Wall clock time and date at job start Tue Mar 31 2020 15:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30839 * 125.89927 * 2 1 4 4 N 1.40090 * 108.20228 * 179.97438 * 3 2 1 5 5 C 1.46502 * 126.03412 * 180.02562 * 4 3 2 6 6 C 1.34949 * 107.92907 * 359.76129 * 4 3 2 7 7 C 1.50697 * 126.13010 * 180.23706 * 6 4 3 8 8 C 1.35322 * 107.73932 * 0.38947 * 6 4 3 9 9 S 1.76204 * 126.03468 * 179.87438 * 8 6 4 10 10 O 1.42095 * 106.40424 * 156.17300 * 9 8 6 11 11 O 1.42104 * 106.40413 * 23.25183 * 9 8 6 12 12 N 1.65597 * 107.21669 * 269.71442 * 9 8 6 13 13 C 1.46927 * 120.63280 * 90.00168 * 12 9 8 14 14 C 1.53196 * 108.77413 * 233.60597 * 13 12 9 15 15 C 1.53031 * 109.31477 * 305.36304 * 14 13 12 16 16 C 1.53046 * 109.53726 * 61.36734 * 15 14 13 17 17 H 1.08990 * 109.49711 * 58.58414 * 16 15 14 18 18 C 1.50699 * 109.49523 * 178.68451 * 16 15 14 19 19 H 1.08003 * 119.99931 * 120.00228 * 18 16 15 20 20 C 1.37875 * 120.00042 * 299.99617 * 18 16 15 21 21 N 1.31518 * 120.00123 * 180.02562 * 20 18 16 22 22 Si 1.86796 * 120.00194 * 0.02562 * 20 18 16 23 23 H 1.48504 * 109.46992 * 90.00058 * 22 20 18 24 24 H 1.48493 * 109.47442 * 210.00002 * 22 20 18 25 25 H 1.48505 * 109.47258 * 330.00331 * 22 20 18 26 26 C 1.46923 * 120.63166 * 269.99858 * 12 9 8 27 27 H 1.08999 * 109.46940 * 270.02225 * 1 2 3 28 28 H 1.09000 * 109.46842 * 30.02053 * 1 2 3 29 29 H 1.08997 * 109.46975 * 150.01913 * 1 2 3 30 30 H 1.08995 * 109.47133 * 89.97621 * 5 4 3 31 31 H 1.09000 * 109.46994 * 209.97584 * 5 4 3 32 32 H 1.08999 * 109.47307 * 329.97800 * 5 4 3 33 33 H 1.08999 * 109.47176 * 270.18421 * 7 6 4 34 34 H 1.09006 * 109.46854 * 30.17660 * 7 6 4 35 35 H 1.09000 * 109.47053 * 150.17732 * 7 6 4 36 36 H 1.08993 * 109.58956 * 113.82039 * 13 12 9 37 37 H 1.08998 * 109.58709 * 353.39377 * 13 12 9 38 38 H 1.09004 * 109.49841 * 185.40709 * 14 13 12 39 39 H 1.09000 * 109.49679 * 65.31895 * 14 13 12 40 40 H 1.08995 * 109.46212 * 301.34533 * 15 14 13 41 41 H 1.09006 * 109.46201 * 181.38399 * 15 14 13 42 42 H 0.96999 * 120.00219 * 180.02562 * 21 20 18 43 43 H 1.09009 * 109.58590 * 6.60754 * 26 12 9 44 44 H 1.08995 * 109.59117 * 246.17987 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6340 0.0006 5 6 4.7900 1.5007 0.0013 6 6 3.6143 -0.7155 0.0063 7 6 4.8350 -1.5990 0.0140 8 6 2.3271 -1.1330 0.0005 9 16 1.7808 -2.8082 0.0012 10 8 0.4680 -2.8020 0.5450 11 8 2.8443 -3.5769 0.5465 12 7 1.6296 -3.2751 -1.5804 13 6 2.7631 -3.8782 -2.2946 14 6 3.0050 -3.0933 -3.5878 15 6 1.7079 -3.0407 -4.3981 16 6 0.6281 -2.3181 -3.5893 17 1 0.9685 -1.3118 -3.3456 18 6 -0.6393 -2.2384 -4.4008 19 1 -1.5467 -2.6926 -4.0311 20 6 -0.6404 -1.5854 -5.6151 21 7 -1.7465 -1.5154 -6.3231 22 14 0.9292 -0.8002 -6.2549 23 1 1.6814 -1.7891 -7.0683 24 1 0.5876 0.3750 -7.0958 25 1 1.7664 -0.3625 -5.1091 26 6 0.3593 -3.0942 -2.2962 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8901 -0.5135 30 1 5.0821 1.7158 1.0291 31 1 5.6098 0.9980 -0.5118 32 1 4.5568 2.4331 -0.5128 33 1 5.1346 -1.8137 -1.0118 34 1 5.6486 -1.0902 0.5311 35 1 4.6049 -2.5321 0.5282 36 1 2.5332 -4.9162 -2.5348 37 1 3.6544 -3.8346 -1.6686 38 1 3.7802 -3.5873 -4.1737 39 1 3.3231 -2.0797 -3.3441 40 1 1.3771 -4.0552 -4.6203 41 1 1.8835 -2.5038 -5.3304 42 1 -1.7472 -1.0564 -7.1776 43 1 -0.3357 -2.5333 -1.6711 44 1 -0.0667 -4.0683 -2.5365 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397811069.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:38 Heat of formation + Delta-G solvation = -0.300195 kcal Electronic energy + Delta-G solvation = -28123.324245 eV Core-core repulsion = 24397.380453 eV Total energy + Delta-G solvation = -3725.943792 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.41607 -38.02007 -37.07123 -35.55087 -34.28577 -33.28455 -32.32558 -31.55227 -30.56443 -29.55852 -27.38053 -25.63774 -25.15071 -24.05784 -21.62236 -21.27781 -19.73151 -19.58477 -18.43296 -17.62740 -16.93216 -16.67379 -15.92733 -15.77247 -15.39554 -14.84549 -14.21244 -13.98236 -13.71224 -13.67616 -13.62006 -13.44061 -13.22673 -13.10367 -12.80879 -12.79117 -12.68521 -12.47651 -12.05694 -11.99226 -11.87347 -11.63925 -11.53320 -11.25455 -11.18699 -11.12742 -10.64509 -10.46420 -10.26348 -10.17851 -9.85591 -9.46604 -9.18246 -9.07593 -9.01653 -8.58306 -8.38049 -6.10688 -4.10254 0.76921 1.51294 2.29008 2.36158 3.22021 3.34194 3.35892 3.39239 4.06816 4.23380 4.27532 4.37199 4.55094 4.82854 4.83233 4.95951 5.05708 5.11301 5.21742 5.22711 5.29910 5.37322 5.52299 5.62621 5.75018 5.78794 5.86437 5.98053 6.01830 6.04461 6.07785 6.18332 6.38621 6.41241 6.51077 6.61055 6.72809 6.77189 6.83368 6.98328 7.12514 7.47400 7.51921 7.73541 8.46394 8.93556 9.51643 11.02240 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012962 B = 0.005701 C = 0.005237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.648386 B = 4909.937418 C = 5345.796377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.172 3.828 3 N -0.299 5.299 4 N -0.366 5.366 5 C 0.094 3.906 6 C 0.206 3.794 7 C -0.136 4.136 8 C -0.815 4.815 9 S 2.721 3.279 10 O -0.957 6.957 11 O -0.974 6.974 12 N -0.995 5.995 13 C 0.128 3.872 14 C -0.139 4.139 15 C -0.119 4.119 16 C 0.004 3.996 17 H 0.030 0.970 18 C -0.513 4.513 19 H 0.078 0.922 20 C 0.073 3.927 21 N -0.898 5.898 22 Si 0.886 3.114 23 H -0.279 1.279 24 H -0.299 1.299 25 H -0.268 1.268 26 C 0.136 3.864 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.126 0.874 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.063 0.937 41 H 0.047 0.953 42 H 0.264 0.736 43 H 0.083 0.917 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.153 0.941 11.919 19.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.003 3.997 3 N -0.120 5.120 4 N -0.144 5.144 5 C -0.047 4.047 6 C 0.072 3.928 7 C -0.194 4.194 8 C -0.913 4.913 9 S 2.810 3.190 10 O -0.947 6.947 11 O -0.964 6.964 12 N -0.834 5.834 13 C 0.002 3.998 14 C -0.178 4.178 15 C -0.157 4.157 16 C -0.016 4.016 17 H 0.048 0.952 18 C -0.552 4.552 19 H 0.097 0.903 20 C -0.129 4.129 21 N -0.536 5.536 22 Si 0.716 3.284 23 H -0.207 1.207 24 H -0.227 1.227 25 H -0.193 1.193 26 C 0.013 3.987 27 H 0.107 0.893 28 H 0.100 0.900 29 H 0.114 0.886 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.098 0.902 35 H 0.144 0.856 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.102 0.898 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 15.077 1.944 12.496 19.678 hybrid contribution 1.213 0.603 -1.051 1.715 sum 16.290 2.547 11.445 20.071 Atomic orbital electron populations 1.20569 0.85198 1.05095 1.04134 1.21912 0.96906 0.88278 0.92634 1.77397 0.85590 1.22120 1.26854 1.48888 1.06286 1.04223 1.54976 1.21955 0.83857 0.95317 1.03621 1.20902 0.95631 0.84770 0.91500 1.21203 0.92603 1.00507 1.05042 1.31373 0.99742 1.25024 1.35146 1.00926 0.73152 0.72576 0.72384 1.93544 1.37589 1.87051 1.76494 1.93439 1.57311 1.68610 1.77064 1.57736 1.20005 1.74838 1.30835 1.21346 0.87614 0.97176 0.93632 1.22005 0.99270 0.99926 0.96564 1.21922 0.94187 1.01617 0.97956 1.19475 0.95225 0.94684 0.92257 0.95241 1.20939 0.95139 1.35786 1.03323 0.90348 1.24957 0.95770 0.95491 0.96641 1.69889 1.26792 1.43266 1.13636 0.86876 0.84156 0.78412 0.78908 1.20662 1.22682 1.19279 1.21633 0.81572 1.01259 0.94251 0.89341 0.89979 0.88618 0.90363 0.89195 0.88763 0.88841 0.90154 0.85600 0.90929 0.90327 0.91937 0.92578 0.91783 0.93496 0.92644 0.89834 0.91046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.43 9.54 36.01 0.34 -1.09 16 2 C 0.17 2.93 7.21 -82.41 -0.59 2.33 16 3 N -0.30 -5.01 12.58 33.67 0.42 -4.59 16 4 N -0.37 -5.01 4.01 -63.88 -0.26 -5.27 16 5 C 0.09 0.77 11.09 59.85 0.66 1.44 16 6 C 0.21 2.85 6.92 -82.26 -0.57 2.28 16 7 C -0.14 -1.33 9.57 36.00 0.34 -0.99 16 8 C -0.82 -13.14 6.17 -40.01 -0.25 -13.39 16 9 S 2.72 44.61 5.66 -107.50 -0.61 44.00 16 10 O -0.96 -17.60 14.63 -57.17 -0.84 -18.44 16 11 O -0.97 -15.76 13.96 -57.17 -0.80 -16.55 16 12 N -1.00 -16.47 3.29 -113.52 -0.37 -16.84 16 13 C 0.13 1.83 6.38 -3.71 -0.02 1.80 16 14 C -0.14 -2.17 6.08 -26.61 -0.16 -2.33 16 15 C -0.12 -2.39 4.66 -26.69 -0.12 -2.51 16 16 C 0.00 0.09 1.84 -91.65 -0.17 -0.08 16 17 H 0.03 0.69 7.21 -51.93 -0.37 0.32 16 18 C -0.51 -13.66 9.15 -34.44 -0.31 -13.98 16 19 H 0.08 2.24 7.99 -52.48 -0.42 1.82 16 20 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 21 N -0.90 -26.78 13.96 55.43 0.77 -26.01 16 22 Si 0.89 21.61 24.39 -169.99 -4.15 17.46 16 23 H -0.28 -6.60 6.86 56.52 0.39 -6.21 16 24 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 25 H -0.27 -6.34 6.53 56.52 0.37 -5.97 16 26 C 0.14 2.60 5.60 -3.71 -0.02 2.58 16 27 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.10 1.57 5.42 -51.93 -0.28 1.29 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.09 0.50 7.67 -51.93 -0.40 0.11 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.54 7.74 -51.93 -0.40 0.14 16 35 H 0.13 1.37 5.54 -51.93 -0.29 1.09 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.08 0.94 7.13 -51.93 -0.37 0.57 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.05 1.02 3.25 -51.93 -0.17 0.85 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.08 1.58 5.67 -51.92 -0.29 1.29 16 44 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 349.96 15.07 5.27 5.27 Total: -1.00 -34.21 349.96 -7.92 -42.14 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -6.41 Total: 0.80 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: -0.97 Total: -21.99 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: 0.57 Total: -52.70 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: -1.63 Total: -34.99 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.15 Total: 17.46 kcal Atomic # 16 Polarization: 44.61 SS G_CDS: -0.61 Total: 44.00 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.21 -7.92 -42.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397811069.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.836 kcal (2) G-P(sol) polarization free energy of solvation -34.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds