Wall clock time and date at job start Tue Mar 31 2020 15:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39874 * 126.03998 * 2 1 4 4 N 1.30840 * 108.19904 * 179.73666 * 3 2 1 5 5 N 1.40083 * 108.20752 * 0.40356 * 4 3 2 6 6 C 1.46496 * 126.03727 * 179.85248 * 5 4 3 7 7 H 1.09001 * 110.92089 * 22.24468 * 6 5 4 8 8 C 1.55165 * 111.00397 * 146.14449 * 6 5 4 9 9 C 1.54327 * 102.94078 * 153.57581 * 8 6 5 10 10 N 1.47022 * 107.27336 * 337.80587 * 9 8 6 11 11 S 1.65597 * 125.64521 * 178.90565 * 10 9 8 12 12 O 1.42110 * 104.27280 * 206.09739 * 11 10 9 13 13 O 1.42100 * 104.27744 * 333.95092 * 11 10 9 14 14 C 1.81393 * 104.45073 * 90.02745 * 11 10 9 15 15 C 1.52993 * 109.47369 * 179.97438 * 14 11 10 16 16 C 1.52999 * 109.47548 * 180.02562 * 15 14 11 17 17 C 1.50701 * 109.47646 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99487 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00220 * 180.02562 * 17 16 15 20 20 N 1.31518 * 120.00202 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00096 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47283 * 89.99566 * 21 19 17 23 23 H 1.48502 * 109.47206 * 209.99737 * 21 19 17 24 24 H 1.48503 * 109.46691 * 329.99574 * 21 19 17 25 25 C 1.47425 * 108.70334 * 358.94217 * 10 9 8 26 26 C 1.34945 * 107.92440 * 359.59111 * 5 4 3 27 27 H 1.08999 * 109.47326 * 270.00560 * 1 2 3 28 28 H 1.09009 * 109.46885 * 30.00326 * 1 2 3 29 29 H 1.08999 * 109.47496 * 149.99630 * 1 2 3 30 30 H 1.07997 * 125.90204 * 359.97438 * 3 2 1 31 31 H 1.08993 * 110.71917 * 35.21311 * 8 6 5 32 32 H 1.09002 * 110.71751 * 271.93883 * 8 6 5 33 33 H 1.08997 * 109.87800 * 97.22770 * 9 8 6 34 34 H 1.08998 * 109.87662 * 218.38556 * 9 8 6 35 35 H 1.09002 * 109.47327 * 300.00127 * 14 11 10 36 36 H 1.09005 * 109.47646 * 59.99546 * 14 11 10 37 37 H 1.09001 * 109.47195 * 299.99833 * 15 14 11 38 38 H 1.08998 * 109.47262 * 59.99596 * 15 14 11 39 39 H 1.09001 * 109.46712 * 300.00099 * 16 15 14 40 40 H 1.08998 * 109.47193 * 59.99524 * 16 15 14 41 41 H 0.96990 * 120.00354 * 180.02562 * 20 19 17 42 42 H 1.08997 * 110.36855 * 142.96531 * 25 10 9 43 43 H 1.08997 * 110.36655 * 265.29403 * 25 10 9 44 44 H 1.08003 * 126.12952 * 180.26427 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7302 0.0057 5 7 3.5844 -0.6706 0.0002 6 6 4.7745 -1.5249 0.0007 7 1 5.6389 -0.9878 0.3911 8 6 4.5222 -2.8296 0.8017 9 6 5.5066 -3.8274 0.1559 10 7 5.8194 -3.3233 -1.1894 11 16 6.8543 -4.0336 -2.2696 12 8 7.3020 -2.9588 -3.0844 13 8 7.7623 -4.7641 -1.4566 14 6 5.8053 -5.1631 -3.2258 15 6 6.6561 -5.8876 -4.2707 16 6 5.7712 -6.8399 -5.0777 17 6 6.6093 -7.5541 -6.1066 18 1 7.6672 -7.3489 -6.1781 19 6 6.0254 -8.4685 -6.9573 20 7 4.7370 -8.7180 -6.8705 21 14 7.0641 -9.3532 -8.2331 22 1 7.5994 -10.6099 -7.6507 23 1 6.2271 -9.6736 -9.4172 24 1 8.1916 -8.4792 -8.6458 25 6 5.0599 -2.0805 -1.4170 26 6 2.3031 -1.0942 0.0001 27 1 -0.3634 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3634 -0.8899 -0.5139 30 1 1.9951 2.1578 -0.0004 31 1 3.4934 -3.1666 0.6756 32 1 4.7556 -2.6857 1.8566 33 1 6.4180 -3.8865 0.7508 34 1 5.0434 -4.8115 0.0847 35 1 5.3525 -5.8937 -2.5554 36 1 5.0214 -4.5949 -3.7265 37 1 7.1084 -5.1568 -4.9411 38 1 7.4402 -6.4559 -3.7704 39 1 5.3185 -7.5707 -4.4076 40 1 4.9874 -6.2713 -5.5781 41 1 4.3262 -9.3616 -7.4687 42 1 5.6567 -1.3706 -1.9896 43 1 4.1254 -2.2964 -1.9349 44 1 1.9723 -2.1223 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377726816.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:51 Heat of formation + Delta-G solvation = -26.054983 kcal Electronic energy + Delta-G solvation = -25392.520092 eV Core-core repulsion = 21665.459489 eV Total energy + Delta-G solvation = -3727.060603 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.24955 -39.51332 -38.30678 -37.14823 -36.49939 -34.33329 -34.19002 -32.59631 -30.92883 -29.76914 -29.63922 -27.10300 -25.66482 -24.05438 -23.15944 -22.30686 -21.49027 -20.90099 -20.07452 -18.96009 -18.62109 -17.96029 -17.34202 -17.09280 -16.59448 -16.45331 -15.86146 -15.83924 -15.17554 -14.83845 -14.72616 -14.50554 -14.46889 -14.10363 -14.08432 -13.74218 -13.57351 -13.56179 -13.34261 -13.25947 -13.07803 -13.00010 -12.77557 -12.69741 -12.66146 -12.60063 -12.48082 -12.19001 -11.92189 -11.78046 -11.46629 -11.40980 -11.14440 -10.59187 -10.39683 -10.09788 -9.21977 -8.24584 -6.35559 -0.91369 0.94285 1.32148 1.39299 1.39819 1.51198 1.72287 1.90158 2.38362 2.72090 2.93048 3.09099 3.28485 3.34377 3.69246 3.78199 3.84513 3.92325 4.00643 4.12131 4.20817 4.34750 4.39253 4.50443 4.59067 4.61300 4.64680 4.69009 4.82394 4.87254 4.93620 4.95471 5.03134 5.05076 5.07000 5.23529 5.30853 5.36570 5.43064 5.60191 5.77294 5.79369 6.14397 6.17562 6.77772 6.79944 7.33914 8.86917 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.017150 B = 0.002499 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.231208 B =11201.046552 C =12156.010646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.253 4.253 3 C 0.042 3.958 4 N -0.336 5.336 5 N -0.369 5.369 6 C 0.153 3.847 7 H 0.115 0.885 8 C -0.123 4.123 9 C 0.110 3.890 10 N -1.011 6.011 11 S 2.642 3.358 12 O -0.987 6.987 13 O -0.977 6.977 14 C -0.605 4.605 15 C -0.107 4.107 16 C 0.032 3.968 17 C -0.553 4.553 18 H 0.060 0.940 19 C 0.003 3.997 20 N -0.929 5.929 21 Si 0.962 3.038 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.266 1.266 25 C 0.105 3.895 26 C 0.053 3.947 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.201 0.799 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.150 0.850 36 H 0.142 0.858 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.005 0.995 40 H 0.002 0.998 41 H 0.265 0.735 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.732 15.583 19.538 26.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.264 4.264 3 C -0.144 4.144 4 N -0.157 5.157 5 N -0.151 5.151 6 C 0.048 3.952 7 H 0.133 0.867 8 C -0.162 4.162 9 C -0.015 4.015 10 N -0.850 5.850 11 S 2.740 3.260 12 O -0.978 6.978 13 O -0.968 6.968 14 C -0.736 4.736 15 C -0.147 4.147 16 C -0.006 4.006 17 C -0.591 4.591 18 H 0.078 0.922 19 C -0.195 4.195 20 N -0.569 5.569 21 Si 0.787 3.213 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.190 1.190 25 C -0.022 4.022 26 C -0.092 4.092 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.217 0.783 31 H 0.126 0.874 32 H 0.131 0.869 33 H 0.099 0.901 34 H 0.115 0.885 35 H 0.168 0.832 36 H 0.160 0.840 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.024 0.976 40 H 0.021 0.979 41 H 0.074 0.926 42 H 0.096 0.904 43 H 0.104 0.896 44 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -6.507 15.917 19.371 25.902 hybrid contribution -0.922 -0.984 -1.152 1.773 sum -7.429 14.933 18.219 24.701 Atomic orbital electron populations 1.20085 0.87630 1.02890 1.02161 1.20535 0.98388 0.91592 1.15930 1.24293 0.89652 1.01250 0.99175 1.77348 1.22674 0.89824 1.25823 1.48475 1.05489 1.04048 1.57116 1.22382 0.86281 0.90639 0.95878 0.86729 1.23086 1.01648 0.90632 1.00848 1.22023 0.99873 0.98697 0.80871 1.58398 1.63332 1.35314 1.27929 1.03990 0.74310 0.74298 0.73404 1.93531 1.79776 1.53786 1.70666 1.93534 1.60864 1.74858 1.67525 1.30515 1.14918 1.15773 1.12379 1.21329 0.98218 0.98895 0.96235 1.18954 0.94431 0.93364 0.93896 1.21736 0.95795 1.23615 1.17967 0.92212 1.25924 0.96242 0.97637 0.99706 1.70060 1.11763 1.35372 1.39728 0.85487 0.78652 0.78922 0.78272 1.19605 1.20522 1.19011 1.22411 0.97077 0.85284 0.97419 1.22807 0.83565 1.01534 1.01251 0.91411 0.91335 0.91416 0.78256 0.87438 0.86916 0.90052 0.88533 0.83211 0.83956 0.91765 0.91320 0.97640 0.97947 0.92587 0.90412 0.89563 0.78284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.37 71.23 0.74 0.08 16 2 C -0.25 -3.72 6.10 -20.14 -0.12 -3.84 16 3 C 0.04 0.73 11.96 85.24 1.02 1.75 16 4 N -0.34 -7.40 12.58 -57.02 -0.72 -8.12 16 5 N -0.37 -6.51 3.64 -320.89 -1.17 -7.68 16 6 C 0.15 2.33 4.16 46.39 0.19 2.52 16 7 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 8 C -0.12 -1.11 6.38 31.79 0.20 -0.90 16 9 C 0.11 1.46 6.89 86.73 0.60 2.06 16 10 N -1.01 -19.93 3.62 -506.42 -1.83 -21.76 16 11 S 2.64 74.00 5.65 -56.49 -0.32 73.68 16 12 O -0.99 -34.35 17.28 -127.65 -2.21 -36.55 16 13 O -0.98 -32.19 17.60 -127.65 -2.25 -34.44 16 14 C -0.60 -17.44 6.18 71.98 0.44 -16.99 16 15 C -0.11 -4.29 5.16 30.59 0.16 -4.14 16 16 C 0.03 1.62 4.97 29.85 0.15 1.77 16 17 C -0.55 -31.26 9.11 25.60 0.23 -31.03 16 18 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 19 C 0.00 0.18 5.46 84.65 0.46 0.65 16 20 N -0.93 -55.26 13.29 21.45 0.28 -54.98 16 21 Si 0.96 43.93 29.54 68.60 2.03 45.96 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 24 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 25 C 0.10 1.94 6.76 86.86 0.59 2.53 16 26 C 0.05 0.74 10.48 83.54 0.88 1.62 16 27 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 29 H 0.07 0.55 8.14 -2.39 -0.02 0.54 16 30 H 0.20 2.31 8.06 -2.91 -0.02 2.28 16 31 H 0.11 0.58 6.38 -2.39 -0.02 0.57 16 32 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.15 3.64 8.14 -2.39 -0.02 3.62 16 36 H 0.14 3.67 8.14 -2.39 -0.02 3.65 16 37 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 39 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 40 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 41 H 0.27 14.78 8.31 -92.72 -0.77 14.01 16 42 H 0.08 1.73 7.67 -2.39 -0.02 1.71 16 43 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.20 1.45 6.98 -2.91 -0.02 1.43 16 Total: -1.00 -78.56 377.62 0.34 -78.23 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 0.98 Total: 9.60 kcal Atomic # 6 Polarization: -49.48 SS G_CDS: 5.54 Total: -43.94 kcal Atomic # 7 Polarization: -89.10 SS G_CDS: -3.44 Total: -92.54 kcal Atomic # 8 Polarization: -66.54 SS G_CDS: -4.45 Total: -70.99 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: 74.00 SS G_CDS: -0.32 Total: 73.68 kcal Total: -78.56 0.34 -78.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377726816.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.174 kcal (2) G-P(sol) polarization free energy of solvation -78.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds