Wall clock time and date at job start Tue Mar 31 2020 14:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38679 * 120.41986 * 2 1 4 4 C 1.38633 * 118.41953 * 180.02562 * 3 2 1 5 5 C 1.38219 * 119.16010 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.61526 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.47388 * 125.00051 * 6 5 4 8 8 N 1.46501 * 109.47457 * 179.97438 * 7 6 5 9 9 S 1.65598 * 119.99884 * 164.99900 * 8 7 6 10 10 O 1.42098 * 106.40577 * 311.46325 * 9 8 7 11 11 O 1.42101 * 106.40330 * 178.54061 * 9 8 7 12 12 N 1.65606 * 107.21806 * 65.00259 * 9 8 7 13 13 C 1.46502 * 120.00061 * 270.00131 * 12 9 8 14 14 C 1.46501 * 119.99949 * 89.99829 * 12 9 8 15 15 H 1.08999 * 109.47164 * 0.02562 * 14 12 9 16 16 C 1.53004 * 109.47066 * 239.99956 * 14 12 9 17 17 C 1.50697 * 109.47071 * 120.00037 * 14 12 9 18 18 H 1.07999 * 120.00028 * 5.62061 * 17 14 12 19 19 C 1.37877 * 119.99883 * 185.61387 * 17 14 12 20 20 N 1.31512 * 119.99916 * 196.97349 * 19 17 14 21 21 Si 1.86798 * 120.00059 * 17.25803 * 19 17 14 22 22 H 1.48500 * 109.47180 * 179.71899 * 21 19 17 23 23 H 1.48497 * 109.47063 * 299.72121 * 21 19 17 24 24 H 1.48504 * 109.46829 * 59.72088 * 21 19 17 25 25 N 1.31858 * 120.76907 * 0.25572 * 5 4 3 26 26 C 1.31888 * 121.71995 * 359.47220 * 25 5 4 27 27 H 1.08999 * 109.46973 * 89.99706 * 1 2 3 28 28 H 1.08993 * 109.47258 * 210.00326 * 1 2 3 29 29 H 1.08997 * 109.47109 * 329.99554 * 1 2 3 30 30 H 1.07998 * 120.78841 * 0.02562 * 3 2 1 31 31 H 1.07998 * 120.41477 * 180.02562 * 4 3 2 32 32 H 1.08993 * 109.47505 * 5.00300 * 6 5 4 33 33 H 1.09006 * 109.47644 * 244.99849 * 6 5 4 34 34 H 1.09009 * 109.46843 * 59.99913 * 7 6 5 35 35 H 1.09001 * 109.47259 * 300.00459 * 7 6 5 36 36 H 0.96997 * 120.00100 * 344.99902 * 8 7 6 37 37 H 1.09001 * 109.46622 * 269.99853 * 13 12 9 38 38 H 1.08999 * 109.47047 * 29.99454 * 13 12 9 39 39 H 1.08998 * 109.47596 * 149.99845 * 13 12 9 40 40 H 1.08995 * 109.46948 * 185.88973 * 16 14 12 41 41 H 1.09001 * 109.47142 * 305.89271 * 16 14 12 42 42 H 1.09007 * 109.46976 * 65.88597 * 16 14 12 43 43 H 0.97003 * 120.00480 * 355.09525 * 20 19 17 44 44 H 1.08000 * 119.61542 * 180.26664 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5946 1.1475 -0.0005 5 6 4.2256 -0.0823 -0.0016 6 6 5.7312 -0.1469 -0.0028 7 6 6.2062 -0.9959 1.1781 8 7 7.6699 -1.0592 1.1766 9 16 8.4772 -1.5854 2.5232 10 8 7.9275 -0.8747 3.6241 11 8 9.8599 -1.5635 2.1963 12 7 8.0746 -3.1763 2.7458 13 6 6.9155 -3.5303 3.5689 14 6 8.8773 -4.2296 2.1195 15 1 9.6904 -3.7775 1.5514 16 6 7.9943 -5.0532 1.1798 17 6 9.4492 -5.1270 3.1866 18 1 9.1638 -4.9881 4.2189 19 6 10.3366 -6.1253 2.8450 20 7 10.5789 -7.1061 3.6869 21 14 11.2009 -6.0806 1.1896 22 1 12.1017 -7.2551 1.0695 23 1 10.1902 -6.1187 0.1023 24 1 11.9980 -4.8323 1.0810 25 7 3.5254 -1.1996 -0.0072 26 6 2.2066 -1.1916 -0.0015 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 1.6890 2.1423 0.0004 31 1 4.1735 2.0592 -0.0001 32 1 6.1381 0.8603 0.0870 33 1 6.0749 -0.5959 -0.9347 34 1 5.7992 -2.0032 1.0883 35 1 5.8625 -0.5469 2.1100 36 1 8.1660 -0.7928 0.3868 37 1 7.2301 -3.6541 4.6052 38 1 6.1705 -2.7370 3.5077 39 1 6.4837 -4.4631 3.2064 40 1 8.5637 -5.8990 0.7946 41 1 7.1248 -5.4191 1.7260 42 1 7.6652 -4.4282 0.3496 43 1 10.1889 -7.0905 4.5750 44 1 1.6672 -2.1272 -0.0020 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416507462.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:50 Heat of formation + Delta-G solvation = -48.296465 kcal Electronic energy + Delta-G solvation = -26097.055358 eV Core-core repulsion = 22369.030292 eV Total energy + Delta-G solvation = -3728.025066 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.61615 -36.80822 -36.39268 -36.09927 -35.29888 -33.94653 -32.52625 -32.48010 -30.14866 -29.77971 -26.57239 -25.74209 -24.56844 -24.24396 -22.98127 -21.50052 -20.62605 -18.87022 -17.53302 -17.38355 -17.06744 -16.79725 -16.22093 -15.90525 -15.40926 -15.20022 -14.73302 -14.41119 -14.02653 -13.67665 -13.52120 -13.27540 -13.18755 -13.10760 -12.96522 -12.88138 -12.26510 -12.08026 -12.07030 -11.91523 -11.77815 -11.69691 -11.52589 -11.49932 -11.33450 -11.20939 -10.76477 -10.40035 -10.08417 -9.94750 -9.73640 -9.69375 -9.32448 -9.11516 -9.04230 -8.36725 -8.02393 -6.44347 -4.07223 0.76501 0.98289 1.13569 3.36367 3.38560 3.47681 3.50647 3.63394 3.97162 4.08235 4.37066 4.46851 4.49204 4.57167 4.66415 4.82589 4.93658 4.95790 5.12012 5.16168 5.19888 5.24424 5.40825 5.44276 5.47257 5.58900 5.67939 5.72883 5.90595 5.96517 6.03277 6.06891 6.25908 6.41003 6.42462 6.43116 6.56943 6.62896 6.97903 7.11532 7.36727 7.54948 7.73046 8.00882 8.39697 8.92423 9.61108 10.94149 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.018821 B = 0.003108 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.328369 B = 9006.793986 C = 9524.480184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.146 4.146 3 C -0.076 4.076 4 C -0.164 4.164 5 C 0.127 3.873 6 C -0.075 4.075 7 C 0.129 3.871 8 N -1.135 6.135 9 S 2.780 3.220 10 O -0.993 6.993 11 O -0.975 6.975 12 N -0.983 5.983 13 C 0.111 3.889 14 C 0.245 3.755 15 H 0.048 0.952 16 C -0.162 4.162 17 C -0.603 4.603 18 H 0.064 0.936 19 C 0.034 3.966 20 N -0.903 5.903 21 Si 1.035 2.965 22 H -0.283 1.283 23 H -0.272 1.272 24 H -0.276 1.276 25 N -0.473 5.473 26 C 0.104 3.896 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.412 0.588 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.051 0.949 42 H 0.026 0.974 43 H 0.268 0.732 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.298 15.942 -10.585 27.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.148 4.148 3 C -0.102 4.102 4 C -0.184 4.184 5 C -0.011 4.011 6 C -0.114 4.114 7 C 0.002 3.998 8 N -0.894 5.894 9 S 2.788 3.212 10 O -0.976 6.976 11 O -0.959 6.959 12 N -0.825 5.825 13 C -0.035 4.035 14 C 0.141 3.859 15 H 0.065 0.935 16 C -0.221 4.221 17 C -0.643 4.643 18 H 0.082 0.918 19 C -0.172 4.172 20 N -0.537 5.537 21 Si 0.863 3.137 22 H -0.209 1.209 23 H -0.199 1.199 24 H -0.202 1.202 25 N -0.182 5.182 26 C -0.053 4.053 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.151 0.849 31 H 0.153 0.847 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.245 0.755 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.045 0.955 43 H 0.078 0.922 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -17.326 14.763 -10.822 25.204 hybrid contribution -1.648 1.551 0.485 2.315 sum -18.975 16.314 -10.337 27.075 Atomic orbital electron populations 1.20712 0.90209 1.03202 1.02546 1.20957 0.97647 0.94328 1.01861 1.21482 0.93981 0.98200 0.96505 1.21999 0.95194 0.98985 1.02173 1.21101 0.96147 0.88581 0.95263 1.20721 0.88884 1.01797 1.00042 1.21103 0.79283 1.00876 0.98523 1.56232 1.15161 1.83608 1.34429 1.01957 0.72996 0.73085 0.73140 1.93542 1.80464 1.72197 1.51404 1.93609 1.30935 1.86907 1.84445 1.57452 1.39974 1.23250 1.61824 1.21164 0.86493 1.00730 0.95137 1.18981 0.88444 0.85464 0.93054 0.93490 1.22540 1.01078 1.00449 0.98014 1.22173 1.29539 1.17906 0.94653 0.91820 1.25693 0.95002 0.91371 1.05143 1.70859 1.46433 1.28345 1.08047 0.84211 0.77222 0.76901 0.75394 1.20895 1.19862 1.20172 1.67502 1.08194 1.30905 1.11577 1.22701 0.89663 0.97583 0.95382 0.90954 0.91055 0.91386 0.84895 0.84660 0.89515 0.89079 0.90516 0.90885 0.75549 0.93175 0.93210 0.90916 0.91740 0.92990 0.95491 0.92191 0.82695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.53 10.04 36.00 0.36 -0.17 16 2 C -0.15 -1.12 5.90 -104.48 -0.62 -1.74 16 3 C -0.08 -0.56 9.86 -39.27 -0.39 -0.95 16 4 C -0.16 -1.37 9.71 -39.44 -0.38 -1.75 16 5 C 0.13 1.31 6.17 -82.59 -0.51 0.80 16 6 C -0.08 -0.73 5.75 -27.88 -0.16 -0.89 16 7 C 0.13 1.61 6.11 -4.04 -0.02 1.59 16 8 N -1.14 -15.94 6.05 -10.61 -0.06 -16.00 16 9 S 2.78 53.89 6.09 -107.50 -0.66 53.23 16 10 O -0.99 -20.74 16.68 -57.17 -0.95 -21.69 16 11 O -0.98 -22.21 16.70 -57.17 -0.95 -23.17 16 12 N -0.98 -20.39 3.12 -115.85 -0.36 -20.75 16 13 C 0.11 2.04 9.48 59.85 0.57 2.61 16 14 C 0.25 5.81 2.21 -69.08 -0.15 5.65 16 15 H 0.05 1.16 5.57 -51.93 -0.29 0.87 16 16 C -0.16 -3.39 8.96 37.16 0.33 -3.05 16 17 C -0.60 -16.86 8.68 -34.44 -0.30 -17.16 16 18 H 0.06 1.91 7.75 -52.49 -0.41 1.51 16 19 C 0.03 0.97 5.30 -17.82 -0.09 0.88 16 20 N -0.90 -27.56 13.70 55.43 0.76 -26.80 16 21 Si 1.03 25.13 26.29 -169.99 -4.47 20.67 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.27 -5.92 5.74 56.52 0.32 -5.60 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 N -0.47 -5.44 9.89 -9.48 -0.09 -5.53 16 26 C 0.10 0.97 10.86 -17.55 -0.19 0.78 16 27 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 29 H 0.07 0.27 8.10 -51.93 -0.42 -0.15 16 30 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 31 H 0.14 0.83 7.95 -52.49 -0.42 0.42 16 32 H 0.09 0.67 7.87 -51.93 -0.41 0.26 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 1.01 7.95 -51.92 -0.41 0.60 16 35 H 0.07 0.95 7.75 -51.93 -0.40 0.55 16 36 H 0.41 4.78 8.65 -34.47 -0.30 4.49 16 37 H 0.05 0.96 8.09 -51.93 -0.42 0.54 16 38 H 0.05 0.77 7.79 -51.93 -0.40 0.37 16 39 H 0.07 1.28 6.33 -51.93 -0.33 0.96 16 40 H 0.06 1.41 4.85 -51.93 -0.25 1.16 16 41 H 0.05 1.04 6.45 -51.93 -0.33 0.71 16 42 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.27 8.15 8.73 -40.82 -0.36 7.80 16 44 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 369.95 15.07 5.58 5.58 Total: -1.00 -35.61 369.95 -9.33 -44.95 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -6.56 Total: 2.92 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: -1.56 Total: -13.40 kcal Atomic # 7 Polarization: -69.33 SS G_CDS: 0.24 Total: -69.09 kcal Atomic # 8 Polarization: -42.95 SS G_CDS: -1.91 Total: -44.86 kcal Atomic # 14 Polarization: 25.13 SS G_CDS: -4.47 Total: 20.67 kcal Atomic # 16 Polarization: 53.89 SS G_CDS: -0.66 Total: 53.23 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.61 -9.33 -44.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416507462.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.349 kcal (2) G-P(sol) polarization free energy of solvation -35.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds