Wall clock time and date at job start Tue Mar 31 2020 15:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35320 * 126.12379 * 2 1 4 4 S 1.76204 * 126.04172 * 0.02562 * 3 2 1 5 5 O 1.42100 * 106.40151 * 181.28775 * 4 3 2 6 6 O 1.42103 * 106.40035 * 314.20542 * 4 3 2 7 7 N 1.65600 * 107.22017 * 67.74709 * 4 3 2 8 8 C 1.46923 * 120.62634 * 267.13504 * 7 4 3 9 9 C 1.53626 * 108.54147 * 126.36967 * 8 7 4 10 10 C 1.53041 * 109.24446 * 54.85032 * 9 8 7 11 11 C 1.52999 * 109.46385 * 178.49172 * 10 9 8 12 12 C 1.50702 * 109.47049 * 295.06873 * 11 10 9 13 13 H 1.08000 * 120.00175 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99995 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99766 * 180.02562 * 14 12 11 16 16 Si 1.86794 * 119.99844 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47274 * 90.00410 * 16 14 12 18 18 H 1.48506 * 109.47037 * 209.99816 * 16 14 12 19 19 H 1.48498 * 109.47547 * 330.00139 * 16 14 12 20 20 C 1.53043 * 109.54133 * 298.51466 * 10 9 8 21 21 C 1.46927 * 120.62854 * 87.41122 * 7 4 3 22 22 C 1.39866 * 107.91780 * 180.26390 * 3 2 1 23 23 N 1.30832 * 108.20416 * 359.73604 * 22 3 2 24 24 N 1.34948 * 126.13191 * 179.81515 * 2 1 3 25 25 C 1.46498 * 126.03503 * 359.97438 * 24 2 1 26 26 H 1.08999 * 109.47089 * 264.36191 * 1 2 3 27 27 H 1.08997 * 109.47348 * 24.36033 * 1 2 3 28 28 H 1.09001 * 109.46993 * 144.36316 * 1 2 3 29 29 H 1.09000 * 109.58315 * 246.19541 * 8 7 4 30 30 H 1.08998 * 109.59230 * 6.62931 * 8 7 4 31 31 H 1.09001 * 109.63425 * 294.86298 * 9 8 7 32 32 H 1.09003 * 109.43400 * 174.72197 * 9 8 7 33 33 H 1.09000 * 109.44739 * 58.52484 * 10 9 8 34 34 H 1.08998 * 109.47050 * 55.07151 * 11 10 9 35 35 H 1.08998 * 109.47016 * 175.07278 * 11 10 9 36 36 H 0.96999 * 119.99638 * 179.97438 * 15 14 12 37 37 H 1.09000 * 109.49355 * 301.41044 * 20 10 9 38 38 H 1.08998 * 109.52724 * 181.32658 * 20 10 9 39 39 H 1.08993 * 109.58704 * 353.37781 * 21 7 4 40 40 H 1.08999 * 109.58117 * 113.65641 * 21 7 4 41 41 H 1.08010 * 125.90038 * 179.76148 * 22 3 2 42 42 H 1.08999 * 109.47412 * 269.72391 * 25 24 2 43 43 H 1.09008 * 109.46863 * 29.72095 * 25 24 2 44 44 H 1.08998 * 109.46961 * 149.71911 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 16 1.7651 2.7704 0.0006 5 8 2.9395 3.5698 -0.0302 6 8 0.7370 2.8615 -0.9762 7 7 1.0452 3.0533 1.4649 8 6 -0.4045 2.8829 1.6316 9 6 -0.6522 1.9350 2.8149 10 6 0.0632 2.4777 4.0542 11 6 -0.2111 1.5572 5.2452 12 6 -1.6796 1.5956 5.5819 13 1 -2.3502 2.2142 5.0039 14 6 -2.1672 0.8400 6.6271 15 7 -3.4488 0.8731 6.9205 16 14 -1.0075 -0.2305 7.6262 17 1 -0.4717 0.5525 8.7687 18 1 -1.7441 -1.4135 8.1392 19 1 0.1154 -0.6815 6.7654 20 6 1.5698 2.5358 3.7912 21 6 1.8434 3.4851 2.6204 22 6 3.6334 0.6561 -0.0061 23 7 3.6334 -0.6523 -0.0040 24 7 2.3027 -1.0899 0.0035 25 6 1.8541 -2.4845 0.0085 26 1 -0.3633 -0.1010 1.0227 27 1 -0.3634 0.9361 -0.4239 28 1 -0.3633 -0.8352 -0.5988 29 1 -0.8654 3.8502 1.8321 30 1 -0.8290 2.4547 0.7236 31 1 -0.2664 0.9437 2.5771 32 1 -1.7226 1.8719 3.0112 33 1 -0.3054 3.4790 4.2767 34 1 0.0767 0.5374 4.9900 35 1 0.3677 1.8937 6.1053 36 1 -3.7918 0.3413 7.6556 37 1 1.9346 1.5388 3.5442 38 1 2.0813 2.9001 4.6821 39 1 2.9025 3.4544 2.3649 40 1 1.5639 4.5014 2.8982 41 1 4.5084 1.2893 -0.0113 42 1 1.7479 -2.8283 1.0374 43 1 0.8929 -2.5588 -0.5004 44 1 2.5874 -3.1039 -0.5077 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399281928.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:05 Heat of formation + Delta-G solvation = -9.300240 kcal Electronic energy + Delta-G solvation = -27399.014579 eV Core-core repulsion = 23672.680517 eV Total energy + Delta-G solvation = -3726.334063 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.55806 -38.41498 -37.19949 -35.74933 -34.03808 -33.81926 -32.52277 -32.03346 -30.78170 -28.25489 -27.56426 -27.05303 -24.17466 -23.00804 -22.09237 -21.09159 -20.67455 -19.54644 -18.60773 -17.73366 -17.27908 -16.71428 -16.05405 -15.98839 -15.64747 -14.58252 -14.41454 -14.38807 -14.08018 -13.88799 -13.65959 -13.54228 -13.44424 -13.13087 -13.00383 -12.77129 -12.58060 -12.50545 -12.30371 -11.96751 -11.91401 -11.73331 -11.55745 -11.40529 -11.04760 -10.88061 -10.76749 -10.69875 -10.37565 -9.87000 -9.75975 -9.63603 -9.55458 -9.28513 -9.10307 -8.73461 -8.58233 -6.09182 -4.06391 0.53545 1.37344 2.12410 2.17736 3.12479 3.25110 3.33370 3.35908 3.87403 4.09328 4.18676 4.40035 4.42822 4.72679 4.78007 4.82496 4.90685 5.07247 5.16162 5.21048 5.23028 5.29134 5.34282 5.50907 5.58518 5.58691 5.66047 5.73006 5.81914 5.95605 6.12050 6.21087 6.29485 6.33091 6.54058 6.58084 6.61617 6.79277 6.84017 6.97591 7.22253 7.25112 7.40580 7.75459 8.49257 8.96185 9.54222 11.04008 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.013754 B = 0.004406 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.307985 B = 6353.828395 C = 7251.458871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.216 3.784 3 C -0.820 4.820 4 S 2.723 3.277 5 O -0.965 6.965 6 O -0.965 6.965 7 N -0.994 5.994 8 C 0.114 3.886 9 C -0.121 4.121 10 C -0.070 4.070 11 C -0.010 4.010 12 C -0.515 4.515 13 H 0.075 0.925 14 C 0.066 3.934 15 N -0.904 5.904 16 Si 0.876 3.124 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.268 1.268 20 C -0.133 4.133 21 C 0.125 3.875 22 C 0.134 3.866 23 N -0.296 5.296 24 N -0.363 5.363 25 C 0.090 3.910 26 H 0.107 0.893 27 H 0.109 0.891 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.012 0.988 35 H 0.011 0.989 36 H 0.262 0.738 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.197 0.803 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.065 -2.304 -14.593 17.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.081 3.919 3 C -0.918 4.918 4 S 2.812 3.188 5 O -0.955 6.955 6 O -0.955 6.955 7 N -0.833 5.833 8 C -0.011 4.011 9 C -0.160 4.160 10 C -0.088 4.088 11 C -0.047 4.047 12 C -0.553 4.553 13 H 0.093 0.907 14 C -0.135 4.135 15 N -0.543 5.543 16 Si 0.704 3.296 17 H -0.204 1.204 18 H -0.216 1.216 19 H -0.193 1.193 20 C -0.171 4.171 21 C 0.000 4.000 22 C -0.055 4.055 23 N -0.115 5.115 24 N -0.141 5.141 25 C -0.051 4.051 26 H 0.126 0.874 27 H 0.128 0.872 28 H 0.106 0.894 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.031 0.969 35 H 0.029 0.971 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.214 0.786 42 H 0.102 0.898 43 H 0.111 0.889 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.736 -3.073 -15.153 18.823 hybrid contribution 0.220 -0.855 1.104 1.413 sum 10.956 -3.928 -14.049 18.244 Atomic orbital electron populations 1.21272 0.86143 1.06571 1.05675 1.20901 0.94625 0.85891 0.90472 1.31471 1.01416 1.23669 1.35261 1.00919 0.72802 0.72797 0.72310 1.93527 1.49272 1.66453 1.86263 1.93532 1.57884 1.86653 1.57427 1.57652 1.16103 1.82082 1.27444 1.21794 0.78209 1.01171 0.99895 1.22049 1.02800 0.97387 0.93728 1.20948 0.91878 1.00449 0.95548 1.19625 0.97606 0.94519 0.92951 1.21145 0.91851 1.26894 1.15395 0.90731 1.25020 0.94804 0.96568 0.97064 1.69911 1.12794 1.41542 1.30022 0.86841 0.81415 0.80496 0.80822 1.20365 1.21554 1.19258 1.22056 0.98762 0.99191 0.97141 1.21447 0.94385 0.98566 0.85560 1.23474 0.95862 0.91944 0.94247 1.77403 0.95961 1.12947 1.25154 1.48977 1.04191 1.06501 1.54410 1.22052 1.01415 0.77318 1.04341 0.87445 0.87240 0.89382 0.90697 0.89748 0.92610 0.89217 0.91532 0.96941 0.97109 0.92809 0.92318 0.91224 0.89972 0.90872 0.78579 0.89753 0.88905 0.88809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.42 36.01 0.34 -1.00 16 2 C 0.22 2.61 6.93 -82.26 -0.57 2.04 16 3 C -0.82 -10.80 6.14 -40.01 -0.25 -11.05 16 4 S 2.72 37.32 5.51 -107.50 -0.59 36.73 16 5 O -0.96 -14.91 16.57 -57.17 -0.95 -15.85 16 6 O -0.96 -14.62 15.04 -57.17 -0.86 -15.48 16 7 N -0.99 -12.98 3.28 -113.28 -0.37 -13.35 16 8 C 0.11 1.48 6.23 -3.49 -0.02 1.46 16 9 C -0.12 -1.86 5.17 -26.39 -0.14 -2.00 16 10 C -0.07 -1.21 2.10 -90.58 -0.19 -1.40 16 11 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 12 C -0.51 -13.53 8.94 -34.44 -0.31 -13.84 16 13 H 0.07 2.08 7.30 -52.49 -0.38 1.70 16 14 C 0.07 1.84 5.47 -17.82 -0.10 1.74 16 15 N -0.90 -26.74 13.96 55.43 0.77 -25.96 16 16 Si 0.88 21.00 27.47 -169.99 -4.67 16.33 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 20 C -0.13 -1.92 5.36 -26.61 -0.14 -2.06 16 21 C 0.13 1.60 6.36 -3.71 -0.02 1.57 16 22 C 0.13 1.74 11.69 -17.37 -0.20 1.54 16 23 N -0.30 -4.03 12.57 30.63 0.39 -3.64 16 24 N -0.36 -4.29 4.01 -63.88 -0.26 -4.55 16 25 C 0.09 0.66 11.28 59.85 0.67 1.34 16 26 H 0.11 1.02 6.14 -51.93 -0.32 0.70 16 27 H 0.11 1.11 4.77 -51.93 -0.25 0.86 16 28 H 0.09 0.61 7.27 -51.93 -0.38 0.23 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.08 0.97 5.28 -51.93 -0.27 0.70 16 31 H 0.06 0.82 6.18 -51.93 -0.32 0.50 16 32 H 0.09 1.54 6.91 -51.93 -0.36 1.18 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.01 0.28 7.20 -51.93 -0.37 -0.10 16 35 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.08 0.96 7.20 -51.93 -0.37 0.58 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.20 2.04 8.06 -52.48 -0.42 1.62 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 0.45 7.16 -51.92 -0.37 0.08 16 44 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 354.13 15.07 5.34 5.34 Total: -1.00 -34.48 354.13 -8.57 -43.04 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -6.34 Total: -0.63 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: -1.02 Total: -21.96 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: 0.53 Total: -47.50 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -1.81 Total: -31.34 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal Atomic # 16 Polarization: 37.32 SS G_CDS: -0.59 Total: 36.73 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.48 -8.57 -43.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399281928.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.743 kcal (2) G-P(sol) polarization free energy of solvation -34.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds