Wall clock time and date at job start Tue Mar 31 2020 15:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30839 * 125.89927 * 2 1 4 4 N 1.40090 * 108.20228 * 179.97438 * 3 2 1 5 5 C 1.46502 * 126.03412 * 180.02562 * 4 3 2 6 6 C 1.34949 * 107.92907 * 359.76129 * 4 3 2 7 7 C 1.50697 * 126.13010 * 180.23706 * 6 4 3 8 8 C 1.35322 * 107.73932 * 0.38947 * 6 4 3 9 9 S 1.76204 * 126.03468 * 179.87438 * 8 6 4 10 10 O 1.42095 * 106.40424 * 156.17300 * 9 8 6 11 11 O 1.42104 * 106.40413 * 23.25183 * 9 8 6 12 12 N 1.65597 * 107.21669 * 269.71442 * 9 8 6 13 13 C 1.46927 * 120.63280 * 90.00168 * 12 9 8 14 14 C 1.53196 * 108.77413 * 233.60597 * 13 12 9 15 15 C 1.53031 * 109.31477 * 305.36304 * 14 13 12 16 16 C 1.53046 * 109.53726 * 61.36734 * 15 14 13 17 17 H 1.08990 * 109.49711 * 58.58414 * 16 15 14 18 18 C 1.50699 * 109.49523 * 178.68451 * 16 15 14 19 19 H 1.08003 * 119.99931 * 120.00228 * 18 16 15 20 20 C 1.37875 * 120.00042 * 299.99617 * 18 16 15 21 21 N 1.31518 * 120.00123 * 180.02562 * 20 18 16 22 22 Si 1.86796 * 120.00194 * 0.02562 * 20 18 16 23 23 H 1.48504 * 109.46992 * 90.00058 * 22 20 18 24 24 H 1.48493 * 109.47442 * 210.00002 * 22 20 18 25 25 H 1.48505 * 109.47258 * 330.00331 * 22 20 18 26 26 C 1.46923 * 120.63166 * 269.99858 * 12 9 8 27 27 H 1.08999 * 109.46940 * 270.02225 * 1 2 3 28 28 H 1.09000 * 109.46842 * 30.02053 * 1 2 3 29 29 H 1.08997 * 109.46975 * 150.01913 * 1 2 3 30 30 H 1.08995 * 109.47133 * 89.97621 * 5 4 3 31 31 H 1.09000 * 109.46994 * 209.97584 * 5 4 3 32 32 H 1.08999 * 109.47307 * 329.97800 * 5 4 3 33 33 H 1.08999 * 109.47176 * 270.18421 * 7 6 4 34 34 H 1.09006 * 109.46854 * 30.17660 * 7 6 4 35 35 H 1.09000 * 109.47053 * 150.17732 * 7 6 4 36 36 H 1.08993 * 109.58956 * 113.82039 * 13 12 9 37 37 H 1.08998 * 109.58709 * 353.39377 * 13 12 9 38 38 H 1.09004 * 109.49841 * 185.40709 * 14 13 12 39 39 H 1.09000 * 109.49679 * 65.31895 * 14 13 12 40 40 H 1.08995 * 109.46212 * 301.34533 * 15 14 13 41 41 H 1.09006 * 109.46201 * 181.38399 * 15 14 13 42 42 H 0.96999 * 120.00219 * 180.02562 * 21 20 18 43 43 H 1.09009 * 109.58590 * 6.60754 * 26 12 9 44 44 H 1.08995 * 109.59117 * 246.17987 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6340 0.0006 5 6 4.7900 1.5007 0.0013 6 6 3.6143 -0.7155 0.0063 7 6 4.8350 -1.5990 0.0140 8 6 2.3271 -1.1330 0.0005 9 16 1.7808 -2.8082 0.0012 10 8 0.4680 -2.8020 0.5450 11 8 2.8443 -3.5769 0.5465 12 7 1.6296 -3.2751 -1.5804 13 6 2.7631 -3.8782 -2.2946 14 6 3.0050 -3.0933 -3.5878 15 6 1.7079 -3.0407 -4.3981 16 6 0.6281 -2.3181 -3.5893 17 1 0.9685 -1.3118 -3.3456 18 6 -0.6393 -2.2384 -4.4008 19 1 -1.5467 -2.6926 -4.0311 20 6 -0.6404 -1.5854 -5.6151 21 7 -1.7465 -1.5154 -6.3231 22 14 0.9292 -0.8002 -6.2549 23 1 1.6814 -1.7891 -7.0683 24 1 0.5876 0.3750 -7.0958 25 1 1.7664 -0.3625 -5.1091 26 6 0.3593 -3.0942 -2.2962 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8901 -0.5135 30 1 5.0821 1.7158 1.0291 31 1 5.6098 0.9980 -0.5118 32 1 4.5568 2.4331 -0.5128 33 1 5.1346 -1.8137 -1.0118 34 1 5.6486 -1.0902 0.5311 35 1 4.6049 -2.5321 0.5282 36 1 2.5332 -4.9162 -2.5348 37 1 3.6544 -3.8346 -1.6686 38 1 3.7802 -3.5873 -4.1737 39 1 3.3231 -2.0797 -3.3441 40 1 1.3771 -4.0552 -4.6203 41 1 1.8835 -2.5038 -5.3304 42 1 -1.7472 -1.0564 -7.1776 43 1 -0.3357 -2.5333 -1.6711 44 1 -0.0667 -4.0683 -2.5365 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397811069.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:37 Heat of formation + Delta-G solvation = -25.476089 kcal Electronic energy + Delta-G solvation = -28124.415954 eV Core-core repulsion = 24397.380453 eV Total energy + Delta-G solvation = -3727.035500 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.47982 -39.47137 -38.36518 -36.86368 -35.29370 -35.14909 -33.25929 -33.15264 -32.16231 -30.59025 -28.31582 -27.01819 -26.54974 -25.47947 -23.12291 -22.42214 -21.11665 -20.77393 -19.75612 -19.02084 -18.52030 -18.09121 -16.94068 -16.92483 -16.70122 -16.54108 -15.48638 -15.38489 -15.07104 -14.88536 -14.69097 -14.57021 -14.50939 -14.32841 -14.16425 -14.05064 -13.71249 -13.53880 -13.29743 -13.20976 -13.15647 -12.95119 -12.84140 -12.73569 -12.62538 -12.33856 -12.26084 -12.01123 -11.82813 -11.63971 -11.45356 -11.15188 -10.90374 -10.65204 -10.26338 -10.17101 -9.77420 -8.27357 -6.29996 -0.47886 0.49720 1.11844 1.27179 1.34376 1.41983 1.43526 2.14046 2.32451 2.84079 3.08456 3.14430 3.38968 3.57012 3.83295 3.87370 4.10334 4.12988 4.21583 4.29884 4.30935 4.43609 4.47180 4.53935 4.60534 4.62827 4.65621 4.69814 4.78559 4.86153 4.90992 5.02591 5.05310 5.08371 5.14046 5.23820 5.29450 5.38063 5.50406 5.61990 5.73538 5.83519 5.88354 6.33331 6.39373 6.77691 7.35027 8.89111 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012962 B = 0.005701 C = 0.005237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.648386 B = 4909.937418 C = 5345.796377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.151 3.849 3 N -0.329 5.329 4 N -0.364 5.364 5 C 0.079 3.921 6 C 0.213 3.787 7 C -0.138 4.138 8 C -0.841 4.841 9 S 2.733 3.267 10 O -0.985 6.985 11 O -0.969 6.969 12 N -0.996 5.996 13 C 0.118 3.882 14 C -0.131 4.131 15 C -0.122 4.122 16 C 0.006 3.994 17 H 0.017 0.983 18 C -0.513 4.513 19 H 0.042 0.958 20 C 0.016 3.984 21 N -0.948 5.948 22 Si 0.947 3.053 23 H -0.262 1.262 24 H -0.307 1.307 25 H -0.256 1.256 26 C 0.145 3.855 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.124 0.876 32 H 0.094 0.906 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.088 0.912 37 H 0.111 0.889 38 H 0.098 0.902 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.032 0.968 42 H 0.264 0.736 43 H 0.074 0.926 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.639 0.690 12.581 23.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.018 4.018 3 N -0.150 5.150 4 N -0.141 5.141 5 C -0.060 4.060 6 C 0.077 3.923 7 C -0.196 4.196 8 C -0.940 4.940 9 S 2.824 3.176 10 O -0.976 6.976 11 O -0.960 6.960 12 N -0.834 5.834 13 C -0.006 4.006 14 C -0.170 4.170 15 C -0.160 4.160 16 C -0.014 4.014 17 H 0.035 0.965 18 C -0.551 4.551 19 H 0.060 0.940 20 C -0.181 4.181 21 N -0.588 5.588 22 Si 0.775 3.225 23 H -0.188 1.188 24 H -0.235 1.235 25 H -0.180 1.180 26 C 0.020 3.980 27 H 0.119 0.881 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.118 0.882 31 H 0.142 0.858 32 H 0.113 0.887 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.106 0.894 37 H 0.129 0.871 38 H 0.117 0.883 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.050 0.950 42 H 0.073 0.927 43 H 0.093 0.907 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 19.593 1.673 13.178 23.672 hybrid contribution -0.184 0.704 -1.174 1.381 sum 19.409 2.378 12.004 22.944 Atomic orbital electron populations 1.20575 0.85595 1.04388 1.04761 1.22052 0.97250 0.89051 0.93448 1.77291 0.87433 1.22638 1.27596 1.49262 1.06257 1.04961 1.53666 1.22459 0.82765 0.95137 1.05629 1.21495 0.96121 0.85215 0.89463 1.21422 0.91761 0.99527 1.06853 1.31280 1.01022 1.24203 1.37530 1.00408 0.72559 0.72646 0.72017 1.93506 1.39336 1.87584 1.77139 1.93441 1.56797 1.68867 1.76867 1.57683 1.19683 1.75214 1.30812 1.21678 0.87877 0.97577 0.93455 1.21968 0.97447 1.00769 0.96815 1.21842 0.95799 1.00838 0.97514 1.19370 0.93821 0.94947 0.93277 0.96471 1.21280 0.96061 1.34282 1.03508 0.93955 1.25752 0.98837 0.96378 0.97116 1.70041 1.29232 1.45175 1.14372 0.85880 0.80589 0.77427 0.78600 1.18795 1.23509 1.18007 1.21301 0.82965 1.00605 0.93129 0.88141 0.89807 0.90113 0.88215 0.85779 0.88733 0.86534 0.86556 0.86508 0.89406 0.87110 0.88346 0.92595 0.91711 0.95005 0.92720 0.90731 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.08 9.54 71.24 0.68 -2.40 16 2 C 0.15 5.12 7.21 43.10 0.31 5.43 16 3 N -0.33 -10.72 12.58 -47.38 -0.60 -11.32 16 4 N -0.36 -8.97 4.01 -356.03 -1.43 -10.39 16 5 C 0.08 1.00 11.09 127.77 1.42 2.41 16 6 C 0.21 5.22 6.92 41.41 0.29 5.51 16 7 C -0.14 -2.03 9.57 71.23 0.68 -1.35 16 8 C -0.84 -25.98 6.17 21.99 0.14 -25.84 16 9 S 2.73 86.28 5.66 -56.49 -0.32 85.96 16 10 O -0.99 -36.66 14.63 -128.00 -1.87 -38.53 16 11 O -0.97 -28.85 13.96 -128.00 -1.79 -30.64 16 12 N -1.00 -31.34 3.29 -513.07 -1.69 -33.03 16 13 C 0.12 2.94 6.38 86.36 0.55 3.49 16 14 C -0.13 -3.58 6.08 30.67 0.19 -3.39 16 15 C -0.12 -4.66 4.66 30.62 0.14 -4.51 16 16 C 0.01 0.27 1.84 -11.46 -0.02 0.25 16 17 H 0.02 0.80 7.21 -2.39 -0.02 0.79 16 18 C -0.51 -28.26 9.15 25.60 0.23 -28.02 16 19 H 0.04 2.56 7.99 -2.91 -0.02 2.54 16 20 C 0.02 0.93 5.45 84.65 0.46 1.39 16 21 N -0.95 -58.66 13.96 21.45 0.30 -58.36 16 22 Si 0.95 44.82 24.39 68.60 1.67 46.49 16 23 H -0.26 -11.58 6.86 99.48 0.68 -10.89 16 24 H -0.31 -14.77 7.11 99.48 0.71 -14.06 16 25 H -0.26 -11.46 6.53 99.48 0.65 -10.81 16 26 C 0.14 5.58 5.60 86.36 0.48 6.06 16 27 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 28 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.08 2.83 5.42 -2.39 -0.01 2.81 16 30 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.12 0.72 7.67 -2.39 -0.02 0.70 16 32 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.12 0.88 7.74 -2.38 -0.02 0.86 16 35 H 0.12 2.03 5.54 -2.39 -0.01 2.02 16 36 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.11 2.08 7.13 -2.39 -0.02 2.06 16 38 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16 39 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.03 1.30 3.25 -2.38 -0.01 1.30 16 42 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 43 H 0.07 2.97 5.67 -2.38 -0.01 2.96 16 44 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -77.44 349.96 0.76 -76.68 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 0.93 Total: 14.12 kcal Atomic # 6 Polarization: -46.53 SS G_CDS: 5.55 Total: -40.98 kcal Atomic # 7 Polarization: -109.69 SS G_CDS: -3.41 Total: -113.10 kcal Atomic # 8 Polarization: -65.52 SS G_CDS: -3.66 Total: -69.17 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.67 Total: 46.49 kcal Atomic # 16 Polarization: 86.28 SS G_CDS: -0.32 Total: 85.96 kcal Total: -77.44 0.76 -76.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397811069.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.204 kcal (2) G-P(sol) polarization free energy of solvation -77.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds