Wall clock time and date at job start Tue Mar 31 2020 15:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35320 * 126.12379 * 2 1 4 4 S 1.76204 * 126.04172 * 0.02562 * 3 2 1 5 5 O 1.42100 * 106.40151 * 181.28775 * 4 3 2 6 6 O 1.42103 * 106.40035 * 314.20542 * 4 3 2 7 7 N 1.65600 * 107.22017 * 67.74709 * 4 3 2 8 8 C 1.46923 * 120.62634 * 267.13504 * 7 4 3 9 9 C 1.53626 * 108.54147 * 126.36967 * 8 7 4 10 10 C 1.53041 * 109.24446 * 54.85032 * 9 8 7 11 11 C 1.52999 * 109.46385 * 178.49172 * 10 9 8 12 12 C 1.50702 * 109.47049 * 295.06873 * 11 10 9 13 13 H 1.08000 * 120.00175 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99995 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99766 * 180.02562 * 14 12 11 16 16 Si 1.86794 * 119.99844 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47274 * 90.00410 * 16 14 12 18 18 H 1.48506 * 109.47037 * 209.99816 * 16 14 12 19 19 H 1.48498 * 109.47547 * 330.00139 * 16 14 12 20 20 C 1.53043 * 109.54133 * 298.51466 * 10 9 8 21 21 C 1.46927 * 120.62854 * 87.41122 * 7 4 3 22 22 C 1.39866 * 107.91780 * 180.26390 * 3 2 1 23 23 N 1.30832 * 108.20416 * 359.73604 * 22 3 2 24 24 N 1.34948 * 126.13191 * 179.81515 * 2 1 3 25 25 C 1.46498 * 126.03503 * 359.97438 * 24 2 1 26 26 H 1.08999 * 109.47089 * 264.36191 * 1 2 3 27 27 H 1.08997 * 109.47348 * 24.36033 * 1 2 3 28 28 H 1.09001 * 109.46993 * 144.36316 * 1 2 3 29 29 H 1.09000 * 109.58315 * 246.19541 * 8 7 4 30 30 H 1.08998 * 109.59230 * 6.62931 * 8 7 4 31 31 H 1.09001 * 109.63425 * 294.86298 * 9 8 7 32 32 H 1.09003 * 109.43400 * 174.72197 * 9 8 7 33 33 H 1.09000 * 109.44739 * 58.52484 * 10 9 8 34 34 H 1.08998 * 109.47050 * 55.07151 * 11 10 9 35 35 H 1.08998 * 109.47016 * 175.07278 * 11 10 9 36 36 H 0.96999 * 119.99638 * 179.97438 * 15 14 12 37 37 H 1.09000 * 109.49355 * 301.41044 * 20 10 9 38 38 H 1.08998 * 109.52724 * 181.32658 * 20 10 9 39 39 H 1.08993 * 109.58704 * 353.37781 * 21 7 4 40 40 H 1.08999 * 109.58117 * 113.65641 * 21 7 4 41 41 H 1.08010 * 125.90038 * 179.76148 * 22 3 2 42 42 H 1.08999 * 109.47412 * 269.72391 * 25 24 2 43 43 H 1.09008 * 109.46863 * 29.72095 * 25 24 2 44 44 H 1.08998 * 109.46961 * 149.71911 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 16 1.7651 2.7704 0.0006 5 8 2.9395 3.5698 -0.0302 6 8 0.7370 2.8615 -0.9762 7 7 1.0452 3.0533 1.4649 8 6 -0.4045 2.8829 1.6316 9 6 -0.6522 1.9350 2.8149 10 6 0.0632 2.4777 4.0542 11 6 -0.2111 1.5572 5.2452 12 6 -1.6796 1.5956 5.5819 13 1 -2.3502 2.2142 5.0039 14 6 -2.1672 0.8400 6.6271 15 7 -3.4488 0.8731 6.9205 16 14 -1.0075 -0.2305 7.6262 17 1 -0.4717 0.5525 8.7687 18 1 -1.7441 -1.4135 8.1392 19 1 0.1154 -0.6815 6.7654 20 6 1.5698 2.5358 3.7912 21 6 1.8434 3.4851 2.6204 22 6 3.6334 0.6561 -0.0061 23 7 3.6334 -0.6523 -0.0040 24 7 2.3027 -1.0899 0.0035 25 6 1.8541 -2.4845 0.0085 26 1 -0.3633 -0.1010 1.0227 27 1 -0.3634 0.9361 -0.4239 28 1 -0.3633 -0.8352 -0.5988 29 1 -0.8654 3.8502 1.8321 30 1 -0.8290 2.4547 0.7236 31 1 -0.2664 0.9437 2.5771 32 1 -1.7226 1.8719 3.0112 33 1 -0.3054 3.4790 4.2767 34 1 0.0767 0.5374 4.9900 35 1 0.3677 1.8937 6.1053 36 1 -3.7918 0.3413 7.6556 37 1 1.9346 1.5388 3.5442 38 1 2.0813 2.9001 4.6821 39 1 2.9025 3.4544 2.3649 40 1 1.5639 4.5014 2.8982 41 1 4.5084 1.2893 -0.0113 42 1 1.7479 -2.8283 1.0374 43 1 0.8929 -2.5588 -0.5004 44 1 2.5874 -3.1039 -0.5077 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399281928.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:04 Heat of formation + Delta-G solvation = -33.440852 kcal Electronic energy + Delta-G solvation = -27400.061395 eV Core-core repulsion = 23672.680517 eV Total energy + Delta-G solvation = -3727.380878 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.44366 -39.62326 -38.32276 -36.88149 -35.64164 -34.63277 -33.86001 -33.35192 -31.90129 -29.92439 -28.40023 -27.78277 -25.73616 -24.16845 -23.10562 -22.53623 -21.54841 -20.83495 -19.71774 -18.89874 -18.64647 -18.23432 -17.01773 -16.83282 -16.62827 -16.33236 -15.47939 -15.38314 -15.27465 -15.23265 -14.90699 -14.63336 -14.37979 -14.28828 -14.02407 -13.76576 -13.63459 -13.54877 -13.44614 -13.24841 -13.18497 -13.01840 -12.78686 -12.49790 -12.46837 -12.32269 -12.03225 -11.94665 -11.81137 -11.64871 -11.25585 -11.02309 -10.84350 -10.67963 -10.47700 -10.24284 -9.85884 -8.22211 -6.22789 -0.51652 0.48333 1.18531 1.36159 1.38146 1.39635 1.48108 2.09993 2.39158 2.83068 3.13803 3.18160 3.40360 3.59608 3.77745 3.91464 4.07749 4.10078 4.22379 4.26420 4.32316 4.40723 4.42196 4.47794 4.55632 4.59850 4.70162 4.78444 4.86027 4.93753 4.94852 5.04819 5.13291 5.26313 5.28217 5.31211 5.36655 5.47809 5.55521 5.70715 5.78545 5.82642 5.83414 6.34329 6.39696 6.85581 7.40944 8.94009 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.013754 B = 0.004406 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.307985 B = 6353.828395 C = 7251.458871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.212 3.788 3 C -0.836 4.836 4 S 2.739 3.261 5 O -0.983 6.983 6 O -0.981 6.981 7 N -0.992 5.992 8 C 0.118 3.882 9 C -0.116 4.116 10 C -0.069 4.069 11 C -0.008 4.008 12 C -0.510 4.510 13 H 0.044 0.956 14 C 0.006 3.994 15 N -0.952 5.952 16 Si 0.939 3.061 17 H -0.273 1.273 18 H -0.289 1.289 19 H -0.250 1.250 20 C -0.124 4.124 21 C 0.124 3.876 22 C 0.126 3.874 23 N -0.321 5.321 24 N -0.364 5.364 25 C 0.077 3.923 26 H 0.109 0.891 27 H 0.104 0.896 28 H 0.117 0.883 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.013 0.987 35 H 0.011 0.989 36 H 0.262 0.738 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.213 0.787 42 H 0.090 0.910 43 H 0.120 0.880 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.521 -3.153 -15.218 19.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.076 3.924 3 C -0.935 4.935 4 S 2.829 3.171 5 O -0.974 6.974 6 O -0.972 6.972 7 N -0.831 5.831 8 C -0.006 4.006 9 C -0.154 4.154 10 C -0.088 4.088 11 C -0.045 4.045 12 C -0.548 4.548 13 H 0.062 0.938 14 C -0.191 4.191 15 N -0.594 5.594 16 Si 0.764 3.236 17 H -0.199 1.199 18 H -0.215 1.215 19 H -0.174 1.174 20 C -0.163 4.163 21 C -0.001 4.001 22 C -0.063 4.063 23 N -0.139 5.139 24 N -0.142 5.142 25 C -0.062 4.062 26 H 0.127 0.873 27 H 0.122 0.878 28 H 0.136 0.864 29 H 0.099 0.901 30 H 0.119 0.881 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.031 0.969 35 H 0.029 0.971 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.115 0.885 40 H 0.103 0.897 41 H 0.229 0.771 42 H 0.109 0.891 43 H 0.138 0.862 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 12.212 -3.914 -15.792 20.343 hybrid contribution -0.291 -0.602 1.266 1.431 sum 11.921 -4.516 -14.527 19.327 Atomic orbital electron populations 1.21389 0.84609 1.07635 1.06294 1.21256 0.95612 0.85816 0.89706 1.31372 1.01859 1.23474 1.36795 1.00284 0.72103 0.72716 0.71985 1.93498 1.49916 1.67415 1.86542 1.93507 1.58401 1.87076 1.58170 1.57587 1.16001 1.82120 1.27388 1.21760 0.78427 1.00960 0.99480 1.21937 1.01009 0.98498 0.94000 1.20885 0.94460 0.98878 0.94574 1.19597 0.94388 0.95651 0.94878 1.21479 0.93861 1.25252 1.14253 0.93801 1.25876 0.96207 0.98365 0.98615 1.70061 1.14898 1.43240 1.31156 0.85832 0.79699 0.78630 0.79445 1.19858 1.21549 1.17424 1.21957 0.96186 0.99807 0.98393 1.21535 0.95249 0.98636 0.84642 1.23819 0.96484 0.92092 0.93945 1.77344 0.97390 1.13283 1.25918 1.49299 1.03562 1.07832 1.53499 1.22445 1.03029 0.75386 1.05358 0.87267 0.87772 0.86418 0.90125 0.88115 0.91798 0.91638 0.92396 0.96873 0.97102 0.92884 0.92387 0.90308 0.88505 0.89676 0.77084 0.89114 0.86172 0.87867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.42 71.24 0.67 -1.73 16 2 C 0.21 4.70 6.93 41.41 0.29 4.98 16 3 C -0.84 -20.65 6.14 21.99 0.14 -20.52 16 4 S 2.74 70.75 5.51 -56.49 -0.31 70.44 16 5 O -0.98 -28.90 16.57 -128.00 -2.12 -31.02 16 6 O -0.98 -28.33 15.04 -128.00 -1.92 -30.25 16 7 N -0.99 -24.06 3.28 -512.30 -1.68 -25.74 16 8 C 0.12 2.90 6.23 86.51 0.54 3.44 16 9 C -0.12 -3.46 5.17 30.82 0.16 -3.31 16 10 C -0.07 -2.33 2.10 -10.77 -0.02 -2.35 16 11 C -0.01 -0.33 3.52 29.85 0.10 -0.23 16 12 C -0.51 -27.12 8.94 25.60 0.23 -26.89 16 13 H 0.04 2.54 7.30 -2.91 -0.02 2.52 16 14 C 0.01 0.31 5.47 84.65 0.46 0.78 16 15 N -0.95 -57.56 13.96 21.45 0.30 -57.26 16 16 Si 0.94 42.89 27.47 68.60 1.88 44.78 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 18 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 19 H -0.25 -10.63 6.54 99.48 0.65 -9.98 16 20 C -0.12 -3.33 5.36 30.67 0.16 -3.17 16 21 C 0.12 2.87 6.36 86.36 0.55 3.42 16 22 C 0.13 3.09 11.69 85.24 1.00 4.09 16 23 N -0.32 -8.24 12.57 -57.02 -0.72 -8.96 16 24 N -0.36 -7.84 4.01 -356.03 -1.43 -9.27 16 25 C 0.08 0.94 11.28 127.77 1.44 2.38 16 26 H 0.11 1.83 6.14 -2.39 -0.01 1.81 16 27 H 0.10 1.90 4.77 -2.39 -0.01 1.89 16 28 H 0.12 1.24 7.27 -2.39 -0.02 1.22 16 29 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.10 2.16 5.28 -2.39 -0.01 2.15 16 31 H 0.06 1.79 6.18 -2.39 -0.01 1.77 16 32 H 0.07 2.28 6.91 -2.39 -0.02 2.26 16 33 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.01 0.56 7.20 -2.39 -0.02 0.54 16 35 H 0.01 0.46 7.57 -2.39 -0.02 0.44 16 36 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 37 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.08 1.97 8.14 -2.39 -0.02 1.96 16 39 H 0.10 2.01 7.20 -2.39 -0.02 1.99 16 40 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.21 4.15 8.06 -2.91 -0.02 4.12 16 42 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.12 0.77 7.16 -2.38 -0.02 0.75 16 44 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -74.07 354.13 0.67 -73.40 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 0.96 Total: 12.99 kcal Atomic # 6 Polarization: -44.82 SS G_CDS: 5.72 Total: -39.10 kcal Atomic # 7 Polarization: -97.71 SS G_CDS: -3.53 Total: -101.24 kcal Atomic # 8 Polarization: -57.23 SS G_CDS: -4.05 Total: -61.27 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.88 Total: 44.78 kcal Atomic # 16 Polarization: 70.75 SS G_CDS: -0.31 Total: 70.44 kcal Total: -74.07 0.67 -73.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399281928.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.959 kcal (2) G-P(sol) polarization free energy of solvation -74.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds