Wall clock time and date at job start Tue Mar 31 2020 16:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.46817 * 2 1 4 4 C 1.38158 * 119.98273 * 100.23121 * 3 2 1 5 5 C 1.38699 * 119.95961 * 180.20720 * 4 3 2 6 6 O 1.35930 * 120.04447 * 179.81368 * 5 4 3 7 7 C 1.42896 * 116.99952 * 179.72839 * 6 5 4 8 8 C 1.53002 * 109.47183 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.46699 * 54.99573 * 8 7 6 10 10 O 1.42902 * 109.46789 * 294.99686 * 8 7 6 11 11 C 1.52994 * 109.47197 * 174.99703 * 8 7 6 12 12 N 1.46903 * 109.46825 * 180.49386 * 11 8 7 13 13 C 1.46900 * 110.99849 * 199.82955 * 12 11 8 14 14 C 1.46894 * 110.99980 * 75.88034 * 12 11 8 15 15 C 1.50698 * 109.47194 * 189.99873 * 14 12 11 16 16 H 1.08002 * 119.99833 * 359.97438 * 15 14 12 17 17 C 1.37877 * 120.00280 * 180.02562 * 15 14 12 18 18 N 1.31517 * 119.99933 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00348 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.46862 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47155 * 119.99545 * 19 17 15 22 22 H 1.48494 * 109.47214 * 239.99632 * 19 17 15 23 23 C 1.38737 * 119.91523 * 359.53998 * 5 4 3 24 24 C 1.38124 * 119.95794 * 0.24974 * 23 5 4 25 25 C 1.38347 * 119.97600 * 279.99893 * 3 2 1 26 26 Cl 1.73602 * 119.95845 * 0.02562 * 25 3 2 27 27 H 1.09005 * 109.46391 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47402 * 299.99647 * 1 2 3 29 29 H 1.08993 * 109.47331 * 60.00321 * 1 2 3 30 30 H 1.08992 * 109.47232 * 239.99963 * 2 1 3 31 31 H 1.08995 * 109.47468 * 119.99152 * 2 1 3 32 32 H 1.08003 * 120.02343 * 0.02647 * 4 3 2 33 33 H 1.09001 * 109.47191 * 59.99804 * 7 6 5 34 34 H 1.09011 * 109.46802 * 299.99744 * 7 6 5 35 35 H 0.96699 * 114.00053 * 299.99796 * 10 8 7 36 36 H 1.08997 * 109.47262 * 60.49695 * 11 8 7 37 37 H 1.08996 * 109.47361 * 300.49067 * 11 8 7 38 38 H 1.09005 * 109.47188 * 54.46255 * 13 12 11 39 39 H 1.09002 * 109.47544 * 174.46267 * 13 12 11 40 40 H 1.08999 * 109.47651 * 294.46539 * 13 12 11 41 41 H 1.09004 * 109.47257 * 309.99539 * 14 12 11 42 42 H 1.08997 * 109.47436 * 69.99927 * 14 12 11 43 43 H 0.96997 * 119.99930 * 180.02562 * 18 17 15 44 44 H 1.08001 * 120.02438 * 180.27132 * 23 5 4 45 45 H 1.07998 * 119.98177 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4628 2.0010 1.1777 5 6 2.9209 3.3101 1.1779 6 8 3.3413 3.8838 2.3362 7 6 3.8056 5.2331 2.2607 8 6 4.2339 5.7038 3.6521 9 1 4.9720 5.0122 4.0584 10 8 3.0940 5.7439 4.5131 11 6 4.8464 7.1022 3.5514 12 7 5.2683 7.5491 4.8857 13 6 5.4168 9.0100 4.9289 14 6 6.5107 6.8814 5.2961 15 6 6.7801 7.1714 6.7501 16 1 6.0970 7.7903 7.3129 17 6 7.8993 6.6476 7.3618 18 7 8.7314 5.8944 6.6763 19 14 8.2330 7.0065 9.1643 20 1 7.1538 7.8718 9.7047 21 1 8.2726 5.7311 9.9239 22 1 9.5380 7.7025 9.2971 23 6 2.9549 4.0315 -0.0067 24 6 2.5277 3.4467 -1.1829 25 6 2.0665 2.1419 -1.1802 26 17 1.5300 1.4091 -2.6597 27 1 -0.3632 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 2.4399 1.4364 2.0981 33 1 3.0044 5.8730 1.8909 34 1 4.6565 5.2871 1.5814 35 1 2.3950 6.3407 4.2126 36 1 4.1056 7.7955 3.1534 37 1 5.7106 7.0734 2.8878 38 1 4.4919 9.4793 4.5935 39 1 5.6336 9.3232 5.9502 40 1 6.2351 9.3116 4.2750 41 1 6.4093 5.8055 5.1530 42 1 7.3389 7.2518 4.6922 43 1 9.5186 5.5255 7.1067 44 1 3.3154 5.0496 -0.0093 45 1 2.5536 4.0080 -2.1052 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414167582.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:12 Heat of formation + Delta-G solvation = -97.454535 kcal Electronic energy + Delta-G solvation = -24979.900691 eV Core-core repulsion = 21215.407514 eV Total energy + Delta-G solvation = -3764.493177 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.139 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.37135 -39.67977 -38.65783 -37.24176 -36.84980 -34.87913 -34.61851 -32.20930 -30.99767 -30.00063 -29.35875 -27.72577 -25.70070 -24.90434 -23.72061 -23.29622 -21.84545 -21.67116 -18.86022 -18.59494 -18.01538 -17.53963 -17.41553 -16.87126 -16.65067 -16.10749 -15.93275 -15.67717 -15.34999 -15.03509 -14.86033 -14.67818 -14.40146 -14.21067 -13.97393 -13.92215 -13.52310 -13.14712 -13.06916 -12.96159 -12.76297 -12.62321 -12.56930 -12.55154 -12.37433 -12.29756 -12.11835 -11.85868 -11.61855 -11.55706 -11.45546 -11.31608 -10.91105 -10.61973 -9.95932 -9.14043 -8.97304 -8.21401 -6.30470 0.14879 0.20041 1.19065 1.39314 1.40919 1.54084 2.00653 2.40074 2.53747 3.11313 3.25533 3.53769 3.66285 3.68922 3.85908 3.93436 3.98378 4.13008 4.21065 4.26946 4.31800 4.35720 4.42545 4.46012 4.55823 4.63485 4.71657 4.77500 4.87202 4.94462 5.00414 5.03263 5.09046 5.11283 5.18635 5.21466 5.30386 5.35065 5.36768 5.56400 5.64739 6.05541 6.32046 6.33650 6.62897 6.85702 7.00792 7.38990 8.90007 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.021806 B = 0.002100 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.728704 B =13329.468870 C =13839.180905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 C -0.035 4.035 4 C -0.157 4.157 5 C 0.126 3.874 6 O -0.323 6.323 7 C 0.036 3.964 8 C 0.123 3.877 9 H 0.065 0.935 10 O -0.556 6.556 11 C 0.030 3.970 12 N -0.544 5.544 13 C 0.042 3.958 14 C 0.207 3.793 15 C -0.521 4.521 16 H 0.062 0.938 17 C -0.001 4.001 18 N -0.935 5.935 19 Si 0.968 3.032 20 H -0.263 1.263 21 H -0.280 1.280 22 H -0.277 1.277 23 C -0.206 4.206 24 C -0.066 4.066 25 C -0.086 4.086 26 Cl -0.065 7.065 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.138 0.862 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.383 0.617 36 H 0.108 0.892 37 H 0.037 0.963 38 H 0.086 0.914 39 H 0.053 0.947 40 H 0.011 0.989 41 H 0.002 0.998 42 H -0.037 1.037 43 H 0.264 0.736 44 H 0.155 0.845 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.836 -5.773 -19.741 26.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.126 4.126 3 C -0.036 4.036 4 C -0.176 4.176 5 C 0.080 3.920 6 O -0.236 6.236 7 C -0.039 4.039 8 C 0.062 3.938 9 H 0.084 0.916 10 O -0.362 6.362 11 C -0.099 4.099 12 N -0.268 5.268 13 C -0.106 4.106 14 C 0.081 3.919 15 C -0.559 4.559 16 H 0.080 0.920 17 C -0.199 4.199 18 N -0.576 5.576 19 Si 0.793 3.207 20 H -0.187 1.187 21 H -0.206 1.206 22 H -0.202 1.202 23 C -0.224 4.224 24 C -0.084 4.084 25 C -0.112 4.112 26 Cl -0.037 7.037 27 H 0.094 0.906 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.156 0.844 33 H 0.117 0.883 34 H 0.101 0.899 35 H 0.231 0.769 36 H 0.126 0.874 37 H 0.055 0.945 38 H 0.105 0.895 39 H 0.072 0.928 40 H 0.030 0.970 41 H 0.020 0.980 42 H -0.019 1.019 43 H 0.073 0.927 44 H 0.173 0.827 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -16.737 -6.551 -18.983 26.142 hybrid contribution 1.162 0.647 -0.143 1.338 sum -15.575 -5.904 -19.126 25.362 Atomic orbital electron populations 1.21715 0.93467 1.02898 1.02063 1.20673 0.97266 0.90523 1.04141 1.19716 0.96168 0.97313 0.90402 1.20422 1.04748 0.93380 0.99037 1.19360 0.93990 0.93064 0.85580 1.86169 1.77719 1.29554 1.30187 1.23645 1.00761 0.80922 0.98583 1.21694 0.88095 0.95888 0.88075 0.91646 1.86684 1.29127 1.68553 1.51856 1.22669 1.00124 0.96398 0.90663 1.61857 1.33648 1.06596 1.24679 1.22231 1.00015 0.87205 1.01167 1.19416 0.84633 0.92969 0.94896 1.21512 1.07295 1.30773 0.96363 0.92030 1.25924 0.95879 0.94955 1.03152 1.70085 1.14071 1.35074 1.38388 0.85346 0.78173 0.78080 0.79101 1.18725 1.20594 1.20212 1.21427 1.07332 1.02255 0.91419 1.21073 0.95458 0.92816 0.99082 1.20772 1.07735 0.95078 0.87665 1.98342 1.88865 1.82957 1.33490 0.90635 0.92873 0.92575 0.89738 0.89782 0.84445 0.88305 0.89869 0.76885 0.87382 0.94453 0.89535 0.92776 0.97041 0.97964 1.01929 0.92741 0.82700 0.82622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.84 71.98 0.71 -1.24 16 2 C -0.09 -1.36 5.52 29.85 0.16 -1.19 16 3 C -0.04 -0.68 5.14 -19.86 -0.10 -0.78 16 4 C -0.16 -3.55 9.61 22.36 0.21 -3.34 16 5 C 0.13 3.00 6.69 22.50 0.15 3.15 16 6 O -0.32 -9.04 10.10 -88.12 -0.89 -9.93 16 7 C 0.04 0.84 4.37 71.98 0.31 1.15 16 8 C 0.12 3.89 3.31 30.59 0.10 3.99 16 9 H 0.07 2.69 6.78 -2.39 -0.02 2.68 16 10 O -0.56 -18.38 13.18 -144.34 -1.90 -20.28 16 11 C 0.03 0.94 4.66 86.30 0.40 1.34 16 12 N -0.54 -22.69 4.56 -927.07 -4.23 -26.91 16 13 C 0.04 1.51 9.31 127.69 1.19 2.70 16 14 C 0.21 11.08 4.55 85.56 0.39 11.47 16 15 C -0.52 -30.09 8.54 25.60 0.22 -29.87 16 16 H 0.06 3.51 7.10 -2.91 -0.02 3.49 16 17 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 18 N -0.94 -57.19 13.29 21.45 0.28 -56.90 16 19 Si 0.97 45.18 29.54 68.60 2.03 47.21 16 20 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 21 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 23 C -0.21 -3.87 9.04 22.36 0.20 -3.67 16 24 C -0.07 -1.13 9.82 22.28 0.22 -0.91 16 25 C -0.09 -1.60 6.31 22.33 0.14 -1.46 16 26 Cl -0.07 -1.07 26.61 -2.72 -0.07 -1.14 16 27 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 28 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.80 7.25 -2.39 -0.02 0.78 16 30 H 0.08 1.21 7.35 -2.39 -0.02 1.19 16 31 H 0.08 1.17 8.00 -2.39 -0.02 1.15 16 32 H 0.14 3.04 8.03 -2.91 -0.02 3.01 16 33 H 0.10 1.59 7.66 -2.39 -0.02 1.58 16 34 H 0.08 1.70 7.66 -2.38 -0.02 1.68 16 35 H 0.38 8.64 9.05 -74.06 -0.67 7.97 16 36 H 0.11 2.42 7.80 -2.39 -0.02 2.40 16 37 H 0.04 1.17 8.00 -2.39 -0.02 1.15 16 38 H 0.09 2.37 7.94 -2.38 -0.02 2.35 16 39 H 0.05 2.16 6.90 -2.39 -0.02 2.14 16 40 H 0.01 0.40 8.13 -2.39 -0.02 0.38 16 41 H 0.00 0.13 6.63 -2.38 -0.02 0.12 16 42 H -0.04 -2.12 8.11 -2.39 -0.02 -2.14 16 43 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 44 H 0.16 2.22 6.30 -2.91 -0.02 2.20 16 45 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -71.62 382.10 0.32 -71.30 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.32 Total: 14.94 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: 4.77 Total: -18.29 kcal Atomic # 7 Polarization: -79.88 SS G_CDS: -3.94 Total: -83.82 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -2.79 Total: -30.21 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -0.07 Total: -1.14 kcal Total: -71.62 0.32 -71.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414167582.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.156 kcal (2) G-P(sol) polarization free energy of solvation -71.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds