Wall clock time and date at job start Tue Mar 31 2020 16:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.47510 * 2 1 4 4 C 1.38163 * 119.98114 * 99.99717 * 3 2 1 5 5 C 1.38697 * 119.95636 * 180.02562 * 4 3 2 6 6 O 1.35918 * 120.04639 * 179.97438 * 5 4 3 7 7 C 1.42895 * 117.00505 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.47377 * 180.02562 * 7 6 5 9 9 H 1.09005 * 109.46933 * 305.00052 * 8 7 6 10 10 O 1.42900 * 109.47196 * 64.99828 * 8 7 6 11 11 C 1.52994 * 109.47516 * 185.00291 * 8 7 6 12 12 N 1.46892 * 109.47524 * 178.50707 * 11 8 7 13 13 C 1.46906 * 111.00201 * 164.00708 * 12 11 8 14 14 C 1.46900 * 110.99901 * 287.96332 * 12 11 8 15 15 C 1.50704 * 109.47231 * 169.99935 * 14 12 11 16 16 H 1.08007 * 120.00030 * 0.02562 * 15 14 12 17 17 C 1.37874 * 120.00191 * 179.97438 * 15 14 12 18 18 N 1.31515 * 119.99828 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99887 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47440 * 90.00015 * 19 17 15 21 21 H 1.48499 * 109.46849 * 210.00060 * 19 17 15 22 22 H 1.48503 * 109.47047 * 329.99472 * 19 17 15 23 23 C 1.38746 * 119.91407 * 359.97438 * 5 4 3 24 24 C 1.38119 * 119.95748 * 0.25423 * 23 5 4 25 25 C 1.38343 * 119.97297 * 280.02259 * 3 2 1 26 26 Cl 1.73598 * 119.96014 * 359.97438 * 25 3 2 27 27 H 1.09000 * 109.47084 * 300.00551 * 1 2 3 28 28 H 1.08998 * 109.46842 * 60.00077 * 1 2 3 29 29 H 1.08999 * 109.47360 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47084 * 239.99449 * 2 1 3 31 31 H 1.09007 * 109.46774 * 119.99674 * 2 1 3 32 32 H 1.07995 * 120.01666 * 0.02562 * 4 3 2 33 33 H 1.09004 * 109.47156 * 299.99699 * 7 6 5 34 34 H 1.09001 * 109.47050 * 60.00020 * 7 6 5 35 35 H 0.96698 * 114.00283 * 60.00644 * 10 8 7 36 36 H 1.09006 * 109.46793 * 298.50588 * 11 8 7 37 37 H 1.09004 * 109.47476 * 58.50162 * 11 8 7 38 38 H 1.08996 * 109.47028 * 65.48621 * 13 12 11 39 39 H 1.09002 * 109.47067 * 185.48707 * 13 12 11 40 40 H 1.08996 * 109.47056 * 305.48328 * 13 12 11 41 41 H 1.08998 * 109.47109 * 289.99307 * 14 12 11 42 42 H 1.08993 * 109.47034 * 49.99856 * 14 12 11 43 43 H 0.97007 * 119.99767 * 180.02562 * 18 17 15 44 44 H 1.08004 * 120.01937 * 179.97438 * 23 5 4 45 45 H 1.08006 * 119.97856 * 179.74914 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4585 2.0025 1.1786 5 6 2.9203 3.3103 1.1781 6 8 3.3394 3.8845 2.3366 7 6 3.8016 5.2345 2.2615 8 6 4.2286 5.7056 3.6531 9 1 3.4041 5.5667 4.3525 10 8 5.3563 4.9437 4.0888 11 6 4.6053 7.1874 3.5967 12 7 4.9810 7.6486 4.9398 13 6 5.7003 8.9279 4.8751 14 6 3.8020 7.7510 5.8102 15 6 4.2456 7.9852 7.2313 16 1 5.2981 8.0518 7.4645 17 6 3.3079 8.1155 8.2336 18 7 3.6950 8.3194 9.4738 19 14 1.4876 8.0009 7.8302 20 1 1.0442 6.5879 7.9395 21 1 0.7156 8.8372 8.7841 22 1 1.2557 8.4869 6.4462 23 6 2.9539 4.0318 -0.0066 24 6 2.5227 3.4484 -1.1819 25 6 2.0662 2.1420 -1.1801 26 17 1.5304 1.4089 -2.6597 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.4319 1.4391 2.0996 33 1 4.6526 5.2900 1.5826 34 1 2.9994 5.8731 1.8916 35 1 6.1289 5.0199 3.5123 36 1 5.4470 7.3227 2.9174 37 1 3.7533 7.7656 3.2391 38 1 5.0302 9.7031 4.5034 39 1 6.0514 9.1981 5.8710 40 1 6.5529 8.8317 4.2030 41 1 3.1794 8.5833 5.4822 42 1 3.2292 6.8253 5.7563 43 1 3.0352 8.4107 10.1791 44 1 3.3129 5.0504 -0.0088 45 1 2.5450 4.0110 -2.1035 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414167583.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:17 Heat of formation + Delta-G solvation = -70.891251 kcal Electronic energy + Delta-G solvation = -25096.444180 eV Core-core repulsion = 21333.102873 eV Total energy + Delta-G solvation = -3763.341307 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.139 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.57737 -38.72856 -37.57585 -36.46574 -35.54259 -34.22892 -32.46947 -31.25853 -30.08354 -29.27581 -28.07813 -26.58097 -24.43880 -23.51494 -22.98997 -21.97050 -20.99986 -20.07264 -18.04351 -17.22604 -16.81980 -16.68638 -16.53107 -15.81735 -15.11258 -15.01486 -14.88220 -14.37641 -14.22982 -14.00059 -13.88463 -13.64927 -13.36010 -13.14970 -12.88738 -12.82958 -12.42683 -12.36293 -11.97412 -11.94602 -11.67290 -11.64467 -11.42466 -11.25955 -11.13850 -10.96074 -10.81325 -10.74293 -10.54009 -10.25577 -9.95595 -9.79735 -9.26958 -9.24916 -8.56802 -8.37393 -7.43963 -6.05200 -4.02340 0.86883 0.94412 1.89509 2.85921 3.27129 3.27863 3.34725 3.35302 4.25927 4.35989 4.41016 4.45224 4.58060 4.64207 4.78302 4.87873 4.92053 5.01228 5.04510 5.09654 5.18010 5.24842 5.29276 5.36172 5.42437 5.54059 5.56277 5.61669 5.74485 5.77332 5.91192 5.94159 5.95347 6.04666 6.16494 6.16910 6.27026 6.60043 6.79200 6.91147 7.13257 7.55021 7.79551 7.94564 7.97726 8.63882 9.03602 9.56066 11.07994 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.018239 B = 0.002344 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.818048 B =11944.097452 C =12747.202856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.032 4.032 4 C -0.142 4.142 5 C 0.146 3.854 6 O -0.295 6.295 7 C 0.026 3.974 8 C 0.116 3.884 9 H 0.112 0.888 10 O -0.530 6.530 11 C 0.026 3.974 12 N -0.520 5.520 13 C 0.039 3.961 14 C 0.160 3.840 15 C -0.507 4.507 16 H 0.081 0.919 17 C 0.068 3.932 18 N -0.899 5.899 19 Si 0.873 3.127 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.269 1.269 23 C -0.207 4.207 24 C -0.065 4.065 25 C -0.078 4.078 26 Cl -0.074 7.074 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.141 0.859 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.365 0.635 36 H 0.069 0.931 37 H 0.035 0.965 38 H 0.012 0.988 39 H 0.081 0.919 40 H 0.047 0.953 41 H -0.012 1.012 42 H 0.025 0.975 43 H 0.264 0.736 44 H 0.136 0.864 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.260 -12.427 -25.296 28.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 C -0.033 4.033 4 C -0.161 4.161 5 C 0.099 3.901 6 O -0.208 6.208 7 C -0.050 4.050 8 C 0.055 3.945 9 H 0.129 0.871 10 O -0.333 6.333 11 C -0.103 4.103 12 N -0.244 5.244 13 C -0.109 4.109 14 C 0.034 3.966 15 C -0.545 4.545 16 H 0.099 0.901 17 C -0.133 4.133 18 N -0.538 5.538 19 Si 0.700 3.300 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.194 1.194 23 C -0.226 4.226 24 C -0.084 4.084 25 C -0.105 4.105 26 Cl -0.045 7.045 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.159 0.841 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.210 0.790 36 H 0.087 0.913 37 H 0.053 0.947 38 H 0.031 0.969 39 H 0.100 0.900 40 H 0.066 0.934 41 H 0.005 0.995 42 H 0.043 0.957 43 H 0.073 0.927 44 H 0.154 0.846 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.461 -13.035 -24.331 27.819 hybrid contribution -1.261 1.026 -1.260 2.057 sum -4.722 -12.009 -25.590 28.660 Atomic orbital electron populations 1.21741 0.94095 1.02111 1.02579 1.20617 0.96785 0.91499 1.03637 1.19532 0.96573 0.96497 0.90706 1.20294 1.04013 0.93243 0.98517 1.19146 0.92928 0.92555 0.85424 1.86220 1.77081 1.28642 1.28847 1.23775 0.99336 0.81056 1.00789 1.21950 0.90504 0.89881 0.92146 0.87075 1.86751 1.22908 1.69842 1.53764 1.22624 0.99548 0.94582 0.93587 1.61823 1.26698 1.28766 1.07126 1.22240 0.96546 0.89387 1.02719 1.20264 0.87626 0.94998 0.93724 1.20992 0.95805 1.48569 0.89142 0.90064 1.24895 0.98589 0.94911 0.94937 1.69891 1.34066 1.49915 0.99977 0.86902 0.86116 0.78572 0.78418 1.19992 1.21145 1.19420 1.21224 1.07848 1.01447 0.92057 1.20792 0.96317 0.92844 0.98467 1.20589 1.07852 0.94646 0.87375 1.98341 1.89000 1.83030 1.34139 0.92349 0.92183 0.92046 0.90160 0.90334 0.84127 0.91537 0.91103 0.78976 0.91253 0.94710 0.96937 0.90001 0.93434 0.99481 0.95714 0.92655 0.84599 0.84791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.84 37.16 0.37 -0.71 16 2 C -0.09 -0.68 5.52 -27.88 -0.15 -0.83 16 3 C -0.03 -0.31 5.14 -104.61 -0.54 -0.85 16 4 C -0.14 -1.53 9.61 -39.44 -0.38 -1.91 16 5 C 0.15 1.69 6.69 -39.22 -0.26 1.43 16 6 O -0.30 -3.93 10.10 -24.33 -0.25 -4.18 16 7 C 0.03 0.30 4.37 37.16 0.16 0.46 16 8 C 0.12 1.72 3.27 -26.73 -0.09 1.63 16 9 H 0.11 1.97 6.55 -51.93 -0.34 1.63 16 10 O -0.53 -8.55 13.20 -40.08 -0.53 -9.08 16 11 C 0.03 0.39 4.63 -3.83 -0.02 0.38 16 12 N -0.52 -10.49 4.60 -244.38 -1.12 -11.61 16 13 C 0.04 0.72 9.33 60.07 0.56 1.28 16 14 C 0.16 3.83 3.64 -4.97 -0.02 3.81 16 15 C -0.51 -14.43 9.09 -34.44 -0.31 -14.74 16 16 H 0.08 2.52 7.34 -52.48 -0.39 2.13 16 17 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 18 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 19 Si 0.87 21.52 27.47 -169.99 -4.67 16.85 16 20 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 22 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 23 C -0.21 -2.02 9.04 -39.44 -0.36 -2.38 16 24 C -0.07 -0.60 9.82 -39.57 -0.39 -0.99 16 25 C -0.08 -0.75 6.31 -39.49 -0.25 -1.00 16 26 Cl -0.07 -0.64 26.61 -51.86 -1.38 -2.02 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.46 7.25 -51.93 -0.38 0.08 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.59 7.35 -51.93 -0.38 0.21 16 31 H 0.08 0.54 8.00 -51.93 -0.42 0.12 16 32 H 0.14 1.42 8.04 -52.49 -0.42 1.00 16 33 H 0.07 0.60 7.66 -51.93 -0.40 0.20 16 34 H 0.07 0.71 7.66 -51.93 -0.40 0.31 16 35 H 0.36 4.26 9.05 45.56 0.41 4.67 16 36 H 0.07 0.85 7.88 -51.93 -0.41 0.44 16 37 H 0.03 0.51 8.05 -51.93 -0.42 0.09 16 38 H 0.01 0.21 8.13 -51.93 -0.42 -0.21 16 39 H 0.08 1.68 6.90 -51.93 -0.36 1.32 16 40 H 0.05 0.71 7.97 -51.93 -0.41 0.30 16 41 H -0.01 -0.30 7.17 -51.93 -0.37 -0.67 16 42 H 0.02 0.60 5.81 -51.93 -0.30 0.30 16 43 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.14 1.09 6.30 -52.48 -0.33 0.76 16 45 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 LS Contribution 378.21 15.07 5.70 5.70 Total: -1.00 -32.73 378.21 -9.41 -42.15 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -6.17 Total: 1.60 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -1.77 Total: -12.53 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: -0.35 Total: -38.50 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: -0.77 Total: -13.25 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.38 Total: -2.02 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.73 -9.41 -42.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414167583.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.746 kcal (2) G-P(sol) polarization free energy of solvation -32.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds