Wall clock time and date at job start Tue Mar 31 2020 15:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39862 * 126.04327 * 2 1 4 4 N 1.30841 * 108.20118 * 180.02562 * 3 2 1 5 5 N 1.40076 * 108.20794 * 359.97438 * 4 3 2 6 6 C 1.46506 * 126.03935 * 180.02562 * 5 4 3 7 7 H 1.08997 * 110.88551 * 337.45367 * 6 5 4 8 8 C 1.55155 * 111.00693 * 213.57010 * 6 5 4 9 9 C 1.54315 * 102.94487 * 206.42456 * 8 6 5 10 10 N 1.47022 * 107.27154 * 22.19299 * 9 8 6 11 11 S 1.65601 * 125.65203 * 181.02287 * 10 9 8 12 12 O 1.42104 * 104.27339 * 333.95292 * 11 10 9 13 13 O 1.42097 * 104.27825 * 206.10192 * 11 10 9 14 14 C 1.81399 * 104.44938 * 90.02400 * 11 10 9 15 15 C 1.53001 * 109.46756 * 180.02562 * 14 11 10 16 16 C 1.53002 * 109.46852 * 180.02562 * 15 14 11 17 17 C 1.50703 * 109.47207 * 179.97438 * 16 15 14 18 18 H 1.07994 * 119.99603 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99838 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00380 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99848 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47261 * 239.99776 * 21 19 17 24 24 H 1.48500 * 109.47454 * 119.99769 * 21 19 17 25 25 C 1.47428 * 108.70242 * 1.28785 * 10 9 8 26 26 C 1.34949 * 107.92654 * 0.26656 * 5 4 3 27 27 H 1.09000 * 109.47298 * 89.97345 * 1 2 3 28 28 H 1.08999 * 109.47084 * 209.97825 * 1 2 3 29 29 H 1.09001 * 109.46887 * 329.97613 * 1 2 3 30 30 H 1.07995 * 125.89757 * 359.97438 * 3 2 1 31 31 H 1.09000 * 110.72057 * 88.06101 * 8 6 5 32 32 H 1.09000 * 110.87428 * 324.86422 * 8 6 5 33 33 H 1.08994 * 109.88481 * 262.77873 * 9 8 6 34 34 H 1.09000 * 110.01287 * 141.68245 * 9 8 6 35 35 H 1.08999 * 109.47052 * 60.00587 * 14 11 10 36 36 H 1.08998 * 109.47210 * 300.00195 * 14 11 10 37 37 H 1.08993 * 109.47525 * 60.00124 * 15 14 11 38 38 H 1.09006 * 109.47247 * 299.99575 * 15 14 11 39 39 H 1.09005 * 109.47493 * 59.99815 * 16 15 14 40 40 H 1.08998 * 109.47006 * 299.99778 * 16 15 14 41 41 H 0.97001 * 119.99667 * 0.02562 * 20 19 17 42 42 H 1.09004 * 110.36615 * 94.47825 * 25 10 9 43 43 H 1.09000 * 110.36888 * 216.80382 * 25 10 9 44 44 H 1.07999 * 126.13059 * 179.74125 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3300 1.1309 0.0000 4 7 3.5754 0.7300 -0.0006 5 7 3.5844 -0.6707 -0.0003 6 6 4.7745 -1.5251 -0.0003 7 1 5.6387 -0.9877 -0.3909 8 6 4.5225 -2.8300 -0.8010 9 6 5.5066 -3.8276 -0.1547 10 7 5.8189 -3.3233 1.1906 11 16 6.8520 -4.0341 2.2721 12 8 6.8418 -5.4094 1.9144 13 8 6.3807 -3.6039 3.5417 14 6 8.4676 -3.2938 1.9084 15 6 9.5202 -3.8773 2.8532 16 6 10.8828 -3.2524 2.5469 17 6 11.9195 -3.8266 3.4778 18 1 11.6348 -4.5632 4.2145 19 6 13.2311 -3.4108 3.3897 20 7 13.5776 -2.5134 2.4929 21 14 14.5162 -4.1230 4.5431 22 1 13.8749 -5.1072 5.4517 23 1 15.1211 -3.0299 5.3459 24 1 15.5743 -4.7979 3.7492 25 6 5.0551 -2.0833 1.4197 26 6 2.3031 -1.0943 -0.0056 27 1 -0.3634 0.0005 -1.0276 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3633 0.8898 0.5142 30 1 1.9952 2.1576 -0.0004 31 1 4.7562 -2.6863 -1.8559 32 1 3.4938 -3.1685 -0.6781 33 1 6.4182 -3.8870 -0.7491 34 1 5.0459 -4.8129 -0.0834 35 1 8.4123 -2.2142 2.0480 36 1 8.7440 -3.5132 0.8771 37 1 9.5755 -4.9568 2.7133 38 1 9.2440 -3.6582 3.8847 39 1 10.8273 -2.1728 2.6870 40 1 11.1592 -3.4711 1.5155 41 1 12.9103 -2.1438 1.8937 42 1 4.1200 -2.3034 1.9348 43 1 5.6484 -1.3731 1.9956 44 1 1.9723 -2.1223 -0.0108 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377726815.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:48 Heat of formation + Delta-G solvation = -4.798478 kcal Electronic energy + Delta-G solvation = -25407.190110 eV Core-core repulsion = 21681.051258 eV Total energy + Delta-G solvation = -3726.138852 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.65387 -38.86201 -37.10132 -35.93826 -34.98240 -33.70210 -32.33259 -32.03458 -30.31960 -29.10325 -27.54112 -26.57698 -23.67930 -23.19202 -22.56344 -21.00137 -20.84721 -20.32588 -19.11891 -18.01472 -17.25802 -16.98948 -16.39265 -16.00650 -15.61666 -15.21400 -14.64484 -14.52240 -14.17644 -13.94565 -13.82693 -13.77538 -13.62232 -13.34519 -13.23341 -13.06595 -12.40774 -12.24440 -12.15323 -12.12557 -12.07830 -11.97878 -11.88988 -11.84088 -11.51930 -11.41279 -10.87931 -10.86324 -10.82400 -10.16378 -10.14870 -9.94143 -9.73502 -9.31909 -8.64969 -8.61334 -8.39586 -6.43869 -4.13988 0.18432 1.53799 1.98976 2.48481 2.59680 3.41636 3.45201 3.59144 3.69136 3.80005 3.92571 4.12437 4.33388 4.42154 4.48985 4.50958 4.66753 4.75021 4.91013 4.94344 4.97975 5.03545 5.13419 5.18739 5.28182 5.32889 5.34101 5.38492 5.45089 5.53262 5.61732 5.69039 5.72479 5.83480 5.91998 6.11078 6.24626 6.35118 6.65823 6.68075 7.22126 7.33862 7.39450 8.09739 8.38963 8.80064 9.58441 10.96947 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.022582 B = 0.002363 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.642356 B =11845.591098 C =12426.575436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.242 4.242 3 C 0.049 3.951 4 N -0.291 5.291 5 N -0.363 5.363 6 C 0.149 3.851 7 H 0.123 0.877 8 C -0.137 4.137 9 C 0.122 3.878 10 N -1.016 6.016 11 S 2.615 3.385 12 O -0.952 6.952 13 O -0.952 6.952 14 C -0.610 4.610 15 C -0.099 4.099 16 C 0.017 3.983 17 C -0.607 4.607 18 H 0.053 0.947 19 C 0.015 3.985 20 N -0.912 5.912 21 Si 1.075 2.925 22 H -0.288 1.288 23 H -0.286 1.286 24 H -0.286 1.286 25 C 0.116 3.884 26 C 0.055 3.945 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.183 0.817 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.012 0.988 40 H 0.012 0.988 41 H 0.269 0.731 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.254 2.983 -9.494 28.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.254 4.254 3 C -0.137 4.137 4 N -0.111 5.111 5 N -0.145 5.145 6 C 0.045 3.955 7 H 0.141 0.859 8 C -0.177 4.177 9 C -0.004 4.004 10 N -0.853 5.853 11 S 2.713 3.287 12 O -0.942 6.942 13 O -0.943 6.943 14 C -0.742 4.742 15 C -0.138 4.138 16 C -0.021 4.021 17 C -0.646 4.646 18 H 0.071 0.929 19 C -0.189 4.189 20 N -0.548 5.548 21 Si 0.903 3.097 22 H -0.214 1.214 23 H -0.212 1.212 24 H -0.212 1.212 25 C -0.011 4.011 26 C -0.090 4.090 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.200 0.800 31 H 0.114 0.886 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.030 0.970 40 H 0.030 0.970 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.107 0.893 44 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -23.523 2.608 -8.394 25.111 hybrid contribution -2.061 0.215 -0.848 2.239 sum -25.584 2.823 -9.241 27.348 Atomic orbital electron populations 1.20050 0.89257 1.02222 1.01493 1.20160 0.97161 0.91843 1.16213 1.23842 0.89919 0.99899 1.00045 1.77420 1.21325 0.88470 1.23838 1.48411 1.04822 1.04502 1.56742 1.22515 0.86544 0.89793 0.96671 0.85871 1.23065 1.01167 0.92893 1.00554 1.21680 0.99038 0.97689 0.82005 1.58856 1.59634 1.37330 1.29492 1.05101 0.76110 0.74442 0.73052 1.93575 1.86738 1.30514 1.83402 1.93583 1.78971 1.83007 1.38732 1.30613 1.19548 1.13215 1.10842 1.21373 0.95746 1.00287 0.96405 1.19193 0.90084 0.95715 0.97111 1.22117 0.95015 1.27205 1.20227 0.92879 1.25902 0.98676 0.95394 0.98902 1.70741 1.37928 1.27016 1.19159 0.83459 0.75096 0.75818 0.75295 1.21383 1.21247 1.21247 1.22299 0.97611 0.85491 0.95727 1.22269 0.84241 1.00139 1.02398 0.92172 0.92161 0.91823 0.80049 0.88617 0.89450 0.90578 0.89952 0.85435 0.85383 0.91335 0.91366 0.97012 0.97010 0.92100 0.90441 0.89327 0.81121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.39 10.37 36.01 0.37 -0.02 16 2 C -0.24 -1.94 6.10 -105.05 -0.64 -2.58 16 3 C 0.05 0.45 11.96 -17.37 -0.21 0.24 16 4 N -0.29 -3.27 12.58 30.62 0.39 -2.88 16 5 N -0.36 -3.42 3.64 -52.66 -0.19 -3.61 16 6 C 0.15 1.21 4.17 -65.66 -0.27 0.94 16 7 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 8 C -0.14 -0.81 6.37 -24.90 -0.16 -0.97 16 9 C 0.12 0.95 6.89 -3.07 -0.02 0.93 16 10 N -1.02 -10.68 3.62 -111.29 -0.40 -11.08 16 11 S 2.62 37.50 5.65 -107.50 -0.61 36.89 16 12 O -0.95 -16.02 17.60 -57.54 -1.01 -17.03 16 13 O -0.95 -16.54 17.60 -57.54 -1.01 -17.55 16 14 C -0.61 -9.13 6.18 37.16 0.23 -8.90 16 15 C -0.10 -1.99 5.16 -26.73 -0.14 -2.13 16 16 C 0.02 0.43 4.28 -27.88 -0.12 0.31 16 17 C -0.61 -17.33 9.11 -34.44 -0.31 -17.64 16 18 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 19 C 0.02 0.44 5.46 -17.82 -0.10 0.34 16 20 N -0.91 -27.82 13.65 55.43 0.76 -27.06 16 21 Si 1.08 25.44 29.90 -169.99 -5.08 20.36 16 22 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 25 C 0.12 1.12 6.58 -2.41 -0.02 1.11 16 26 C 0.05 0.44 10.48 -17.22 -0.18 0.25 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.18 1.13 8.06 -52.49 -0.42 0.70 16 31 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.42 6.38 -51.93 -0.33 0.09 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.13 1.72 8.14 -51.92 -0.42 1.29 16 36 H 0.13 1.67 8.14 -51.93 -0.42 1.25 16 37 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 39 H 0.01 0.30 8.01 -51.93 -0.42 -0.12 16 40 H 0.01 0.30 8.01 -51.93 -0.42 -0.12 16 41 H 0.27 8.09 7.22 -40.82 -0.29 7.79 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.17 0.88 6.97 -52.49 -0.37 0.52 16 LS Contribution 376.93 15.07 5.68 5.68 Total: -1.00 -37.30 376.93 -10.00 -47.30 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -6.94 Total: -2.88 kcal Atomic # 6 Polarization: -26.56 SS G_CDS: -1.56 Total: -28.13 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: 0.55 Total: -44.64 kcal Atomic # 8 Polarization: -32.55 SS G_CDS: -2.03 Total: -34.58 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -5.08 Total: 20.36 kcal Atomic # 16 Polarization: 37.50 SS G_CDS: -0.61 Total: 36.89 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.30 -10.00 -47.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377726815.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.500 kcal (2) G-P(sol) polarization free energy of solvation -37.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds