Wall clock time and date at job start Tue Mar 31 2020 15:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39862 * 126.04327 * 2 1 4 4 N 1.30841 * 108.20118 * 180.02562 * 3 2 1 5 5 N 1.40076 * 108.20794 * 359.97438 * 4 3 2 6 6 C 1.46506 * 126.03935 * 180.02562 * 5 4 3 7 7 H 1.08997 * 110.88551 * 337.45367 * 6 5 4 8 8 C 1.55155 * 111.00693 * 213.57010 * 6 5 4 9 9 C 1.54315 * 102.94487 * 206.42456 * 8 6 5 10 10 N 1.47022 * 107.27154 * 22.19299 * 9 8 6 11 11 S 1.65601 * 125.65203 * 181.02287 * 10 9 8 12 12 O 1.42104 * 104.27339 * 333.95292 * 11 10 9 13 13 O 1.42097 * 104.27825 * 206.10192 * 11 10 9 14 14 C 1.81399 * 104.44938 * 90.02400 * 11 10 9 15 15 C 1.53001 * 109.46756 * 180.02562 * 14 11 10 16 16 C 1.53002 * 109.46852 * 180.02562 * 15 14 11 17 17 C 1.50703 * 109.47207 * 179.97438 * 16 15 14 18 18 H 1.07994 * 119.99603 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99838 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00380 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99848 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47261 * 239.99776 * 21 19 17 24 24 H 1.48500 * 109.47454 * 119.99769 * 21 19 17 25 25 C 1.47428 * 108.70242 * 1.28785 * 10 9 8 26 26 C 1.34949 * 107.92654 * 0.26656 * 5 4 3 27 27 H 1.09000 * 109.47298 * 89.97345 * 1 2 3 28 28 H 1.08999 * 109.47084 * 209.97825 * 1 2 3 29 29 H 1.09001 * 109.46887 * 329.97613 * 1 2 3 30 30 H 1.07995 * 125.89757 * 359.97438 * 3 2 1 31 31 H 1.09000 * 110.72057 * 88.06101 * 8 6 5 32 32 H 1.09000 * 110.87428 * 324.86422 * 8 6 5 33 33 H 1.08994 * 109.88481 * 262.77873 * 9 8 6 34 34 H 1.09000 * 110.01287 * 141.68245 * 9 8 6 35 35 H 1.08999 * 109.47052 * 60.00587 * 14 11 10 36 36 H 1.08998 * 109.47210 * 300.00195 * 14 11 10 37 37 H 1.08993 * 109.47525 * 60.00124 * 15 14 11 38 38 H 1.09006 * 109.47247 * 299.99575 * 15 14 11 39 39 H 1.09005 * 109.47493 * 59.99815 * 16 15 14 40 40 H 1.08998 * 109.47006 * 299.99778 * 16 15 14 41 41 H 0.97001 * 119.99667 * 0.02562 * 20 19 17 42 42 H 1.09004 * 110.36615 * 94.47825 * 25 10 9 43 43 H 1.09000 * 110.36888 * 216.80382 * 25 10 9 44 44 H 1.07999 * 126.13059 * 179.74125 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3300 1.1309 0.0000 4 7 3.5754 0.7300 -0.0006 5 7 3.5844 -0.6707 -0.0003 6 6 4.7745 -1.5251 -0.0003 7 1 5.6387 -0.9877 -0.3909 8 6 4.5225 -2.8300 -0.8010 9 6 5.5066 -3.8276 -0.1547 10 7 5.8189 -3.3233 1.1906 11 16 6.8520 -4.0341 2.2721 12 8 6.8418 -5.4094 1.9144 13 8 6.3807 -3.6039 3.5417 14 6 8.4676 -3.2938 1.9084 15 6 9.5202 -3.8773 2.8532 16 6 10.8828 -3.2524 2.5469 17 6 11.9195 -3.8266 3.4778 18 1 11.6348 -4.5632 4.2145 19 6 13.2311 -3.4108 3.3897 20 7 13.5776 -2.5134 2.4929 21 14 14.5162 -4.1230 4.5431 22 1 13.8749 -5.1072 5.4517 23 1 15.1211 -3.0299 5.3459 24 1 15.5743 -4.7979 3.7492 25 6 5.0551 -2.0833 1.4197 26 6 2.3031 -1.0943 -0.0056 27 1 -0.3634 0.0005 -1.0276 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3633 0.8898 0.5142 30 1 1.9952 2.1576 -0.0004 31 1 4.7562 -2.6863 -1.8559 32 1 3.4938 -3.1685 -0.6781 33 1 6.4182 -3.8870 -0.7491 34 1 5.0459 -4.8129 -0.0834 35 1 8.4123 -2.2142 2.0480 36 1 8.7440 -3.5132 0.8771 37 1 9.5755 -4.9568 2.7133 38 1 9.2440 -3.6582 3.8847 39 1 10.8273 -2.1728 2.6870 40 1 11.1592 -3.4711 1.5155 41 1 12.9103 -2.1438 1.8937 42 1 4.1200 -2.3034 1.9348 43 1 5.6484 -1.3731 1.9956 44 1 1.9723 -2.1223 -0.0108 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377726815.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:47 Heat of formation + Delta-G solvation = -30.752910 kcal Electronic energy + Delta-G solvation = -25408.315579 eV Core-core repulsion = 21681.051258 eV Total energy + Delta-G solvation = -3727.264320 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.27249 -39.55424 -38.37353 -37.22239 -36.82516 -34.36368 -34.27937 -32.62227 -30.96696 -29.75765 -29.36087 -27.13072 -25.53073 -24.11576 -23.21204 -22.64663 -21.50385 -20.93225 -20.14887 -19.23982 -18.79888 -17.95489 -17.44285 -17.27666 -16.56226 -15.97700 -15.87235 -15.70643 -15.38359 -15.18985 -14.85428 -14.75757 -14.48578 -14.13298 -13.97484 -13.79466 -13.69198 -13.57352 -13.39631 -13.33045 -13.22054 -13.10538 -12.72573 -12.65324 -12.63858 -12.57130 -12.52868 -11.96544 -11.95359 -11.91704 -11.59455 -11.48531 -10.75873 -10.59699 -10.41754 -10.15455 -9.24335 -8.74569 -6.45737 -0.98652 0.91452 1.27410 1.50423 1.59401 1.68558 1.76614 1.87935 2.51968 2.64514 2.86672 3.10334 3.24216 3.30275 3.57907 3.70278 3.79403 3.87089 3.97067 4.08101 4.14700 4.19113 4.30568 4.44003 4.48160 4.56567 4.61993 4.65377 4.74100 4.79508 4.82472 4.89568 4.92960 5.01045 5.03399 5.17807 5.21832 5.28461 5.32682 5.34227 5.77185 5.91581 6.12040 6.12945 6.52043 6.75608 7.35395 8.66941 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.022582 B = 0.002363 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.642356 B =11845.591098 C =12426.575436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.253 4.253 3 C 0.042 3.958 4 N -0.336 5.336 5 N -0.370 5.370 6 C 0.150 3.850 7 H 0.122 0.878 8 C -0.123 4.123 9 C 0.110 3.890 10 N -1.010 6.010 11 S 2.646 3.354 12 O -0.975 6.975 13 O -0.985 6.985 14 C -0.611 4.611 15 C -0.100 4.100 16 C 0.014 3.986 17 C -0.628 4.628 18 H 0.051 0.949 19 C -0.038 4.038 20 N -0.936 5.936 21 Si 1.121 2.879 22 H -0.271 1.271 23 H -0.277 1.277 24 H -0.276 1.276 25 C 0.111 3.889 26 C 0.052 3.948 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.201 0.799 31 H 0.116 0.884 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.141 0.859 36 H 0.149 0.851 37 H 0.068 0.932 38 H 0.064 0.936 39 H -0.002 1.002 40 H 0.002 0.998 41 H 0.258 0.742 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.784 2.325 -10.229 29.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.264 4.264 3 C -0.144 4.144 4 N -0.156 5.156 5 N -0.152 5.152 6 C 0.046 3.954 7 H 0.140 0.860 8 C -0.162 4.162 9 C -0.015 4.015 10 N -0.849 5.849 11 S 2.743 3.257 12 O -0.966 6.966 13 O -0.975 6.975 14 C -0.742 4.742 15 C -0.139 4.139 16 C -0.024 4.024 17 C -0.666 4.666 18 H 0.070 0.930 19 C -0.236 4.236 20 N -0.573 5.573 21 Si 0.942 3.058 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.201 1.201 25 C -0.016 4.016 26 C -0.093 4.093 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.217 0.783 31 H 0.134 0.866 32 H 0.121 0.879 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.160 0.840 36 H 0.167 0.833 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.016 0.984 40 H 0.020 0.980 41 H 0.067 0.933 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -25.065 1.951 -9.135 26.749 hybrid contribution -1.692 0.466 -0.666 1.877 sum -26.757 2.416 -9.801 28.597 Atomic orbital electron populations 1.20087 0.87516 1.02922 1.02191 1.20544 0.98455 0.91515 1.15869 1.24296 0.89671 1.01270 0.99191 1.77358 1.22701 0.89782 1.25762 1.48490 1.05547 1.04063 1.57097 1.22513 0.86566 0.90574 0.95780 0.85987 1.23067 1.01520 0.90663 1.00994 1.22027 1.00477 0.98409 0.80550 1.58427 1.58421 1.37705 1.30329 1.03908 0.75656 0.73604 0.72545 1.93539 1.87069 1.32149 1.83800 1.93538 1.79424 1.83406 1.41141 1.30573 1.18886 1.13979 1.10725 1.21191 0.94795 1.00286 0.97660 1.19137 0.92348 0.95027 0.95865 1.22599 0.96220 1.27131 1.20666 0.93022 1.27444 1.01420 0.95047 0.99656 1.70867 1.37731 1.28469 1.20238 0.82883 0.73121 0.75853 0.73917 1.19567 1.20289 1.20131 1.22400 0.97225 0.84895 0.97055 1.22792 0.83649 1.01469 1.01371 0.91406 0.91325 0.91299 0.78279 0.86611 0.87884 0.89083 0.89480 0.84038 0.83270 0.91285 0.91734 0.98351 0.97984 0.93270 0.90440 0.90116 0.78435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.60 10.37 71.24 0.74 0.14 16 2 C -0.25 -3.61 6.10 -20.14 -0.12 -3.74 16 3 C 0.04 0.71 11.96 85.23 1.02 1.73 16 4 N -0.34 -7.37 12.58 -57.03 -0.72 -8.09 16 5 N -0.37 -6.45 3.64 -320.53 -1.17 -7.62 16 6 C 0.15 2.18 4.17 46.46 0.19 2.38 16 7 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 8 C -0.12 -1.08 6.37 31.78 0.20 -0.87 16 9 C 0.11 1.43 6.89 86.73 0.60 2.03 16 10 N -1.01 -19.64 3.62 -506.03 -1.83 -21.48 16 11 S 2.65 73.70 5.65 -56.49 -0.32 73.38 16 12 O -0.98 -31.83 17.60 -127.65 -2.25 -34.07 16 13 O -0.98 -33.95 17.60 -127.65 -2.25 -36.20 16 14 C -0.61 -17.87 6.18 71.98 0.44 -17.42 16 15 C -0.10 -4.07 5.16 30.60 0.16 -3.91 16 16 C 0.01 0.74 4.28 29.85 0.13 0.87 16 17 C -0.63 -36.29 9.11 25.60 0.23 -36.06 16 18 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 19 C -0.04 -2.22 5.46 84.65 0.46 -1.75 16 20 N -0.94 -57.83 13.65 21.45 0.29 -57.54 16 21 Si 1.12 50.77 29.90 68.60 2.05 52.82 16 22 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 23 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 24 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 25 C 0.11 2.03 6.58 86.93 0.57 2.60 16 26 C 0.05 0.72 10.48 83.54 0.88 1.59 16 27 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.20 2.31 8.06 -2.91 -0.02 2.29 16 31 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.10 0.60 6.38 -2.39 -0.02 0.59 16 33 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.14 3.72 8.14 -2.39 -0.02 3.70 16 36 H 0.15 3.69 8.14 -2.39 -0.02 3.67 16 37 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 38 H 0.06 2.62 8.14 -2.38 -0.02 2.60 16 39 H 0.00 -0.10 8.01 -2.38 -0.02 -0.12 16 40 H 0.00 0.10 8.01 -2.39 -0.02 0.08 16 41 H 0.26 15.95 7.22 -92.71 -0.67 15.28 16 42 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 43 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.20 1.41 6.97 -2.91 -0.02 1.39 16 Total: -1.00 -81.07 376.93 0.40 -80.67 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 1.08 Total: 10.53 kcal Atomic # 6 Polarization: -57.92 SS G_CDS: 5.50 Total: -52.42 kcal Atomic # 7 Polarization: -91.29 SS G_CDS: -3.42 Total: -94.72 kcal Atomic # 8 Polarization: -65.78 SS G_CDS: -4.49 Total: -70.27 kcal Atomic # 14 Polarization: 50.77 SS G_CDS: 2.05 Total: 52.82 kcal Atomic # 16 Polarization: 73.70 SS G_CDS: -0.32 Total: 73.38 kcal Total: -81.07 0.40 -80.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377726815.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.918 kcal (2) G-P(sol) polarization free energy of solvation -81.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds