Wall clock time and date at job start Tue Mar 31 2020 15:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30502 * 125.64996 * 2 1 4 4 C 1.34128 * 109.25609 * 180.29462 * 3 2 1 5 5 S 1.76198 * 125.99294 * 179.72726 * 4 3 2 6 6 O 1.42110 * 106.40254 * 23.53174 * 5 4 3 7 7 O 1.42095 * 106.40664 * 156.45304 * 5 4 3 8 8 N 1.65607 * 107.21693 * 269.99632 * 5 4 3 9 9 C 1.46923 * 120.63016 * 269.71825 * 8 5 4 10 10 C 1.53614 * 108.54293 * 126.36878 * 9 8 5 11 11 C 1.53039 * 109.24330 * 54.85729 * 10 9 8 12 12 C 1.53001 * 109.45988 * 178.49063 * 11 10 9 13 13 C 1.50695 * 109.47229 * 295.06695 * 12 11 10 14 14 H 1.08002 * 119.99907 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00251 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00073 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99901 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46715 * 90.00399 * 17 15 13 19 19 H 1.48492 * 109.47196 * 210.00132 * 17 15 13 20 20 H 1.48503 * 109.47032 * 330.00554 * 17 15 13 21 21 C 1.53042 * 109.53745 * 298.50995 * 11 10 9 22 22 C 1.46927 * 120.62857 * 89.99952 * 8 5 4 23 23 C 1.34670 * 108.02237 * 359.72151 * 4 3 2 24 24 N 1.35046 * 125.65115 * 179.82620 * 2 1 3 25 25 C 1.46499 * 126.39639 * 359.97025 * 24 2 1 26 26 H 1.08995 * 109.47668 * 270.17785 * 1 2 3 27 27 H 1.09004 * 109.47077 * 30.17905 * 1 2 3 28 28 H 1.09000 * 109.47155 * 150.17549 * 1 2 3 29 29 H 1.08999 * 109.58556 * 246.20437 * 9 8 5 30 30 H 1.08999 * 109.58222 * 6.62458 * 9 8 5 31 31 H 1.09001 * 109.63595 * 294.86363 * 10 9 8 32 32 H 1.08996 * 109.43072 * 174.72384 * 10 9 8 33 33 H 1.08994 * 109.45061 * 58.52579 * 11 10 9 34 34 H 1.08998 * 109.47498 * 55.06917 * 12 11 10 35 35 H 1.09008 * 109.47075 * 175.06768 * 12 11 10 36 36 H 0.97000 * 120.00108 * 179.97438 * 16 15 13 37 37 H 1.09001 * 109.49787 * 301.41149 * 21 11 10 38 38 H 1.08998 * 109.52434 * 181.33354 * 21 11 10 39 39 H 1.09002 * 109.58737 * 353.37164 * 22 8 5 40 40 H 1.08998 * 109.58625 * 113.65655 * 22 8 5 41 41 H 1.08002 * 126.59581 * 180.02562 * 23 4 3 42 42 H 1.09002 * 109.47391 * 269.71816 * 25 24 2 43 43 H 1.09001 * 109.46813 * 149.71873 * 25 24 2 44 44 H 1.09004 * 109.47041 * 29.72000 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2675 1.0604 0.0000 4 6 3.5543 0.6819 -0.0065 5 16 4.9500 1.7573 -0.0159 6 8 4.5080 2.9932 0.5289 7 8 6.0336 1.0132 0.5238 8 7 5.3296 2.0539 -1.6004 9 6 6.2775 1.1902 -2.3174 10 6 5.6071 0.6945 -3.6076 11 6 5.1185 1.8982 -4.4166 12 6 4.4833 1.4119 -5.7208 13 6 5.5348 0.7545 -6.5770 14 1 6.5543 0.6904 -6.2262 15 6 5.1957 0.2358 -7.8087 16 7 6.1135 -0.3375 -8.5561 17 14 3.4326 0.3473 -8.4157 18 1 3.2493 1.6107 -9.1744 19 1 3.1397 -0.8085 -9.3008 20 1 2.5071 0.3286 -7.2545 21 6 4.0808 2.6747 -3.6027 22 6 4.7295 3.1895 -2.3139 23 6 3.5926 -0.6643 -0.0045 24 7 2.2941 -1.0974 0.0033 25 6 1.8425 -2.4910 0.0082 26 1 -0.3634 0.0032 1.0276 27 1 -0.3633 0.8884 -0.5166 28 1 -0.3633 -0.8916 -0.5111 29 1 7.1750 1.7577 -2.5633 30 1 6.5416 0.3384 -1.6906 31 1 4.7599 0.0557 -3.3581 32 1 6.3288 0.1289 -4.1969 33 1 5.9624 2.5492 -4.6444 34 1 3.6962 0.6923 -5.4955 35 1 4.0573 2.2606 -6.2561 36 1 5.8748 -0.7027 -9.4224 37 1 3.2479 2.0172 -3.3532 38 1 3.7155 3.5183 -4.1882 39 1 3.9720 3.6572 -1.6850 40 1 5.5029 3.9179 -2.5574 41 1 4.4776 -1.2832 -0.0080 42 1 1.7357 -2.8348 1.0370 43 1 2.5746 -3.1119 -0.5083 44 1 0.8812 -2.5632 -0.5007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399433628.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:51 Heat of formation + Delta-G solvation = -51.063948 kcal Electronic energy + Delta-G solvation = -26884.907252 eV Core-core repulsion = 23156.762179 eV Total energy + Delta-G solvation = -3728.145073 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.27416 -39.64850 -38.36009 -36.96558 -35.67319 -35.20503 -33.89333 -32.92175 -31.95766 -29.95623 -28.54114 -27.87599 -25.77976 -24.21559 -23.42567 -22.64008 -21.21292 -20.97895 -19.84083 -19.07294 -18.79435 -18.34581 -17.04558 -16.97985 -16.80517 -16.34632 -15.60667 -15.33310 -15.27090 -15.26292 -14.86182 -14.67651 -14.50436 -14.33138 -14.21849 -13.66384 -13.64404 -13.50230 -13.44005 -13.27860 -13.17197 -13.14809 -12.85042 -12.68420 -12.49425 -12.35773 -12.09429 -12.00259 -11.69055 -11.34604 -11.24464 -11.08187 -10.91458 -10.85144 -10.70059 -9.99028 -9.80338 -8.24013 -6.25153 -0.63002 0.55602 1.35623 1.36594 1.45923 1.47848 1.67155 2.08963 2.38173 2.74173 3.08148 3.11591 3.59225 3.72397 3.73721 3.89003 4.03535 4.05209 4.13826 4.31177 4.32294 4.40174 4.51606 4.51989 4.62625 4.63160 4.69370 4.83336 4.88569 4.95245 4.98462 5.01065 5.08553 5.22048 5.22242 5.23449 5.30976 5.41330 5.51053 5.66820 5.77709 5.78901 6.01952 6.37177 6.70669 6.82532 7.38532 8.92312 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012274 B = 0.004236 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.612887 B = 6608.704991 C = 7743.155178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.200 3.800 3 N -0.458 5.458 4 C -0.585 4.585 5 S 2.740 3.260 6 O -0.980 6.980 7 O -0.974 6.974 8 N -0.989 5.989 9 C 0.122 3.878 10 C -0.112 4.112 11 C -0.069 4.069 12 C -0.006 4.006 13 C -0.514 4.514 14 H 0.042 0.958 15 C 0.005 3.995 16 N -0.952 5.952 17 Si 0.942 3.058 18 H -0.270 1.270 19 H -0.287 1.287 20 H -0.252 1.252 21 C -0.122 4.122 22 C 0.124 3.876 23 C 0.068 3.932 24 N -0.450 5.450 25 C 0.053 3.947 26 H 0.099 0.901 27 H 0.089 0.911 28 H 0.104 0.896 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.011 0.989 35 H 0.013 0.987 36 H 0.263 0.737 37 H 0.054 0.946 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.217 0.783 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.639 -3.722 19.599 23.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.067 4.067 3 N -0.177 5.177 4 C -0.797 4.797 5 S 2.829 3.171 6 O -0.970 6.970 7 O -0.964 6.964 8 N -0.828 5.828 9 C -0.002 4.002 10 C -0.151 4.151 11 C -0.088 4.088 12 C -0.043 4.043 13 C -0.552 4.552 14 H 0.060 0.940 15 C -0.191 4.191 16 N -0.594 5.594 17 Si 0.766 3.234 18 H -0.196 1.196 19 H -0.213 1.213 20 H -0.175 1.175 21 C -0.161 4.161 22 C 0.000 4.000 23 C -0.075 4.075 24 N -0.129 5.129 25 C -0.087 4.087 26 H 0.118 0.882 27 H 0.108 0.892 28 H 0.122 0.878 29 H 0.102 0.898 30 H 0.118 0.882 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.029 0.971 35 H 0.032 0.968 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.233 0.767 42 H 0.121 0.879 43 H 0.124 0.876 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.546 -2.820 20.192 23.430 hybrid contribution -0.526 -1.411 -1.202 1.927 sum -12.071 -4.231 18.990 22.897 Atomic orbital electron populations 1.20435 0.81438 1.05609 1.05148 1.24431 0.97679 0.81077 1.03500 1.70207 0.99650 1.29704 1.18118 1.33241 1.12381 1.08147 1.25921 1.00437 0.72144 0.72474 0.72084 1.93500 1.83128 1.43511 1.76873 1.93540 1.51494 1.74193 1.77129 1.57577 1.55920 1.38861 1.30489 1.21699 0.91180 0.94033 0.93309 1.21841 1.00343 0.97689 0.95269 1.20893 0.97583 0.96332 0.93973 1.19577 0.95413 0.95373 0.93987 1.21471 0.96156 1.35953 1.01597 0.93971 1.25906 1.01290 0.94820 0.97119 1.70062 1.35656 1.41266 1.12367 0.85788 0.80975 0.77844 0.78767 1.19554 1.21311 1.17546 1.21927 0.97915 1.00334 0.95892 1.21535 0.98218 0.86922 0.93350 1.23099 0.89500 0.94541 1.00375 1.45890 1.05623 1.09933 1.51447 1.22645 1.04007 0.76028 1.05989 0.88235 0.89190 0.87787 0.89769 0.88168 0.92773 0.91739 0.92150 0.97106 0.96841 0.92796 0.92751 0.90089 0.89071 0.89371 0.76661 0.87890 0.87628 0.86857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.19 71.23 0.73 -0.10 16 2 C 0.20 4.35 7.90 138.13 1.09 5.45 16 3 N -0.46 -13.65 11.25 -185.63 -2.09 -15.74 16 4 C -0.59 -16.66 7.13 83.52 0.60 -16.06 16 5 S 2.74 82.41 5.85 -56.49 -0.33 82.08 16 6 O -0.98 -35.03 16.73 -128.00 -2.14 -37.17 16 7 O -0.97 -30.58 16.55 -128.00 -2.12 -32.69 16 8 N -0.99 -28.02 3.28 -512.31 -1.68 -29.70 16 9 C 0.12 3.40 6.41 86.51 0.55 3.96 16 10 C -0.11 -3.81 5.21 30.81 0.16 -3.65 16 11 C -0.07 -2.54 2.10 -10.77 -0.02 -2.56 16 12 C -0.01 -0.28 3.52 29.85 0.10 -0.17 16 13 C -0.51 -28.37 8.94 25.60 0.23 -28.14 16 14 H 0.04 2.53 7.30 -2.91 -0.02 2.51 16 15 C 0.00 0.28 5.47 84.66 0.46 0.74 16 16 N -0.95 -58.69 13.96 21.45 0.30 -58.39 16 17 Si 0.94 43.82 27.47 68.60 1.88 45.70 16 18 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 19 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 20 H -0.25 -10.96 6.54 99.48 0.65 -10.31 16 21 C -0.12 -3.71 5.36 30.67 0.16 -3.55 16 22 C 0.12 3.43 6.37 86.36 0.55 3.98 16 23 C 0.07 1.51 11.31 83.09 0.94 2.45 16 24 N -0.45 -8.04 3.15 -537.60 -1.69 -9.74 16 25 C 0.05 0.36 10.98 127.77 1.40 1.76 16 26 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.10 0.64 7.06 -2.39 -0.02 0.63 16 29 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.10 2.44 7.12 -2.39 -0.02 2.42 16 31 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.06 2.48 6.91 -2.39 -0.02 2.46 16 33 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.01 0.49 7.20 -2.39 -0.02 0.47 16 35 H 0.01 0.60 7.57 -2.38 -0.02 0.58 16 36 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 37 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.09 2.47 7.13 -2.39 -0.02 2.46 16 40 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.22 3.42 8.06 -2.91 -0.02 3.39 16 42 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 43 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.11 0.33 7.04 -2.38 -0.02 0.32 16 Total: -1.00 -80.94 364.99 0.02 -80.92 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 0.94 Total: 10.63 kcal Atomic # 6 Polarization: -42.86 SS G_CDS: 6.96 Total: -35.90 kcal Atomic # 7 Polarization: -108.40 SS G_CDS: -5.17 Total: -113.57 kcal Atomic # 8 Polarization: -65.61 SS G_CDS: -4.26 Total: -69.87 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.88 Total: 45.70 kcal Atomic # 16 Polarization: 82.41 SS G_CDS: -0.33 Total: 82.08 kcal Total: -80.94 0.02 -80.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399433628.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.857 kcal (2) G-P(sol) polarization free energy of solvation -80.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds