Wall clock time and date at job start Tue Mar 31 2020 14:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30836 * 125.90082 * 2 1 4 4 N 1.40084 * 108.20445 * 180.25761 * 3 2 1 5 5 H 0.97005 * 126.03559 * 179.70308 * 4 3 2 6 6 C 1.34940 * 107.92776 * 359.71411 * 4 3 2 7 7 C 1.35315 * 107.74744 * 0.02562 * 6 4 3 8 8 C 1.50702 * 126.04489 * 180.02562 * 7 6 4 9 9 C 1.53041 * 109.45918 * 60.01552 * 8 7 6 10 10 C 1.53194 * 109.30970 * 178.62951 * 9 8 7 11 11 N 1.46923 * 108.77322 * 54.64020 * 10 9 8 12 12 S 1.65608 * 120.62912 * 126.36675 * 11 10 9 13 13 O 1.42105 * 104.27567 * 206.06737 * 12 11 10 14 14 O 1.42099 * 104.27801 * 333.92707 * 12 11 10 15 15 C 1.81397 * 104.44917 * 89.99778 * 12 11 10 16 16 C 1.53002 * 109.47293 * 179.97438 * 15 12 11 17 17 C 1.50702 * 109.47210 * 179.97438 * 16 15 12 18 18 H 1.07998 * 120.00272 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99776 * 179.97438 * 17 16 15 20 20 N 1.31507 * 119.99704 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99953 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47011 * 89.99885 * 21 19 17 23 23 H 1.48497 * 109.46958 * 209.99916 * 21 19 17 24 24 H 1.48502 * 109.47133 * 329.99995 * 21 19 17 25 25 C 1.46927 * 118.73985 * 306.63925 * 11 10 9 26 26 C 1.52758 * 109.00682 * 53.30967 * 25 11 10 27 27 H 1.08998 * 109.47349 * 270.21314 * 1 2 3 28 28 H 1.09001 * 109.47388 * 30.21399 * 1 2 3 29 29 H 1.09009 * 109.47109 * 150.21468 * 1 2 3 30 30 H 1.07998 * 126.12862 * 179.97438 * 6 4 3 31 31 H 1.08996 * 109.45927 * 179.97438 * 8 7 6 32 32 H 1.09004 * 109.49946 * 58.68421 * 9 8 7 33 33 H 1.08997 * 109.50160 * 298.58523 * 9 8 7 34 34 H 1.08998 * 109.58766 * 294.84948 * 10 9 8 35 35 H 1.09011 * 109.69991 * 174.49426 * 10 9 8 36 36 H 1.09001 * 109.47492 * 299.99928 * 15 12 11 37 37 H 1.09001 * 109.47146 * 59.99771 * 15 12 11 38 38 H 1.09001 * 109.47069 * 300.00526 * 16 15 12 39 39 H 1.09001 * 109.46935 * 59.99981 * 16 15 12 40 40 H 0.97001 * 119.99825 * 180.02562 * 20 19 17 41 41 H 1.08996 * 109.58448 * 173.15047 * 25 11 10 42 42 H 1.09005 * 109.57966 * 293.57140 * 25 11 10 43 43 H 1.08998 * 109.56153 * 185.55612 * 26 25 11 44 44 H 1.09003 * 109.38437 * 65.51806 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6340 -0.0060 5 1 4.3908 1.2079 -0.0114 6 6 3.6142 -0.7154 -0.0032 7 6 2.3272 -1.1331 0.0038 8 6 1.8598 -2.5658 0.0096 9 6 2.3931 -3.2709 1.2588 10 6 1.8879 -4.7171 1.2787 11 7 2.2608 -5.3656 0.0143 12 16 3.0994 -6.7937 0.0137 13 8 3.7927 -6.7925 -1.2267 14 8 3.8047 -6.7864 1.2473 15 6 1.8138 -8.0735 0.0231 16 6 2.4700 -9.4556 0.0227 17 6 1.4020 -10.5188 0.0311 18 1 0.3595 -10.2369 0.0359 19 6 1.7559 -11.8514 0.0318 20 7 0.8239 -12.7792 0.0386 21 14 3.5591 -12.3390 0.0228 22 1 4.0446 -12.4654 1.4206 23 1 3.7167 -13.6399 -0.6756 24 1 4.3496 -11.2990 -0.6835 25 6 1.8810 -4.7201 -1.2498 26 6 2.3813 -3.2768 -1.2413 27 1 -0.3634 0.0038 1.0276 28 1 -0.3634 0.8880 -0.5171 29 1 -0.3634 -0.8920 -0.5105 30 1 4.4891 -1.3486 -0.0067 31 1 0.7702 -2.5923 0.0151 32 1 2.0404 -2.7501 2.1491 33 1 3.4829 -3.2664 1.2419 34 1 0.8033 -4.7238 1.3870 35 1 2.3417 -5.2534 2.1123 36 1 1.1981 -7.9635 0.9158 37 1 1.1895 -7.9678 -0.8641 38 1 3.0855 -9.5653 -0.8702 39 1 3.0946 -9.5615 0.9097 40 1 1.0728 -13.7167 0.0394 41 1 2.3321 -5.2570 -2.0842 42 1 0.7957 -4.7272 -1.3519 43 1 2.0202 -2.7602 -2.1306 44 1 3.4713 -3.2718 -1.2350 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375140385.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:34 Heat of formation + Delta-G solvation = -39.923908 kcal Electronic energy + Delta-G solvation = -26016.145864 eV Core-core repulsion = 22288.483860 eV Total energy + Delta-G solvation = -3727.662005 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.22882 -39.32085 -38.19625 -36.97966 -35.87014 -34.61859 -33.46881 -33.44124 -31.93265 -29.97130 -28.66224 -27.84290 -25.35568 -24.18672 -23.11798 -22.53728 -20.86219 -20.29382 -19.70238 -19.12449 -18.82513 -18.38735 -17.19046 -17.00062 -16.38713 -15.85447 -15.75340 -15.31506 -15.17320 -15.13177 -14.95909 -14.78837 -14.51254 -14.44365 -13.78521 -13.61613 -13.56889 -13.46359 -13.18313 -13.12225 -13.04896 -12.92390 -12.90480 -12.83754 -12.22594 -12.05581 -12.01272 -11.91894 -11.70855 -11.59171 -11.55980 -11.24725 -11.04607 -10.83564 -10.27047 -9.82493 -9.31201 -8.35631 -6.41144 -0.68496 1.00368 1.32604 1.34419 1.44580 1.76847 1.82354 2.08089 2.30347 2.86132 2.98289 3.21546 3.68223 3.82904 3.88480 4.01473 4.06169 4.08551 4.18388 4.34679 4.44263 4.47628 4.56840 4.58867 4.64606 4.82165 4.89133 4.95027 4.95204 4.95531 5.07509 5.09757 5.13814 5.15054 5.16600 5.23114 5.30129 5.40583 5.49112 5.64464 5.79491 5.82229 6.18169 6.48866 6.64997 6.79743 7.23203 8.79910 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.032903 B = 0.002621 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.774086 B =10679.655665 C =11007.166745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.072 3.928 3 N -0.336 5.336 4 N -0.477 5.477 5 H 0.449 0.551 6 C 0.064 3.936 7 C -0.236 4.236 8 C 0.000 4.000 9 C -0.117 4.117 10 C 0.108 3.892 11 N -0.994 5.994 12 S 2.614 3.386 13 O -0.989 6.989 14 O -0.989 6.989 15 C -0.590 4.590 16 C -0.017 4.017 17 C -0.526 4.526 18 H 0.050 0.950 19 C 0.013 3.987 20 N -0.940 5.940 21 Si 0.925 3.075 22 H -0.261 1.261 23 H -0.274 1.274 24 H -0.250 1.250 25 C 0.108 3.892 26 C -0.117 4.117 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.192 0.808 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.056 0.944 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.030 0.970 39 H 0.029 0.971 40 H 0.270 0.730 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.846 27.569 -0.075 27.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 N -0.161 5.161 4 N -0.185 5.185 5 H 0.295 0.705 6 C -0.084 4.084 7 C -0.247 4.247 8 C -0.020 4.020 9 C -0.156 4.156 10 C -0.016 4.016 11 N -0.834 5.834 12 S 2.712 3.288 13 O -0.980 6.980 14 O -0.979 6.979 15 C -0.721 4.721 16 C -0.056 4.056 17 C -0.565 4.565 18 H 0.068 0.932 19 C -0.186 4.186 20 N -0.580 5.580 21 Si 0.747 3.253 22 H -0.185 1.185 23 H -0.199 1.199 24 H -0.173 1.173 25 C -0.016 4.016 26 C -0.157 4.157 27 H 0.104 0.896 28 H 0.090 0.910 29 H 0.113 0.887 30 H 0.209 0.791 31 H 0.114 0.886 32 H 0.104 0.896 33 H 0.075 0.925 34 H 0.113 0.887 35 H 0.102 0.898 36 H 0.157 0.843 37 H 0.157 0.843 38 H 0.049 0.951 39 H 0.047 0.953 40 H 0.079 0.921 41 H 0.102 0.898 42 H 0.113 0.887 43 H 0.105 0.895 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.804 28.589 -0.081 28.727 hybrid contribution 0.543 -1.503 0.018 1.598 sum 3.347 27.087 -0.064 27.293 Atomic orbital electron populations 1.20309 0.85249 1.04086 1.03816 1.22735 0.98128 0.90145 0.98404 1.77217 0.87885 1.23799 1.27227 1.46225 1.07090 1.05863 1.59320 0.70546 1.22743 1.00180 0.85221 1.00221 1.20068 0.91943 0.96041 1.16652 1.19386 1.01014 0.87639 0.93947 1.21900 1.00823 0.94035 0.98826 1.21721 1.01881 0.94016 0.83998 1.57538 1.75388 1.37270 1.13173 1.04641 0.76206 0.75085 0.72877 1.93496 1.71703 1.86639 1.46126 1.93495 1.71183 1.86619 1.46622 1.30365 1.17633 1.11729 1.12329 1.19368 0.96716 0.91879 0.97670 1.21188 0.93548 0.90593 1.51205 0.93219 1.25881 1.02024 0.96649 0.94035 1.70007 1.35086 1.01152 1.51725 0.86026 0.80538 0.78805 0.79881 1.18527 1.19918 1.17335 1.21630 1.01830 0.94115 0.84031 1.21837 1.00921 0.94057 0.98853 0.89621 0.91034 0.88728 0.79142 0.88577 0.89574 0.92527 0.88667 0.89768 0.84323 0.84344 0.95130 0.95251 0.92137 0.89785 0.88678 0.89506 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 10.11 71.24 0.72 -0.13 16 2 C 0.07 1.22 7.22 43.10 0.31 1.53 16 3 N -0.34 -6.67 12.70 -47.38 -0.60 -7.27 16 4 N -0.48 -6.95 7.36 -57.60 -0.42 -7.38 16 5 H 0.45 3.88 8.96 -213.32 -1.91 1.96 16 6 C 0.06 0.90 11.36 83.54 0.95 1.84 16 7 C -0.24 -3.60 4.84 -20.14 -0.10 -3.70 16 8 C 0.00 0.00 2.47 -11.51 -0.03 -0.03 16 9 C -0.12 -1.77 5.22 30.67 0.16 -1.61 16 10 C 0.11 1.93 6.43 86.36 0.56 2.49 16 11 N -0.99 -21.98 3.23 -513.84 -1.66 -23.64 16 12 S 2.61 83.23 5.45 -56.49 -0.31 82.92 16 13 O -0.99 -36.54 16.58 -127.65 -2.12 -38.66 16 14 O -0.99 -36.38 16.59 -127.65 -2.12 -38.50 16 15 C -0.59 -20.62 6.12 71.98 0.44 -20.18 16 16 C -0.02 -0.81 4.05 29.85 0.12 -0.69 16 17 C -0.53 -29.61 9.66 25.60 0.25 -29.37 16 18 H 0.05 2.98 7.99 -2.91 -0.02 2.96 16 19 C 0.01 0.73 5.47 84.66 0.46 1.19 16 20 N -0.94 -57.63 13.96 21.45 0.30 -57.33 16 21 Si 0.92 43.72 27.47 68.60 1.88 45.61 16 22 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 23 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.25 -11.21 6.54 99.48 0.65 -10.56 16 25 C 0.11 1.93 6.40 86.22 0.55 2.49 16 26 C -0.12 -1.78 5.21 30.53 0.16 -1.62 16 27 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.09 0.75 7.24 -2.38 -0.02 0.73 16 30 H 0.19 1.83 8.06 -2.91 -0.02 1.81 16 31 H 0.10 1.03 6.91 -2.39 -0.02 1.02 16 32 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.06 0.97 8.04 -2.39 -0.02 0.96 16 34 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.08 1.71 6.86 -2.38 -0.02 1.70 16 36 H 0.14 4.38 8.14 -2.39 -0.02 4.36 16 37 H 0.14 4.38 8.14 -2.39 -0.02 4.36 16 38 H 0.03 1.42 7.20 -2.39 -0.02 1.40 16 39 H 0.03 1.34 7.57 -2.39 -0.02 1.32 16 40 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 41 H 0.08 1.72 6.85 -2.39 -0.02 1.70 16 42 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 43 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.06 0.97 8.04 -2.39 -0.02 0.95 16 Total: -1.00 -78.03 365.81 -1.45 -79.48 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -0.96 Total: 12.55 kcal Atomic # 6 Polarization: -52.33 SS G_CDS: 4.55 Total: -47.78 kcal Atomic # 7 Polarization: -93.23 SS G_CDS: -2.38 Total: -95.61 kcal Atomic # 8 Polarization: -72.93 SS G_CDS: -4.23 Total: -77.16 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.88 Total: 45.61 kcal Atomic # 16 Polarization: 83.23 SS G_CDS: -0.31 Total: 82.92 kcal Total: -78.03 -1.45 -79.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375140385.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.553 kcal (2) G-P(sol) polarization free energy of solvation -78.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds