Wall clock time and date at job start Tue Mar 31 2020 15:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39874 * 126.03998 * 2 1 4 4 N 1.30840 * 108.19904 * 179.73666 * 3 2 1 5 5 N 1.40083 * 108.20752 * 0.40356 * 4 3 2 6 6 C 1.46496 * 126.03727 * 179.85248 * 5 4 3 7 7 H 1.09001 * 110.92089 * 22.24468 * 6 5 4 8 8 C 1.55165 * 111.00397 * 146.14449 * 6 5 4 9 9 C 1.54327 * 102.94078 * 153.57581 * 8 6 5 10 10 N 1.47022 * 107.27336 * 337.80587 * 9 8 6 11 11 S 1.65597 * 125.64521 * 178.90565 * 10 9 8 12 12 O 1.42110 * 104.27280 * 206.09739 * 11 10 9 13 13 O 1.42100 * 104.27744 * 333.95092 * 11 10 9 14 14 C 1.81393 * 104.45073 * 90.02745 * 11 10 9 15 15 C 1.52993 * 109.47369 * 179.97438 * 14 11 10 16 16 C 1.52999 * 109.47548 * 180.02562 * 15 14 11 17 17 C 1.50701 * 109.47646 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99487 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00220 * 180.02562 * 17 16 15 20 20 N 1.31518 * 120.00202 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00096 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47283 * 89.99566 * 21 19 17 23 23 H 1.48502 * 109.47206 * 209.99737 * 21 19 17 24 24 H 1.48503 * 109.46691 * 329.99574 * 21 19 17 25 25 C 1.47425 * 108.70334 * 358.94217 * 10 9 8 26 26 C 1.34945 * 107.92440 * 359.59111 * 5 4 3 27 27 H 1.08999 * 109.47326 * 270.00560 * 1 2 3 28 28 H 1.09009 * 109.46885 * 30.00326 * 1 2 3 29 29 H 1.08999 * 109.47496 * 149.99630 * 1 2 3 30 30 H 1.07997 * 125.90204 * 359.97438 * 3 2 1 31 31 H 1.08993 * 110.71917 * 35.21311 * 8 6 5 32 32 H 1.09002 * 110.71751 * 271.93883 * 8 6 5 33 33 H 1.08997 * 109.87800 * 97.22770 * 9 8 6 34 34 H 1.08998 * 109.87662 * 218.38556 * 9 8 6 35 35 H 1.09002 * 109.47327 * 300.00127 * 14 11 10 36 36 H 1.09005 * 109.47646 * 59.99546 * 14 11 10 37 37 H 1.09001 * 109.47195 * 299.99833 * 15 14 11 38 38 H 1.08998 * 109.47262 * 59.99596 * 15 14 11 39 39 H 1.09001 * 109.46712 * 300.00099 * 16 15 14 40 40 H 1.08998 * 109.47193 * 59.99524 * 16 15 14 41 41 H 0.96990 * 120.00354 * 180.02562 * 20 19 17 42 42 H 1.08997 * 110.36855 * 142.96531 * 25 10 9 43 43 H 1.08997 * 110.36655 * 265.29403 * 25 10 9 44 44 H 1.08003 * 126.12952 * 180.26427 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7302 0.0057 5 7 3.5844 -0.6706 0.0002 6 6 4.7745 -1.5249 0.0007 7 1 5.6389 -0.9878 0.3911 8 6 4.5222 -2.8296 0.8017 9 6 5.5066 -3.8274 0.1559 10 7 5.8194 -3.3233 -1.1894 11 16 6.8543 -4.0336 -2.2696 12 8 7.3020 -2.9588 -3.0844 13 8 7.7623 -4.7641 -1.4566 14 6 5.8053 -5.1631 -3.2258 15 6 6.6561 -5.8876 -4.2707 16 6 5.7712 -6.8399 -5.0777 17 6 6.6093 -7.5541 -6.1066 18 1 7.6672 -7.3489 -6.1781 19 6 6.0254 -8.4685 -6.9573 20 7 4.7370 -8.7180 -6.8705 21 14 7.0641 -9.3532 -8.2331 22 1 7.5994 -10.6099 -7.6507 23 1 6.2271 -9.6736 -9.4172 24 1 8.1916 -8.4792 -8.6458 25 6 5.0599 -2.0805 -1.4170 26 6 2.3031 -1.0942 0.0001 27 1 -0.3634 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3634 -0.8899 -0.5139 30 1 1.9951 2.1578 -0.0004 31 1 3.4934 -3.1666 0.6756 32 1 4.7556 -2.6857 1.8566 33 1 6.4180 -3.8865 0.7508 34 1 5.0434 -4.8115 0.0847 35 1 5.3525 -5.8937 -2.5554 36 1 5.0214 -4.5949 -3.7265 37 1 7.1084 -5.1568 -4.9411 38 1 7.4402 -6.4559 -3.7704 39 1 5.3185 -7.5707 -4.4076 40 1 4.9874 -6.2713 -5.5781 41 1 4.3262 -9.3616 -7.4687 42 1 5.6567 -1.3706 -1.9896 43 1 4.1254 -2.2964 -1.9349 44 1 1.9723 -2.1223 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377726816.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:52 Heat of formation + Delta-G solvation = -1.180229 kcal Electronic energy + Delta-G solvation = -25391.441441 eV Core-core repulsion = 21665.459489 eV Total energy + Delta-G solvation = -3725.981953 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.61873 -38.81215 -37.03399 -35.86810 -34.72977 -33.66075 -32.23179 -31.99260 -30.27171 -29.06386 -27.86092 -26.53276 -23.86052 -23.21881 -22.51014 -20.86050 -20.61861 -20.27965 -19.04126 -17.91666 -17.32266 -16.58939 -16.31068 -15.76895 -15.60898 -15.19035 -14.57669 -14.52473 -14.47199 -14.08722 -13.87044 -13.77097 -13.57350 -13.17882 -13.04238 -12.65204 -12.37407 -12.32126 -12.19495 -12.07453 -12.00188 -11.86246 -11.84545 -11.74656 -11.37045 -11.30099 -10.95390 -10.90254 -10.83614 -10.47500 -10.00650 -9.71244 -9.61699 -9.30901 -9.06682 -8.60843 -8.44301 -6.09236 -4.12517 0.25565 1.57525 2.03654 2.51790 2.64889 3.28150 3.34379 3.38441 3.74304 3.88371 3.96327 4.18887 4.38697 4.39475 4.47297 4.55330 4.71040 4.80088 4.99362 5.00013 5.07019 5.15515 5.18498 5.22337 5.27280 5.33715 5.36076 5.43329 5.48722 5.57669 5.69644 5.74405 5.82068 5.87920 5.99284 6.22163 6.37896 6.38569 6.71923 6.81150 7.42495 7.52135 7.61576 7.88496 8.28589 8.93644 9.52467 11.02011 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.017150 B = 0.002499 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.231208 B =11201.046552 C =12156.010646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.242 4.242 3 C 0.049 3.951 4 N -0.292 5.292 5 N -0.363 5.363 6 C 0.153 3.847 7 H 0.121 0.879 8 C -0.137 4.137 9 C 0.121 3.879 10 N -1.016 6.016 11 S 2.613 3.387 12 O -0.954 6.954 13 O -0.953 6.953 14 C -0.606 4.606 15 C -0.106 4.106 16 C 0.031 3.969 17 C -0.527 4.527 18 H 0.058 0.942 19 C 0.058 3.942 20 N -0.895 5.895 21 Si 0.895 3.105 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.272 1.272 25 C 0.108 3.892 26 C 0.056 3.944 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.182 0.818 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.020 0.980 40 H 0.021 0.979 41 H 0.262 0.738 42 H 0.096 0.904 43 H 0.074 0.926 44 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.875 15.845 18.529 25.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.253 4.253 3 C -0.137 4.137 4 N -0.112 5.112 5 N -0.145 5.145 6 C 0.048 3.952 7 H 0.139 0.861 8 C -0.177 4.177 9 C -0.004 4.004 10 N -0.853 5.853 11 S 2.711 3.289 12 O -0.944 6.944 13 O -0.943 6.943 14 C -0.738 4.738 15 C -0.146 4.146 16 C -0.007 4.007 17 C -0.565 4.565 18 H 0.077 0.923 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.722 3.278 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.197 1.197 25 C -0.019 4.019 26 C -0.090 4.090 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.199 0.801 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.039 0.961 40 H 0.039 0.961 41 H 0.071 0.929 42 H 0.115 0.885 43 H 0.093 0.907 44 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -5.656 16.181 18.361 25.119 hybrid contribution -1.120 -1.124 -0.888 1.818 sum -6.776 15.057 17.473 24.040 Atomic orbital electron populations 1.20056 0.89241 1.02297 1.01488 1.20163 0.97178 0.91836 1.16151 1.23836 0.89933 0.99882 1.00084 1.77401 1.21322 0.88547 1.23943 1.48411 1.04829 1.04475 1.56767 1.22401 0.86363 0.89796 0.96604 0.86090 1.23084 1.01142 0.92969 1.00526 1.21681 0.99011 0.97200 0.82536 1.58827 1.63656 1.35304 1.27528 1.05148 0.74625 0.75217 0.73871 1.93575 1.78773 1.52746 1.69352 1.93571 1.59536 1.74222 1.67008 1.30573 1.15066 1.15146 1.13009 1.21522 0.98287 0.99436 0.95346 1.19061 0.94444 0.93070 0.94143 1.21245 0.95254 1.23048 1.16965 0.92342 1.25021 0.95000 0.96803 0.97546 1.69952 1.10163 1.34648 1.38679 0.86546 0.80227 0.80026 0.80964 1.20537 1.21140 1.19726 1.22325 0.97193 0.86098 0.96258 1.22286 0.84198 1.00202 1.02302 0.92184 0.91839 0.92064 0.80089 0.89381 0.88721 0.90045 0.90479 0.85369 0.85429 0.91519 0.91496 0.96117 0.96113 0.92860 0.88537 0.90730 0.81025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.42 10.37 36.00 0.37 -0.05 16 2 C -0.24 -1.99 6.10 -105.05 -0.64 -2.63 16 3 C 0.05 0.45 11.96 -17.36 -0.21 0.24 16 4 N -0.29 -3.28 12.58 30.63 0.39 -2.90 16 5 N -0.36 -3.45 3.64 -52.78 -0.19 -3.65 16 6 C 0.15 1.28 4.16 -65.78 -0.27 1.00 16 7 H 0.12 1.02 8.14 -51.93 -0.42 0.59 16 8 C -0.14 -0.83 6.38 -24.89 -0.16 -0.99 16 9 C 0.12 0.96 6.89 -3.06 -0.02 0.94 16 10 N -1.02 -10.77 3.62 -111.42 -0.40 -11.17 16 11 S 2.61 37.50 5.65 -107.50 -0.61 36.89 16 12 O -0.95 -16.54 17.28 -57.54 -0.99 -17.53 16 13 O -0.95 -16.05 17.60 -57.54 -1.01 -17.06 16 14 C -0.61 -9.03 6.18 37.15 0.23 -8.80 16 15 C -0.11 -2.12 5.16 -26.73 -0.14 -2.26 16 16 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 17 C -0.53 -14.74 9.11 -34.44 -0.31 -15.05 16 18 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.90 -26.41 13.29 55.43 0.74 -25.67 16 21 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 25 C 0.11 1.06 6.76 -2.53 -0.02 1.04 16 26 C 0.06 0.45 10.48 -17.22 -0.18 0.27 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.33 8.14 -51.92 -0.42 -0.10 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.18 1.13 8.06 -52.49 -0.42 0.70 16 31 H 0.09 0.42 6.38 -51.93 -0.33 0.09 16 32 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.13 1.67 8.14 -51.92 -0.42 1.25 16 36 H 0.13 1.72 8.14 -51.92 -0.42 1.30 16 37 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 38 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.10 1.06 7.67 -51.93 -0.40 0.66 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.17 0.93 6.98 -52.48 -0.37 0.57 16 LS Contribution 377.62 15.07 5.69 5.69 Total: -1.00 -36.14 377.62 -9.98 -46.12 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -6.98 Total: -3.07 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: -1.58 Total: -24.11 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: 0.53 Total: -43.38 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -2.01 Total: -34.60 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 37.50 SS G_CDS: -0.61 Total: 36.89 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.14 -9.98 -46.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377726816.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.943 kcal (2) G-P(sol) polarization free energy of solvation -36.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds