Wall clock time and date at job start Tue Mar 31 2020 14:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38576 * 119.96479 * 2 1 4 4 C 1.38815 * 118.06697 * 179.97438 * 3 2 1 5 5 C 1.39729 * 117.89878 * 0.02562 * 4 3 2 6 6 C 1.48120 * 120.18202 * 180.02562 * 5 4 3 7 7 O 1.21523 * 119.99923 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99787 * 179.97438 * 6 5 4 9 9 C 1.39826 * 119.99787 * 185.27702 * 8 6 5 10 10 C 1.38954 * 120.04226 * 213.36944 * 9 8 6 11 11 C 1.38121 * 120.03561 * 179.97438 * 10 9 8 12 12 C 1.38218 * 120.12879 * 359.77679 * 11 10 9 13 13 C 1.38778 * 120.08444 * 0.50102 * 12 11 10 14 14 O 1.35900 * 120.01263 * 179.74623 * 13 12 11 15 15 C 1.42900 * 117.00377 * 359.72518 * 14 13 12 16 16 C 1.52999 * 109.46922 * 180.02562 * 15 14 13 17 17 C 1.50698 * 109.46990 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99852 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99915 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99662 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 120.00021 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47172 * 89.99939 * 21 19 17 23 23 H 1.48508 * 109.47067 * 209.99993 * 21 19 17 24 24 H 1.48500 * 109.46990 * 329.99862 * 21 19 17 25 25 C 1.38611 * 119.96151 * 359.47293 * 13 12 11 26 26 N 1.32792 * 119.63401 * 0.27564 * 5 4 3 27 27 N 1.28347 * 122.02285 * 359.39582 * 26 5 4 28 28 H 1.08997 * 109.46685 * 90.00024 * 1 2 3 29 29 H 1.09008 * 109.46941 * 209.99923 * 1 2 3 30 30 H 1.08998 * 109.47079 * 329.99815 * 1 2 3 31 31 H 1.07993 * 120.96331 * 0.02562 * 3 2 1 32 32 H 1.08002 * 121.04783 * 180.02562 * 4 3 2 33 33 H 0.97002 * 119.99877 * 5.27996 * 8 6 5 34 34 H 1.07995 * 119.98436 * 359.97438 * 10 9 8 35 35 H 1.08001 * 119.93739 * 180.02562 * 11 10 9 36 36 H 1.07994 * 119.95969 * 180.27183 * 12 11 10 37 37 H 1.08997 * 109.47262 * 300.00206 * 15 14 13 38 38 H 1.09001 * 109.46908 * 60.00554 * 15 14 13 39 39 H 1.09007 * 109.47067 * 300.00014 * 16 15 14 40 40 H 1.08996 * 109.47260 * 59.99973 * 16 15 14 41 41 H 0.97003 * 119.99412 * 180.02562 * 20 19 17 42 42 H 1.08010 * 120.06081 * 180.25400 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1992 1.2005 0.0000 4 6 3.5866 1.1546 0.0005 5 6 4.1992 -0.1013 0.0005 6 6 5.6764 -0.2093 0.0017 7 8 6.3591 0.7960 0.0022 8 7 6.2634 -1.4226 0.0021 9 6 7.6532 -1.5268 0.1146 10 6 8.3287 -2.5531 -0.5345 11 6 9.7016 -2.6555 -0.4237 12 6 10.4075 -1.7357 0.3286 13 6 9.7376 -0.7120 0.9837 14 8 10.4326 0.1886 1.7271 15 6 11.8497 0.0178 1.7953 16 6 12.4543 1.1173 2.6708 17 6 13.9489 0.9376 2.7422 18 1 14.4202 0.1206 2.2161 19 6 14.7144 1.8161 3.4791 20 7 16.0187 1.6589 3.5418 21 14 13.8990 3.2287 4.3896 22 1 13.5316 2.7883 5.7594 23 1 14.8417 4.3732 4.4738 24 1 12.6757 3.6477 3.6595 25 6 8.3599 -0.6054 0.8746 26 7 3.4496 -1.1975 -0.0056 27 7 2.1672 -1.1451 0.0000 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5139 30 1 -0.3633 0.8899 0.5139 31 1 1.6745 2.1444 0.0004 32 1 4.1740 2.0609 0.0010 33 1 5.7216 -2.2235 -0.0756 34 1 7.7799 -3.2710 -1.1258 35 1 10.2251 -3.4536 -0.9292 36 1 11.4815 -1.8158 0.4097 37 1 12.0779 -0.9566 2.2271 38 1 12.2716 0.0786 0.7921 39 1 12.2261 2.0920 2.2393 40 1 12.0323 1.0562 3.6739 41 1 16.5572 2.2768 4.0606 42 1 7.8373 0.1931 1.3804 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411504536.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:30 Heat of formation + Delta-G solvation = -13.891220 kcal Electronic energy + Delta-G solvation = -25539.303304 eV Core-core repulsion = 21677.326211 eV Total energy + Delta-G solvation = -3861.977094 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.51157 -41.55091 -40.53315 -38.55530 -35.98811 -35.39620 -35.01947 -34.26493 -32.95513 -31.31827 -30.57318 -29.24120 -27.14351 -26.35582 -24.94062 -23.94119 -23.41537 -22.64894 -21.68385 -20.01116 -19.51416 -18.85312 -18.32621 -17.29968 -17.08333 -16.98415 -16.89082 -16.75919 -16.54558 -16.30366 -15.95768 -15.68856 -14.95365 -14.84551 -14.52199 -14.46724 -14.36055 -14.28082 -13.77817 -13.47201 -13.38713 -13.23018 -12.78885 -12.74812 -12.66682 -12.40419 -12.13241 -11.88828 -11.74820 -11.52352 -11.43222 -11.37814 -11.19584 -10.93876 -10.88512 -10.83071 -9.50931 -9.09275 -8.36523 -6.42853 -0.80842 -0.36754 0.20065 0.43285 1.33692 1.35298 1.38913 1.48290 1.58948 2.27341 2.31456 2.40799 2.62519 2.77565 2.98267 3.20845 3.41963 3.60050 3.74376 3.86171 3.92733 4.11602 4.14919 4.19943 4.21396 4.36148 4.49001 4.51769 4.58558 4.63146 4.67311 4.76253 4.90546 4.97824 5.07909 5.17312 5.19982 5.27517 5.28362 5.34404 5.44698 5.50631 5.80154 6.11074 6.14801 6.47849 6.62341 6.74788 7.22206 7.36205 8.78978 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.018328 B = 0.002146 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.385346 B =13043.205634 C =14388.646973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.087 3.913 3 C -0.103 4.103 4 C -0.069 4.069 5 C 0.000 4.000 6 C 0.575 3.425 7 O -0.535 6.535 8 N -0.640 5.640 9 C 0.173 3.827 10 C -0.171 4.171 11 C -0.051 4.051 12 C -0.230 4.230 13 C 0.129 3.871 14 O -0.338 6.338 15 C 0.086 3.914 16 C -0.008 4.008 17 C -0.536 4.536 18 H 0.045 0.955 19 C 0.016 3.984 20 N -0.940 5.940 21 Si 0.946 3.054 22 H -0.264 1.264 23 H -0.277 1.277 24 H -0.255 1.255 25 C -0.180 4.180 26 N -0.221 5.221 27 N -0.270 5.270 28 H 0.104 0.896 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.204 0.796 32 H 0.171 0.829 33 H 0.434 0.566 34 H 0.165 0.835 35 H 0.166 0.834 36 H 0.133 0.867 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.024 0.976 40 H 0.025 0.975 41 H 0.270 0.730 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.321 -5.689 -10.529 37.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.056 4.056 3 C -0.131 4.131 4 C -0.097 4.097 5 C -0.146 4.146 6 C 0.360 3.640 7 O -0.409 6.409 8 N -0.286 5.286 9 C 0.079 3.921 10 C -0.191 4.191 11 C -0.069 4.069 12 C -0.249 4.249 13 C 0.083 3.917 14 O -0.252 6.252 15 C 0.011 3.989 16 C -0.045 4.045 17 C -0.574 4.574 18 H 0.064 0.936 19 C -0.183 4.183 20 N -0.579 5.579 21 Si 0.769 3.231 22 H -0.189 1.189 23 H -0.202 1.202 24 H -0.179 1.179 25 C -0.201 4.201 26 N -0.067 5.067 27 N -0.115 5.115 28 H 0.122 0.878 29 H 0.102 0.898 30 H 0.130 0.870 31 H 0.221 0.779 32 H 0.188 0.812 33 H 0.274 0.726 34 H 0.182 0.818 35 H 0.183 0.817 36 H 0.151 0.849 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.043 0.957 40 H 0.044 0.956 41 H 0.079 0.921 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -34.830 -6.375 -10.335 36.886 hybrid contribution 0.613 1.721 0.536 1.904 sum -34.216 -4.654 -9.799 35.895 Atomic orbital electron populations 1.20948 0.84006 1.05844 1.05336 1.23797 1.01272 0.89902 0.90584 1.22833 0.92974 1.01770 0.95538 1.22701 0.96587 0.98451 0.92011 1.22439 0.94394 0.93649 1.04164 1.18005 0.86498 0.83448 0.75999 1.90876 1.64251 1.36896 1.48898 1.43165 1.05281 1.09669 1.70521 1.17406 0.82552 0.96399 0.95782 1.21121 0.94687 1.00479 1.02832 1.21132 0.93342 0.97305 0.95158 1.21570 1.01387 0.97923 1.04064 1.19115 0.91476 0.89530 0.91612 1.86042 1.22251 1.50553 1.66355 1.22729 0.75646 1.00158 1.00327 1.19457 0.94204 0.95075 0.95777 1.21093 0.90889 1.13788 1.31589 0.93625 1.25836 0.95220 1.00401 0.96834 1.70019 1.06244 1.39266 1.42406 0.85719 0.79056 0.78765 0.79549 1.18908 1.20230 1.17876 1.20196 0.91534 1.03521 1.04827 1.73108 1.00653 1.26288 1.06644 1.73031 1.00284 1.26520 1.11640 0.87775 0.89810 0.87000 0.77929 0.81157 0.72576 0.81782 0.81654 0.84892 0.91821 0.92110 0.95735 0.95642 0.92064 0.86336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.24 10.19 71.24 0.73 0.49 16 2 C 0.09 0.90 6.87 42.59 0.29 1.20 16 3 C -0.10 -0.81 9.86 22.49 0.22 -0.58 16 4 C -0.07 -1.00 9.73 22.77 0.22 -0.78 16 5 C 0.00 0.00 6.83 41.98 0.29 0.29 16 6 C 0.57 14.48 7.55 86.87 0.66 15.14 16 7 O -0.53 -17.15 14.08 -3.79 -0.05 -17.20 16 8 N -0.64 -14.35 5.32 -305.91 -1.63 -15.98 16 9 C 0.17 4.59 6.27 38.17 0.24 4.83 16 10 C -0.17 -3.60 9.96 22.41 0.22 -3.37 16 11 C -0.05 -1.14 10.03 22.24 0.22 -0.92 16 12 C -0.23 -6.97 9.04 22.39 0.20 -6.77 16 13 C 0.13 4.69 6.68 22.49 0.15 4.84 16 14 O -0.34 -14.33 10.13 -92.43 -0.94 -15.26 16 15 C 0.09 3.70 4.68 71.98 0.34 4.04 16 16 C -0.01 -0.38 4.41 29.85 0.13 -0.25 16 17 C -0.54 -31.29 9.66 25.60 0.25 -31.04 16 18 H 0.05 2.85 7.99 -2.91 -0.02 2.82 16 19 C 0.02 0.91 5.47 84.66 0.46 1.38 16 20 N -0.94 -58.58 13.96 21.45 0.30 -58.28 16 21 Si 0.95 45.29 27.47 68.60 1.88 47.17 16 22 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 24 H -0.25 -11.79 6.54 99.48 0.65 -11.14 16 25 C -0.18 -6.13 8.59 22.49 0.19 -5.93 16 26 N -0.22 -4.45 10.76 -48.50 -0.52 -4.97 16 27 N -0.27 -4.81 11.43 -47.52 -0.54 -5.35 16 28 H 0.10 0.00 8.14 -2.39 -0.02 -0.02 16 29 H 0.08 0.30 8.14 -2.38 -0.02 0.28 16 30 H 0.11 -0.32 8.09 -2.39 -0.02 -0.34 16 31 H 0.20 -0.25 8.06 -2.91 -0.02 -0.27 16 32 H 0.17 2.23 7.72 -2.91 -0.02 2.21 16 33 H 0.43 7.34 8.18 -92.71 -0.76 6.58 16 34 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 35 H 0.17 2.49 8.06 -2.91 -0.02 2.46 16 36 H 0.13 3.98 6.29 -2.91 -0.02 3.96 16 37 H 0.06 2.62 7.67 -2.39 -0.02 2.60 16 38 H 0.06 2.54 7.65 -2.39 -0.02 2.52 16 39 H 0.02 1.24 7.20 -2.38 -0.02 1.22 16 40 H 0.03 1.25 7.57 -2.39 -0.02 1.24 16 41 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 42 H 0.12 4.45 6.42 -2.91 -0.02 4.43 16 Total: -1.00 -78.82 363.27 3.57 -75.25 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 0.25 Total: 12.07 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: 4.81 Total: -17.45 kcal Atomic # 7 Polarization: -82.19 SS G_CDS: -2.39 Total: -84.58 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: -0.99 Total: -32.46 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.88 Total: 47.17 kcal Total: -78.82 3.57 -75.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411504536.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.361 kcal (2) G-P(sol) polarization free energy of solvation -78.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds