4.47321 4.62635 4.68573 4.87489 4.99420 5.06898 5.11815 5.15114 5.27770 5.29932 5.35811 5.44513 5.52919 5.53621 5.54871 5.62657 5.68307 5.72202 5.77662 5.84488 5.89090 5.98192 6.18541 6.28729 6.30152 6.41068 6.66047 6.82110 6.94381 6.99193 7.40866 7.54824 8.36598 8.84566 9.42972 10.95643 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.032903 B = 0.002621 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.774086 B =10679.655665 C =11007.166745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.081 3.919 3 N -0.300 5.300 4 N -0.480 5.480 5 H 0.438 0.562 6 C 0.063 3.937 7 C -0.223 4.223 8 C -0.008 4.008 9 C -0.120 4.120 10 C 0.117 3.883 11 N -1.004 6.004 12 S 2.587 3.413 13 O -0.965 6.965 14 O -0.965 6.965 15 C -0.583 4.583 16 C -0.007 4.007 17 C -0.519 4.519 18 H 0.078 0.922 19 C 0.071 3.929 20 N -0.896 5.896 21 Si 0.869 3.131 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.262 1.262 25 C 0.117 3.883 26 C -0.121 4.121 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.174 0.826 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.032 0.968 39 H 0.027 0.973 40 H 0.266 0.734 41 H 0.095 0.905 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.437 25.973 -0.096 26.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.086 4.086 3 N -0.124 5.124 4 N -0.187 5.187 5 H 0.282 0.718 6 C -0.084 4.084 7 C -0.235 4.235 8 C -0.028 4.028 9 C -0.159 4.159 10 C -0.009 4.009 11 N -0.841 5.841 12 S 2.686 3.314 13 O -0.955 6.955 14 O -0.955 6.955 15 C -0.716 4.716 16 C -0.047 4.047 17 C -0.558 4.558 18 H 0.096 0.904 19 C -0.131 4.131 20 N -0.534 5.534 21 Si 0.695 3.305 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.186 1.186 25 C -0.008 4.008 26 C -0.160 4.160 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.191 0.809 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.113 0.887 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.050 0.950 39 H 0.045 0.955 40 H 0.076 0.924 41 H 0.113 0.887 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.395 26.991 -0.103 27.097 hybrid contribution 0.740 -1.120 0.023 1.342 sum 3.135 25.871 -0.080 26.060 Atomic orbital electron populations 1.20205 0.86740 1.03383 1.03087 1.22291 0.96972 0.90238 0.99061 1.77265 0.86794 1.22655 1.25705 1.46173 1.07228 1.05520 1.59803 0.71799 1.22375 0.99568 0.85108 1.01348 1.19968 0.91721 0.95959 1.15828 1.19443 1.00230 0.88225 0.94866 1.21917 1.01358 0.94871 0.97785 1.21442 1.00206 0.93687 0.85521 1.57863 1.75660 1.39203 1.11416 1.05701 0.76790 0.74775 0.74094 1.93531 1.70916 1.86011 1.45052 1.93530 1.70401 1.86004 1.45596 1.30346 1.16572 1.13794 1.10855 1.19409 0.97571 0.89909 0.97767 1.20855 0.93539 0.89195 1.52209 0.90413 1.24991 0.97539 0.96457 0.94159 1.69879 1.32821 1.00634 1.50025 0.86925 0.85772 0.78627 0.79127 1.19674 1.20757 1.18624 1.21352 1.00152 0.93777 0.85564 1.21854 1.01456 0.94902 0.97808 0.90441 0.90981 0.90169 0.80908 0.90074 0.90858 0.91555 0.91359 0.88729 0.85703 0.85681 0.95010 0.95462 0.92384 0.88718 0.91384 0.90824 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.11 36.01 0.36 -0.14 16 2 C 0.08 0.77 7.22 -82.40 -0.59 0.17 16 3 N -0.30 -3.15 12.70 33.67 0.43 -2.73 16 4 N -0.48 -3.84 7.36 30.44 0.22 -3.61 16 5 H 0.44 2.14 8.96 -182.61 -1.64 0.51 16 6 C 0.06 0.50 11.36 -17.23 -0.20 0.31 16 7 C -0.22 -1.97 4.84 -105.05 -0.51 -2.48 16 8 C -0.01 -0.07 2.47 -91.73 -0.23 -0.29 16 9 C -0.12 -1.07 5.22 -26.61 -0.14 -1.21 16 10 C 0.12 1.20 6.43 -3.71 -0.02 1.18 16 11 N -1.00 -12.26 3.23 -113.76 -0.37 -12.63 16 12 S 2.59 42.96 5.45 -107.50 -0.59 42.37 16 13 O -0.96 -18.36 16.58 -57.54 -0.95 -19.31 16 14 O -0.96 -18.30 16.59 -57.54 -0.95 -19.26 16 15 C -0.58 -10.49 6.12 37.16 0.23 -10.27 16 16 C -0.01 -0.17 4.05 -27.88 -0.11 -0.28 16 17 C -0.52 -14.43 9.66 -34.44 -0.33 -14.76 16 18 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 19 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 20 N -0.90 -26.97 13.96 55.43 0.77 -26.20 16 21 Si 0.87 21.40 27.47 -169.99 -4.67 16.73 16 22 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 24 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 25 C 0.12 1.20 6.40 -3.93 -0.03 1.18 16 26 C -0.12 -1.08 5.21 -26.84 -0.14 -1.22 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.44 7.24 -51.92 -0.38 0.06 16 30 H 0.17 1.02 8.06 -52.49 -0.42 0.59 16 31 H 0.08 0.60 6.91 -51.93 -0.36 0.24 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.64 8.04 -51.93 -0.42 0.22 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.09 1.05 6.86 -51.92 -0.36 0.70 16 36 H 0.12 2.04 8.14 -51.92 -0.42 1.62 16 37 H 0.12 2.05 8.14 -51.92 -0.42 1.63 16 38 H 0.03 0.75 7.20 -51.93 -0.37 0.38 16 39 H 0.03 0.63 7.57 -51.93 -0.39 0.24 16 40 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.09 1.06 6.85 -51.93 -0.36 0.70 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.64 8.04 -51.93 -0.42 0.22 16 LS Contribution 365.81 15.07 5.51 5.51 Total: -1.00 -36.13 365.81 -10.47 -46.60 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -8.08 Total: -1.61 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: -1.80 Total: -25.88 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: 1.06 Total: -45.17 kcal Atomic # 8 Polarization: -36.66 SS G_CDS: -1.91 Total: -38.57 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Atomic # 16 Polarization: 42.96 SS G_CDS: -0.59 Total: 42.37 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.13 -10.47 -46.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375140385.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.737 kcal (2) G-P(sol) polarization free energy of solvation -36.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds