Wall clock time and date at job start Tue Mar 31 2020 14:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38576 * 119.96479 * 2 1 4 4 C 1.38815 * 118.06697 * 179.97438 * 3 2 1 5 5 C 1.39729 * 117.89878 * 0.02562 * 4 3 2 6 6 C 1.48120 * 120.18202 * 180.02562 * 5 4 3 7 7 O 1.21523 * 119.99923 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99787 * 179.97438 * 6 5 4 9 9 C 1.39826 * 119.99787 * 185.27702 * 8 6 5 10 10 C 1.38954 * 120.04226 * 213.36944 * 9 8 6 11 11 C 1.38121 * 120.03561 * 179.97438 * 10 9 8 12 12 C 1.38218 * 120.12879 * 359.77679 * 11 10 9 13 13 C 1.38778 * 120.08444 * 0.50102 * 12 11 10 14 14 O 1.35900 * 120.01263 * 179.74623 * 13 12 11 15 15 C 1.42900 * 117.00377 * 359.72518 * 14 13 12 16 16 C 1.52999 * 109.46922 * 180.02562 * 15 14 13 17 17 C 1.50698 * 109.46990 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99852 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99915 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99662 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 120.00021 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47172 * 89.99939 * 21 19 17 23 23 H 1.48508 * 109.47067 * 209.99993 * 21 19 17 24 24 H 1.48500 * 109.46990 * 329.99862 * 21 19 17 25 25 C 1.38611 * 119.96151 * 359.47293 * 13 12 11 26 26 N 1.32792 * 119.63401 * 0.27564 * 5 4 3 27 27 N 1.28347 * 122.02285 * 359.39582 * 26 5 4 28 28 H 1.08997 * 109.46685 * 90.00024 * 1 2 3 29 29 H 1.09008 * 109.46941 * 209.99923 * 1 2 3 30 30 H 1.08998 * 109.47079 * 329.99815 * 1 2 3 31 31 H 1.07993 * 120.96331 * 0.02562 * 3 2 1 32 32 H 1.08002 * 121.04783 * 180.02562 * 4 3 2 33 33 H 0.97002 * 119.99877 * 5.27996 * 8 6 5 34 34 H 1.07995 * 119.98436 * 359.97438 * 10 9 8 35 35 H 1.08001 * 119.93739 * 180.02562 * 11 10 9 36 36 H 1.07994 * 119.95969 * 180.27183 * 12 11 10 37 37 H 1.08997 * 109.47262 * 300.00206 * 15 14 13 38 38 H 1.09001 * 109.46908 * 60.00554 * 15 14 13 39 39 H 1.09007 * 109.47067 * 300.00014 * 16 15 14 40 40 H 1.08996 * 109.47260 * 59.99973 * 16 15 14 41 41 H 0.97003 * 119.99412 * 180.02562 * 20 19 17 42 42 H 1.08010 * 120.06081 * 180.25400 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1992 1.2005 0.0000 4 6 3.5866 1.1546 0.0005 5 6 4.1992 -0.1013 0.0005 6 6 5.6764 -0.2093 0.0017 7 8 6.3591 0.7960 0.0022 8 7 6.2634 -1.4226 0.0021 9 6 7.6532 -1.5268 0.1146 10 6 8.3287 -2.5531 -0.5345 11 6 9.7016 -2.6555 -0.4237 12 6 10.4075 -1.7357 0.3286 13 6 9.7376 -0.7120 0.9837 14 8 10.4326 0.1886 1.7271 15 6 11.8497 0.0178 1.7953 16 6 12.4543 1.1173 2.6708 17 6 13.9489 0.9376 2.7422 18 1 14.4202 0.1206 2.2161 19 6 14.7144 1.8161 3.4791 20 7 16.0187 1.6589 3.5418 21 14 13.8990 3.2287 4.3896 22 1 13.5316 2.7883 5.7594 23 1 14.8417 4.3732 4.4738 24 1 12.6757 3.6477 3.6595 25 6 8.3599 -0.6054 0.8746 26 7 3.4496 -1.1975 -0.0056 27 7 2.1672 -1.1451 0.0000 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5139 30 1 -0.3633 0.8899 0.5139 31 1 1.6745 2.1444 0.0004 32 1 4.1740 2.0609 0.0010 33 1 5.7216 -2.2235 -0.0756 34 1 7.7799 -3.2710 -1.1258 35 1 10.2251 -3.4536 -0.9292 36 1 11.4815 -1.8158 0.4097 37 1 12.0779 -0.9566 2.2271 38 1 12.2716 0.0786 0.7921 39 1 12.2261 2.0920 2.2393 40 1 12.0323 1.0562 3.6739 41 1 16.5572 2.2768 4.0606 42 1 7.8373 0.1931 1.3804 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411504536.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:31 Heat of formation + Delta-G solvation = 9.716943 kcal Electronic energy + Delta-G solvation = -25538.279578 eV Core-core repulsion = 21677.326211 eV Total energy + Delta-G solvation = -3860.953367 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.81939 -40.55380 -39.30781 -37.31000 -35.00299 -34.41575 -33.65288 -33.31229 -31.12978 -30.17119 -29.43529 -28.58811 -25.74614 -25.22480 -24.19442 -23.02128 -22.12624 -21.34592 -20.27273 -18.96059 -18.44718 -17.69957 -16.77031 -16.26605 -16.23053 -16.03320 -15.70915 -15.55863 -15.43223 -15.17495 -14.74788 -14.30318 -14.08150 -13.82010 -13.58431 -13.39084 -13.19835 -13.01327 -12.91055 -12.56549 -12.08269 -11.94163 -11.81594 -11.57687 -10.98466 -10.92081 -10.86648 -10.50346 -10.37173 -10.33102 -10.26372 -10.12565 -9.94463 -9.79696 -9.33091 -8.61214 -8.35000 -7.89848 -6.12474 -4.13188 -0.16140 0.17884 1.28601 1.57567 2.22934 2.48150 3.09043 3.22857 3.29907 3.37033 3.43471 3.67811 3.78501 3.91048 3.95387 4.10686 4.35122 4.37492 4.40532 4.83197 4.89346 4.94816 5.07771 5.15229 5.21821 5.23641 5.30514 5.35941 5.40085 5.56119 5.60646 5.74642 5.93579 5.94077 6.19027 6.27132 6.42507 6.48388 6.62777 6.83778 7.04176 7.11240 7.25152 7.63519 7.65388 7.92261 7.98021 8.39834 8.88245 9.47999 10.99980 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.018328 B = 0.002146 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.385346 B =13043.205634 C =14388.646973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.086 3.914 3 C -0.121 4.121 4 C -0.058 4.058 5 C 0.018 3.982 6 C 0.575 3.425 7 O -0.497 6.497 8 N -0.649 5.649 9 C 0.174 3.826 10 C -0.189 4.189 11 C -0.060 4.060 12 C -0.221 4.221 13 C 0.163 3.837 14 O -0.316 6.316 15 C 0.072 3.928 16 C -0.010 4.010 17 C -0.526 4.526 18 H 0.075 0.925 19 C 0.072 3.928 20 N -0.898 5.898 21 Si 0.880 3.120 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.263 1.263 25 C -0.163 4.163 26 N -0.205 5.205 27 N -0.241 5.241 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.160 0.840 32 H 0.166 0.834 33 H 0.421 0.579 34 H 0.124 0.876 35 H 0.128 0.872 36 H 0.135 0.865 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.028 0.972 40 H 0.023 0.977 41 H 0.266 0.734 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.932 -5.532 -9.714 33.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.057 4.057 3 C -0.150 4.150 4 C -0.087 4.087 5 C -0.128 4.128 6 C 0.359 3.641 7 O -0.369 6.369 8 N -0.295 5.295 9 C 0.080 3.920 10 C -0.209 4.209 11 C -0.078 4.078 12 C -0.240 4.240 13 C 0.116 3.884 14 O -0.229 6.229 15 C -0.002 4.002 16 C -0.047 4.047 17 C -0.564 4.564 18 H 0.093 0.907 19 C -0.130 4.130 20 N -0.536 5.536 21 Si 0.707 3.293 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.187 1.187 25 C -0.183 4.183 26 N -0.052 5.052 27 N -0.086 5.086 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.178 0.822 32 H 0.184 0.816 33 H 0.259 0.741 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.152 0.848 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.046 0.954 40 H 0.042 0.958 41 H 0.075 0.925 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -31.401 -6.172 -9.507 33.384 hybrid contribution -0.269 1.775 0.384 1.836 sum -31.670 -4.397 -9.123 33.250 Atomic orbital electron populations 1.20775 0.86797 1.04618 1.04100 1.23155 0.99540 0.90414 0.92541 1.22365 0.94162 1.00342 0.98144 1.22501 0.95205 0.99210 0.91761 1.22671 0.95803 0.92375 1.01986 1.17628 0.85484 0.83875 0.77133 1.90900 1.63127 1.35749 1.47096 1.43197 1.05991 1.09182 1.71090 1.17254 0.81602 0.96679 0.96418 1.20662 0.94704 1.01181 1.04368 1.20697 0.93010 0.97602 0.96534 1.21438 1.01219 0.97768 1.03592 1.18868 0.91091 0.88499 0.89973 1.86137 1.23053 1.48905 1.64816 1.23110 0.74729 1.01402 1.00975 1.19593 0.96304 0.93917 0.94892 1.20840 0.88827 1.14632 1.32118 0.90708 1.24930 0.94689 0.97522 0.95866 1.69896 1.04683 1.37812 1.41184 0.86763 0.79808 0.82147 0.80608 1.20069 1.21175 1.18710 1.20227 0.91768 1.02824 1.03520 1.73184 0.99983 1.26044 1.05977 1.73092 1.00667 1.24612 1.10199 0.89269 0.89473 0.89765 0.82208 0.81596 0.74066 0.85761 0.85389 0.84769 0.92385 0.92354 0.95357 0.95827 0.92468 0.84318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.29 10.19 36.01 0.37 0.07 16 2 C 0.09 0.55 6.87 -82.32 -0.57 -0.02 16 3 C -0.12 -0.64 9.86 -39.24 -0.39 -1.03 16 4 C -0.06 -0.45 9.73 -38.81 -0.38 -0.83 16 5 C 0.02 0.18 6.83 -82.84 -0.57 -0.38 16 6 C 0.57 7.09 7.55 -12.20 -0.09 7.00 16 7 O -0.50 -7.63 14.08 5.35 0.08 -7.55 16 8 N -0.65 -7.41 5.32 -10.66 -0.06 -7.47 16 9 C 0.17 2.37 6.27 -83.75 -0.53 1.84 16 10 C -0.19 -2.24 9.96 -39.36 -0.39 -2.63 16 11 C -0.06 -0.75 10.03 -39.63 -0.40 -1.14 16 12 C -0.22 -3.39 9.04 -39.39 -0.36 -3.75 16 13 C 0.16 2.90 6.68 -39.24 -0.26 2.63 16 14 O -0.32 -6.47 10.13 -19.43 -0.20 -6.66 16 15 C 0.07 1.51 4.68 37.16 0.17 1.68 16 16 C -0.01 -0.24 4.41 -27.88 -0.12 -0.36 16 17 C -0.53 -14.96 9.66 -34.44 -0.33 -15.30 16 18 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 19 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 20 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 21 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 25 C -0.16 -2.68 8.59 -39.24 -0.34 -3.02 16 26 N -0.21 -2.12 10.76 33.32 0.36 -1.76 16 27 N -0.24 -2.28 11.43 33.63 0.38 -1.89 16 28 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.09 0.26 8.14 -51.92 -0.42 -0.16 16 30 H 0.08 0.07 8.09 -51.93 -0.42 -0.35 16 31 H 0.16 0.27 8.06 -52.49 -0.42 -0.15 16 32 H 0.17 1.12 7.72 -52.49 -0.41 0.71 16 33 H 0.42 3.78 8.18 -40.82 -0.33 3.44 16 34 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.13 2.01 6.29 -52.49 -0.33 1.68 16 37 H 0.06 1.16 7.67 -51.93 -0.40 0.76 16 38 H 0.06 1.18 7.65 -51.93 -0.40 0.78 16 39 H 0.03 0.71 7.20 -51.92 -0.37 0.33 16 40 H 0.02 0.58 7.57 -51.93 -0.39 0.18 16 41 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.14 2.43 6.42 -52.48 -0.34 2.09 16 LS Contribution 363.27 15.07 5.47 5.47 Total: -1.00 -34.60 363.27 -7.22 -41.82 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -5.09 Total: 0.72 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -4.27 Total: -13.22 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 1.46 Total: -37.77 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.12 Total: -14.21 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.60 -7.22 -41.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411504536.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.537 kcal (2) G-P(sol) polarization free energy of solvation -34.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds