Wall clock time and date at job start Tue Mar 31 2020 16:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.47510 * 2 1 4 4 C 1.38163 * 119.98114 * 99.99717 * 3 2 1 5 5 C 1.38697 * 119.95636 * 180.02562 * 4 3 2 6 6 O 1.35918 * 120.04639 * 179.97438 * 5 4 3 7 7 C 1.42895 * 117.00505 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.47377 * 180.02562 * 7 6 5 9 9 H 1.09005 * 109.46933 * 305.00052 * 8 7 6 10 10 O 1.42900 * 109.47196 * 64.99828 * 8 7 6 11 11 C 1.52994 * 109.47516 * 185.00291 * 8 7 6 12 12 N 1.46892 * 109.47524 * 178.50707 * 11 8 7 13 13 C 1.46906 * 111.00201 * 164.00708 * 12 11 8 14 14 C 1.46900 * 110.99901 * 287.96332 * 12 11 8 15 15 C 1.50704 * 109.47231 * 169.99935 * 14 12 11 16 16 H 1.08007 * 120.00030 * 0.02562 * 15 14 12 17 17 C 1.37874 * 120.00191 * 179.97438 * 15 14 12 18 18 N 1.31515 * 119.99828 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99887 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47440 * 90.00015 * 19 17 15 21 21 H 1.48499 * 109.46849 * 210.00060 * 19 17 15 22 22 H 1.48503 * 109.47047 * 329.99472 * 19 17 15 23 23 C 1.38746 * 119.91407 * 359.97438 * 5 4 3 24 24 C 1.38119 * 119.95748 * 0.25423 * 23 5 4 25 25 C 1.38343 * 119.97297 * 280.02259 * 3 2 1 26 26 Cl 1.73598 * 119.96014 * 359.97438 * 25 3 2 27 27 H 1.09000 * 109.47084 * 300.00551 * 1 2 3 28 28 H 1.08998 * 109.46842 * 60.00077 * 1 2 3 29 29 H 1.08999 * 109.47360 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47084 * 239.99449 * 2 1 3 31 31 H 1.09007 * 109.46774 * 119.99674 * 2 1 3 32 32 H 1.07995 * 120.01666 * 0.02562 * 4 3 2 33 33 H 1.09004 * 109.47156 * 299.99699 * 7 6 5 34 34 H 1.09001 * 109.47050 * 60.00020 * 7 6 5 35 35 H 0.96698 * 114.00283 * 60.00644 * 10 8 7 36 36 H 1.09006 * 109.46793 * 298.50588 * 11 8 7 37 37 H 1.09004 * 109.47476 * 58.50162 * 11 8 7 38 38 H 1.08996 * 109.47028 * 65.48621 * 13 12 11 39 39 H 1.09002 * 109.47067 * 185.48707 * 13 12 11 40 40 H 1.08996 * 109.47056 * 305.48328 * 13 12 11 41 41 H 1.08998 * 109.47109 * 289.99307 * 14 12 11 42 42 H 1.08993 * 109.47034 * 49.99856 * 14 12 11 43 43 H 0.97007 * 119.99767 * 180.02562 * 18 17 15 44 44 H 1.08004 * 120.01937 * 179.97438 * 23 5 4 45 45 H 1.08006 * 119.97856 * 179.74914 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4585 2.0025 1.1786 5 6 2.9203 3.3103 1.1781 6 8 3.3394 3.8845 2.3366 7 6 3.8016 5.2345 2.2615 8 6 4.2286 5.7056 3.6531 9 1 3.4041 5.5667 4.3525 10 8 5.3563 4.9437 4.0888 11 6 4.6053 7.1874 3.5967 12 7 4.9810 7.6486 4.9398 13 6 5.7003 8.9279 4.8751 14 6 3.8020 7.7510 5.8102 15 6 4.2456 7.9852 7.2313 16 1 5.2981 8.0518 7.4645 17 6 3.3079 8.1155 8.2336 18 7 3.6950 8.3194 9.4738 19 14 1.4876 8.0009 7.8302 20 1 1.0442 6.5879 7.9395 21 1 0.7156 8.8372 8.7841 22 1 1.2557 8.4869 6.4462 23 6 2.9539 4.0318 -0.0066 24 6 2.5227 3.4484 -1.1819 25 6 2.0662 2.1420 -1.1801 26 17 1.5304 1.4089 -2.6597 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.4319 1.4391 2.0996 33 1 4.6526 5.2900 1.5826 34 1 2.9994 5.8731 1.8916 35 1 6.1289 5.0199 3.5123 36 1 5.4470 7.3227 2.9174 37 1 3.7533 7.7656 3.2391 38 1 5.0302 9.7031 4.5034 39 1 6.0514 9.1981 5.8710 40 1 6.5529 8.8317 4.2030 41 1 3.1794 8.5833 5.4822 42 1 3.2292 6.8253 5.7563 43 1 3.0352 8.4107 10.1791 44 1 3.3129 5.0504 -0.0088 45 1 2.5450 4.0110 -2.1035 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414167583.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:16 Heat of formation + Delta-G solvation = -93.820032 kcal Electronic energy + Delta-G solvation = -25097.438447 eV Core-core repulsion = 21333.102873 eV Total energy + Delta-G solvation = -3764.335574 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.139 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.37211 -39.70876 -38.69567 -37.25223 -36.86575 -34.88224 -34.60401 -32.22938 -31.04609 -30.09266 -29.87762 -27.72694 -25.51787 -24.82542 -23.72014 -23.22727 -21.79727 -21.60838 -19.11933 -18.77177 -18.01745 -17.57179 -17.42213 -16.84090 -16.59200 -16.19640 -15.79358 -15.72042 -15.56136 -15.00883 -14.75927 -14.65826 -14.48495 -14.34742 -14.18762 -14.04961 -13.52339 -13.26589 -13.07538 -13.05383 -12.72461 -12.70066 -12.59413 -12.41976 -12.38122 -12.19882 -11.88044 -11.86091 -11.71881 -11.55934 -11.52707 -11.40635 -10.92033 -10.78300 -9.95999 -9.13943 -8.98238 -8.28858 -6.31575 0.14869 0.20064 1.19316 1.32284 1.34134 1.43412 2.00371 2.32709 2.53762 3.04023 3.19309 3.54568 3.65207 3.68748 3.83908 3.93127 3.97651 4.12180 4.20034 4.26516 4.31926 4.35900 4.41727 4.45355 4.50504 4.61790 4.69455 4.70972 4.86817 4.89060 4.93880 4.97353 5.02433 5.06055 5.10747 5.20917 5.21451 5.33886 5.36514 5.54544 5.56222 5.96279 6.32902 6.36463 6.64143 6.74813 6.99910 7.31446 8.87982 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.018239 B = 0.002344 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.818048 B =11944.097452 C =12747.202856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 C -0.036 4.036 4 C -0.158 4.158 5 C 0.127 3.873 6 O -0.323 6.323 7 C 0.034 3.966 8 C 0.117 3.883 9 H 0.074 0.926 10 O -0.559 6.559 11 C 0.028 3.972 12 N -0.543 5.543 13 C 0.043 3.957 14 C 0.171 3.829 15 C -0.514 4.514 16 H 0.037 0.963 17 C 0.005 3.995 18 N -0.948 5.948 19 Si 0.944 3.056 20 H -0.269 1.269 21 H -0.280 1.280 22 H -0.248 1.248 23 C -0.205 4.205 24 C -0.066 4.066 25 C -0.086 4.086 26 Cl -0.066 7.066 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.138 0.862 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.383 0.617 36 H 0.108 0.892 37 H 0.049 0.951 38 H 0.021 0.979 39 H 0.043 0.957 40 H 0.086 0.914 41 H -0.010 1.010 42 H 0.024 0.976 43 H 0.266 0.734 44 H 0.157 0.843 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.263 -12.551 -28.701 31.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.126 4.126 3 C -0.037 4.037 4 C -0.176 4.176 5 C 0.081 3.919 6 O -0.236 6.236 7 C -0.041 4.041 8 C 0.056 3.944 9 H 0.092 0.908 10 O -0.365 6.365 11 C -0.100 4.100 12 N -0.267 5.267 13 C -0.105 4.105 14 C 0.044 3.956 15 C -0.552 4.552 16 H 0.055 0.945 17 C -0.192 4.192 18 N -0.589 5.589 19 Si 0.767 3.233 20 H -0.194 1.194 21 H -0.205 1.205 22 H -0.171 1.171 23 C -0.224 4.224 24 C -0.085 4.085 25 C -0.113 4.113 26 Cl -0.038 7.038 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.155 0.845 33 H 0.115 0.885 34 H 0.106 0.894 35 H 0.231 0.769 36 H 0.126 0.874 37 H 0.067 0.933 38 H 0.039 0.961 39 H 0.062 0.938 40 H 0.104 0.896 41 H 0.007 0.993 42 H 0.042 0.958 43 H 0.075 0.925 44 H 0.175 0.825 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -4.445 -13.159 -27.779 31.058 hybrid contribution -0.825 1.012 -0.237 1.327 sum -5.270 -12.147 -28.016 30.987 Atomic orbital electron populations 1.21723 0.93708 1.02867 1.01975 1.20669 0.97055 0.90625 1.04201 1.19712 0.96202 0.97299 0.90437 1.20423 1.04744 0.93518 0.98953 1.19329 0.93964 0.92994 0.85581 1.86163 1.77766 1.29534 1.30146 1.23670 1.01050 0.80682 0.98716 1.21814 0.89193 0.89919 0.93435 0.90791 1.86696 1.24183 1.70311 1.55288 1.22724 1.01690 0.94398 0.91186 1.61654 1.25372 1.29830 1.09882 1.22198 0.97822 0.88972 1.01536 1.19973 0.89082 0.94653 0.91903 1.21278 0.93915 1.47985 0.92069 0.94481 1.25860 1.04137 0.94549 0.94615 1.70054 1.35981 1.51601 1.01309 0.85765 0.79355 0.78870 0.79287 1.19390 1.20530 1.17143 1.21434 1.07337 1.02203 0.91377 1.21078 0.95481 0.92750 0.99174 1.20778 1.07761 0.95087 0.87658 1.98343 1.88906 1.82969 1.33537 0.93040 0.92634 0.90650 0.89655 0.89702 0.84452 0.88512 0.89354 0.76854 0.87397 0.93285 0.96069 0.93760 0.89583 0.99268 0.95842 0.92476 0.82537 0.82667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.84 71.98 0.71 -1.22 16 2 C -0.09 -1.26 5.52 29.85 0.16 -1.09 16 3 C -0.04 -0.65 5.14 -19.86 -0.10 -0.75 16 4 C -0.16 -3.30 9.61 22.36 0.21 -3.09 16 5 C 0.13 2.76 6.69 22.50 0.15 2.91 16 6 O -0.32 -8.17 10.10 -87.99 -0.89 -9.06 16 7 C 0.03 0.68 4.37 71.98 0.31 0.99 16 8 C 0.12 3.28 3.27 30.59 0.10 3.38 16 9 H 0.07 2.62 6.55 -2.38 -0.02 2.60 16 10 O -0.56 -17.50 13.20 -144.34 -1.90 -19.40 16 11 C 0.03 0.77 4.63 86.30 0.40 1.17 16 12 N -0.54 -21.34 4.60 -927.07 -4.27 -25.61 16 13 C 0.04 1.51 9.33 127.69 1.19 2.70 16 14 C 0.17 8.16 3.64 85.56 0.31 8.47 16 15 C -0.51 -30.23 9.09 25.60 0.23 -30.00 16 16 H 0.04 2.44 7.34 -2.91 -0.02 2.41 16 17 C 0.01 0.32 5.47 84.65 0.46 0.78 16 18 N -0.95 -60.34 13.96 21.45 0.30 -60.04 16 19 Si 0.94 44.64 27.47 68.60 1.88 46.52 16 20 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 21 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 22 H -0.25 -10.76 6.54 99.48 0.65 -10.11 16 23 C -0.20 -3.44 9.04 22.36 0.20 -3.24 16 24 C -0.07 -1.04 9.82 22.28 0.22 -0.82 16 25 C -0.09 -1.49 6.31 22.33 0.14 -1.35 16 26 Cl -0.07 -1.02 26.61 -2.72 -0.07 -1.09 16 27 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.05 0.78 7.25 -2.39 -0.02 0.76 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.08 1.12 7.35 -2.39 -0.02 1.11 16 31 H 0.08 1.08 8.00 -2.38 -0.02 1.06 16 32 H 0.14 2.82 8.04 -2.91 -0.02 2.79 16 33 H 0.10 1.33 7.66 -2.39 -0.02 1.31 16 34 H 0.09 1.44 7.66 -2.39 -0.02 1.42 16 35 H 0.38 8.22 9.05 -74.06 -0.67 7.55 16 36 H 0.11 2.12 7.88 -2.38 -0.02 2.10 16 37 H 0.05 1.23 8.05 -2.38 -0.02 1.22 16 38 H 0.02 0.70 8.13 -2.39 -0.02 0.68 16 39 H 0.04 1.87 6.90 -2.39 -0.02 1.85 16 40 H 0.09 2.34 7.97 -2.39 -0.02 2.32 16 41 H -0.01 -0.48 7.17 -2.39 -0.02 -0.50 16 42 H 0.02 1.13 5.81 -2.39 -0.01 1.12 16 43 H 0.27 15.77 8.31 -92.70 -0.77 15.00 16 44 H 0.16 1.88 6.30 -2.91 -0.02 1.86 16 45 H 0.16 1.70 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -74.00 378.21 0.03 -73.97 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.27 Total: 15.86 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: 4.71 Total: -21.15 kcal Atomic # 7 Polarization: -81.68 SS G_CDS: -3.97 Total: -85.64 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -2.79 Total: -28.46 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.52 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.07 Total: -1.09 kcal Total: -74.00 0.03 -73.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414167583.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.847 kcal (2) G-P(sol) polarization free energy of solvation -74.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds