Wall clock time and date at job start Tue Mar 31 2020 16:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.46817 * 2 1 4 4 C 1.38158 * 119.98273 * 100.23121 * 3 2 1 5 5 C 1.38699 * 119.95961 * 180.20720 * 4 3 2 6 6 O 1.35930 * 120.04447 * 179.81368 * 5 4 3 7 7 C 1.42896 * 116.99952 * 179.72839 * 6 5 4 8 8 C 1.53002 * 109.47183 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.46699 * 54.99573 * 8 7 6 10 10 O 1.42902 * 109.46789 * 294.99686 * 8 7 6 11 11 C 1.52994 * 109.47197 * 174.99703 * 8 7 6 12 12 N 1.46903 * 109.46825 * 180.49386 * 11 8 7 13 13 C 1.46900 * 110.99849 * 199.82955 * 12 11 8 14 14 C 1.46894 * 110.99980 * 75.88034 * 12 11 8 15 15 C 1.50698 * 109.47194 * 189.99873 * 14 12 11 16 16 H 1.08002 * 119.99833 * 359.97438 * 15 14 12 17 17 C 1.37877 * 120.00280 * 180.02562 * 15 14 12 18 18 N 1.31517 * 119.99933 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00348 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.46862 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47155 * 119.99545 * 19 17 15 22 22 H 1.48494 * 109.47214 * 239.99632 * 19 17 15 23 23 C 1.38737 * 119.91523 * 359.53998 * 5 4 3 24 24 C 1.38124 * 119.95794 * 0.24974 * 23 5 4 25 25 C 1.38347 * 119.97600 * 279.99893 * 3 2 1 26 26 Cl 1.73602 * 119.95845 * 0.02562 * 25 3 2 27 27 H 1.09005 * 109.46391 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47402 * 299.99647 * 1 2 3 29 29 H 1.08993 * 109.47331 * 60.00321 * 1 2 3 30 30 H 1.08992 * 109.47232 * 239.99963 * 2 1 3 31 31 H 1.08995 * 109.47468 * 119.99152 * 2 1 3 32 32 H 1.08003 * 120.02343 * 0.02647 * 4 3 2 33 33 H 1.09001 * 109.47191 * 59.99804 * 7 6 5 34 34 H 1.09011 * 109.46802 * 299.99744 * 7 6 5 35 35 H 0.96699 * 114.00053 * 299.99796 * 10 8 7 36 36 H 1.08997 * 109.47262 * 60.49695 * 11 8 7 37 37 H 1.08996 * 109.47361 * 300.49067 * 11 8 7 38 38 H 1.09005 * 109.47188 * 54.46255 * 13 12 11 39 39 H 1.09002 * 109.47544 * 174.46267 * 13 12 11 40 40 H 1.08999 * 109.47651 * 294.46539 * 13 12 11 41 41 H 1.09004 * 109.47257 * 309.99539 * 14 12 11 42 42 H 1.08997 * 109.47436 * 69.99927 * 14 12 11 43 43 H 0.96997 * 119.99930 * 180.02562 * 18 17 15 44 44 H 1.08001 * 120.02438 * 180.27132 * 23 5 4 45 45 H 1.07998 * 119.98177 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4628 2.0010 1.1777 5 6 2.9209 3.3101 1.1779 6 8 3.3413 3.8838 2.3362 7 6 3.8056 5.2331 2.2607 8 6 4.2339 5.7038 3.6521 9 1 4.9720 5.0122 4.0584 10 8 3.0940 5.7439 4.5131 11 6 4.8464 7.1022 3.5514 12 7 5.2683 7.5491 4.8857 13 6 5.4168 9.0100 4.9289 14 6 6.5107 6.8814 5.2961 15 6 6.7801 7.1714 6.7501 16 1 6.0970 7.7903 7.3129 17 6 7.8993 6.6476 7.3618 18 7 8.7314 5.8944 6.6763 19 14 8.2330 7.0065 9.1643 20 1 7.1538 7.8718 9.7047 21 1 8.2726 5.7311 9.9239 22 1 9.5380 7.7025 9.2971 23 6 2.9549 4.0315 -0.0067 24 6 2.5277 3.4467 -1.1829 25 6 2.0665 2.1419 -1.1802 26 17 1.5300 1.4091 -2.6597 27 1 -0.3632 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 2.4399 1.4364 2.0981 33 1 3.0044 5.8730 1.8909 34 1 4.6565 5.2871 1.5814 35 1 2.3950 6.3407 4.2126 36 1 4.1056 7.7955 3.1534 37 1 5.7106 7.0734 2.8878 38 1 4.4919 9.4793 4.5935 39 1 5.6336 9.3232 5.9502 40 1 6.2351 9.3116 4.2750 41 1 6.4093 5.8055 5.1530 42 1 7.3389 7.2518 4.6922 43 1 9.5186 5.5255 7.1067 44 1 3.3154 5.0496 -0.0093 45 1 2.5536 4.0080 -2.1052 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414167582.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:13 Heat of formation + Delta-G solvation = -76.033134 kcal Electronic energy + Delta-G solvation = -24978.971789 eV Core-core repulsion = 21215.407514 eV Total energy + Delta-G solvation = -3763.564276 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.139 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.50447 -38.63305 -37.44638 -36.40514 -35.42055 -34.17842 -32.51679 -31.17375 -29.98778 -29.20814 -27.39134 -26.48857 -24.40685 -23.62967 -22.92970 -21.97098 -20.92742 -20.16116 -17.96652 -17.06153 -16.65927 -16.57993 -16.26821 -15.75809 -15.05917 -14.87522 -14.74676 -14.48806 -14.15637 -13.92930 -13.69829 -13.62499 -13.30247 -13.23614 -12.81485 -12.59124 -12.38464 -12.01018 -11.96607 -11.80330 -11.59386 -11.50331 -11.23501 -11.20584 -10.97515 -10.89105 -10.73698 -10.66732 -10.64814 -10.41096 -9.81794 -9.75749 -9.19251 -9.17295 -8.43825 -8.30874 -7.28886 -6.03173 -4.03774 0.92939 1.00551 1.94609 2.94726 3.31734 3.33295 3.39179 3.44242 4.32111 4.41373 4.43269 4.58132 4.68950 4.70452 4.84586 4.97390 4.99884 5.05579 5.14468 5.16868 5.30216 5.32920 5.40867 5.43614 5.54363 5.58689 5.61093 5.66279 5.82644 5.89719 5.94688 6.01468 6.02056 6.10187 6.27050 6.30022 6.34838 6.66808 7.17894 7.24665 7.26081 7.77341 8.00518 8.04957 8.15543 8.51098 9.03506 9.60332 11.08050 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.021806 B = 0.002100 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.728704 B =13329.468870 C =13839.180905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 C -0.032 4.032 4 C -0.142 4.142 5 C 0.147 3.853 6 O -0.295 6.295 7 C 0.027 3.973 8 C 0.118 3.882 9 H 0.114 0.886 10 O -0.532 6.532 11 C 0.029 3.971 12 N -0.530 5.530 13 C 0.040 3.960 14 C 0.191 3.809 15 C -0.504 4.504 16 H 0.064 0.936 17 C 0.054 3.946 18 N -0.900 5.900 19 Si 0.898 3.102 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.286 1.286 23 C -0.207 4.207 24 C -0.065 4.065 25 C -0.078 4.078 26 Cl -0.075 7.075 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.141 0.859 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.362 0.638 36 H 0.063 0.937 37 H 0.036 0.964 38 H 0.043 0.957 39 H 0.075 0.925 40 H 0.011 0.989 41 H 0.031 0.969 42 H -0.010 1.010 43 H 0.261 0.739 44 H 0.136 0.864 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.410 -6.714 -18.651 25.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 C -0.033 4.033 4 C -0.161 4.161 5 C 0.100 3.900 6 O -0.207 6.207 7 C -0.049 4.049 8 C 0.057 3.943 9 H 0.132 0.868 10 O -0.334 6.334 11 C -0.101 4.101 12 N -0.254 5.254 13 C -0.108 4.108 14 C 0.066 3.934 15 C -0.543 4.543 16 H 0.082 0.918 17 C -0.147 4.147 18 N -0.540 5.540 19 Si 0.726 3.274 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.212 1.212 23 C -0.226 4.226 24 C -0.084 4.084 25 C -0.105 4.105 26 Cl -0.046 7.046 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.159 0.841 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.208 0.792 36 H 0.082 0.918 37 H 0.054 0.946 38 H 0.062 0.938 39 H 0.094 0.906 40 H 0.030 0.970 41 H 0.049 0.951 42 H 0.008 0.992 43 H 0.070 0.930 44 H 0.154 0.846 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.282 -7.510 -17.870 24.683 hybrid contribution 0.791 0.977 -0.395 1.318 sum -14.492 -6.533 -18.265 24.214 Atomic orbital electron populations 1.21736 0.94135 1.02059 1.02533 1.20612 0.96750 0.91544 1.03645 1.19521 0.96630 0.96454 0.90733 1.20291 1.04045 0.93219 0.98523 1.19156 0.92832 0.92523 0.85462 1.86229 1.77030 1.28710 1.28768 1.23784 0.99137 0.80857 1.01119 1.21946 0.89022 0.96939 0.86344 0.86839 1.86741 1.28341 1.67550 1.50786 1.22563 0.99099 0.95335 0.93077 1.61993 1.36673 1.05450 1.21318 1.22208 0.97830 0.88534 1.02231 1.19816 0.83186 0.94312 0.96092 1.21171 1.07171 1.30881 0.95047 0.91766 1.24995 0.96094 0.95256 0.98379 1.69962 1.13515 1.34102 1.36373 0.86432 0.77945 0.78102 0.84898 1.19639 1.20963 1.21182 1.21227 1.07789 1.01527 0.92025 1.20788 0.96333 0.92863 0.98439 1.20583 1.07933 0.94689 0.87311 1.98339 1.88993 1.83058 1.34218 0.92094 0.92367 0.92200 0.90178 0.90337 0.84142 0.91719 0.91053 0.79218 0.91804 0.94560 0.93784 0.90601 0.97024 0.95060 0.99212 0.92984 0.84589 0.84821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.84 37.16 0.37 -0.71 16 2 C -0.09 -0.71 5.52 -27.88 -0.15 -0.87 16 3 C -0.03 -0.33 5.14 -104.61 -0.54 -0.86 16 4 C -0.14 -1.60 9.61 -39.44 -0.38 -1.98 16 5 C 0.15 1.79 6.69 -39.23 -0.26 1.53 16 6 O -0.29 -4.13 10.10 -24.37 -0.25 -4.38 16 7 C 0.03 0.33 4.37 37.16 0.16 0.49 16 8 C 0.12 1.86 3.31 -26.73 -0.09 1.77 16 9 H 0.11 2.18 6.78 -51.93 -0.35 1.82 16 10 O -0.53 -8.88 13.18 -40.08 -0.53 -9.41 16 11 C 0.03 0.47 4.66 -3.83 -0.02 0.45 16 12 N -0.53 -11.09 4.56 -244.38 -1.11 -12.20 16 13 C 0.04 0.76 9.31 60.06 0.56 1.31 16 14 C 0.19 4.91 4.55 -4.98 -0.02 4.89 16 15 C -0.50 -14.21 8.54 -34.44 -0.29 -14.50 16 16 H 0.06 1.80 7.10 -52.49 -0.37 1.43 16 17 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 18 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 19 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 C -0.21 -2.14 9.04 -39.44 -0.36 -2.50 16 24 C -0.07 -0.63 9.82 -39.57 -0.39 -1.02 16 25 C -0.08 -0.79 6.31 -39.49 -0.25 -1.04 16 26 Cl -0.07 -0.67 26.61 -51.86 -1.38 -2.05 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.46 7.25 -51.93 -0.38 0.09 16 30 H 0.08 0.62 7.35 -51.93 -0.38 0.24 16 31 H 0.08 0.57 8.00 -51.93 -0.42 0.15 16 32 H 0.14 1.48 8.03 -52.48 -0.42 1.06 16 33 H 0.06 0.63 7.66 -51.93 -0.40 0.23 16 34 H 0.07 0.78 7.66 -51.92 -0.40 0.39 16 35 H 0.36 4.43 9.05 45.56 0.41 4.84 16 36 H 0.06 0.84 7.80 -51.93 -0.41 0.43 16 37 H 0.04 0.58 8.00 -51.93 -0.42 0.17 16 38 H 0.04 0.68 7.94 -51.93 -0.41 0.26 16 39 H 0.08 1.53 6.90 -51.93 -0.36 1.17 16 40 H 0.01 0.21 8.13 -51.93 -0.42 -0.21 16 41 H 0.03 0.86 6.63 -51.93 -0.34 0.52 16 42 H -0.01 -0.27 8.11 -51.93 -0.42 -0.69 16 43 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.14 1.18 6.30 -52.49 -0.33 0.85 16 45 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 382.10 15.07 5.76 5.76 Total: -1.00 -32.03 382.10 -9.77 -41.80 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -6.22 Total: 1.34 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -1.76 Total: -11.60 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: -0.38 Total: -38.24 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -0.77 Total: -13.79 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.38 Total: -2.05 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.03 -9.77 -41.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414167582.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.233 kcal (2) G-P(sol) polarization free energy of solvation -32.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds