Wall clock time and date at job start Tue Mar 31 2020 14:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38679 * 120.41986 * 2 1 4 4 C 1.38633 * 118.41953 * 180.02562 * 3 2 1 5 5 C 1.38219 * 119.16010 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.61526 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.47388 * 125.00051 * 6 5 4 8 8 N 1.46501 * 109.47457 * 179.97438 * 7 6 5 9 9 S 1.65598 * 119.99884 * 164.99900 * 8 7 6 10 10 O 1.42098 * 106.40577 * 311.46325 * 9 8 7 11 11 O 1.42101 * 106.40330 * 178.54061 * 9 8 7 12 12 N 1.65606 * 107.21806 * 65.00259 * 9 8 7 13 13 C 1.46502 * 120.00061 * 270.00131 * 12 9 8 14 14 C 1.46501 * 119.99949 * 89.99829 * 12 9 8 15 15 H 1.08999 * 109.47164 * 0.02562 * 14 12 9 16 16 C 1.53004 * 109.47066 * 239.99956 * 14 12 9 17 17 C 1.50697 * 109.47071 * 120.00037 * 14 12 9 18 18 H 1.07999 * 120.00028 * 5.62061 * 17 14 12 19 19 C 1.37877 * 119.99883 * 185.61387 * 17 14 12 20 20 N 1.31512 * 119.99916 * 196.97349 * 19 17 14 21 21 Si 1.86798 * 120.00059 * 17.25803 * 19 17 14 22 22 H 1.48500 * 109.47180 * 179.71899 * 21 19 17 23 23 H 1.48497 * 109.47063 * 299.72121 * 21 19 17 24 24 H 1.48504 * 109.46829 * 59.72088 * 21 19 17 25 25 N 1.31858 * 120.76907 * 0.25572 * 5 4 3 26 26 C 1.31888 * 121.71995 * 359.47220 * 25 5 4 27 27 H 1.08999 * 109.46973 * 89.99706 * 1 2 3 28 28 H 1.08993 * 109.47258 * 210.00326 * 1 2 3 29 29 H 1.08997 * 109.47109 * 329.99554 * 1 2 3 30 30 H 1.07998 * 120.78841 * 0.02562 * 3 2 1 31 31 H 1.07998 * 120.41477 * 180.02562 * 4 3 2 32 32 H 1.08993 * 109.47505 * 5.00300 * 6 5 4 33 33 H 1.09006 * 109.47644 * 244.99849 * 6 5 4 34 34 H 1.09009 * 109.46843 * 59.99913 * 7 6 5 35 35 H 1.09001 * 109.47259 * 300.00459 * 7 6 5 36 36 H 0.96997 * 120.00100 * 344.99902 * 8 7 6 37 37 H 1.09001 * 109.46622 * 269.99853 * 13 12 9 38 38 H 1.08999 * 109.47047 * 29.99454 * 13 12 9 39 39 H 1.08998 * 109.47596 * 149.99845 * 13 12 9 40 40 H 1.08995 * 109.46948 * 185.88973 * 16 14 12 41 41 H 1.09001 * 109.47142 * 305.89271 * 16 14 12 42 42 H 1.09007 * 109.46976 * 65.88597 * 16 14 12 43 43 H 0.97003 * 120.00480 * 355.09525 * 20 19 17 44 44 H 1.08000 * 119.61542 * 180.26664 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5946 1.1475 -0.0005 5 6 4.2256 -0.0823 -0.0016 6 6 5.7312 -0.1469 -0.0028 7 6 6.2062 -0.9959 1.1781 8 7 7.6699 -1.0592 1.1766 9 16 8.4772 -1.5854 2.5232 10 8 7.9275 -0.8747 3.6241 11 8 9.8599 -1.5635 2.1963 12 7 8.0746 -3.1763 2.7458 13 6 6.9155 -3.5303 3.5689 14 6 8.8773 -4.2296 2.1195 15 1 9.6904 -3.7775 1.5514 16 6 7.9943 -5.0532 1.1798 17 6 9.4492 -5.1270 3.1866 18 1 9.1638 -4.9881 4.2189 19 6 10.3366 -6.1253 2.8450 20 7 10.5789 -7.1061 3.6869 21 14 11.2009 -6.0806 1.1896 22 1 12.1017 -7.2551 1.0695 23 1 10.1902 -6.1187 0.1023 24 1 11.9980 -4.8323 1.0810 25 7 3.5254 -1.1996 -0.0072 26 6 2.2066 -1.1916 -0.0015 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 1.6890 2.1423 0.0004 31 1 4.1735 2.0592 -0.0001 32 1 6.1381 0.8603 0.0870 33 1 6.0749 -0.5959 -0.9347 34 1 5.7992 -2.0032 1.0883 35 1 5.8625 -0.5469 2.1100 36 1 8.1660 -0.7928 0.3868 37 1 7.2301 -3.6541 4.6052 38 1 6.1705 -2.7370 3.5077 39 1 6.4837 -4.4631 3.2064 40 1 8.5637 -5.8990 0.7946 41 1 7.1248 -5.4191 1.7260 42 1 7.6652 -4.4282 0.3496 43 1 10.1889 -7.0905 4.5750 44 1 1.6672 -2.1272 -0.0020 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416507462.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:49 Heat of formation + Delta-G solvation = -75.527021 kcal Electronic energy + Delta-G solvation = -26098.236164 eV Core-core repulsion = 22369.030292 eV Total energy + Delta-G solvation = -3729.205872 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.23032 -38.43975 -38.08734 -37.14814 -36.96129 -34.66458 -34.60496 -33.14152 -31.59374 -30.87022 -27.37754 -27.19535 -26.59035 -24.94299 -23.70187 -22.52144 -22.10791 -20.36405 -19.58221 -18.91237 -18.40552 -17.78181 -17.24083 -16.90050 -16.49795 -15.95804 -15.84507 -15.72149 -15.33442 -15.07550 -15.02434 -14.67490 -14.19823 -14.03092 -13.90199 -13.76792 -13.64997 -13.44963 -13.34752 -13.29944 -13.24433 -13.09218 -12.93191 -12.71507 -12.59852 -12.43059 -12.29121 -12.16884 -11.79522 -11.55375 -11.14891 -10.68522 -10.58810 -10.43352 -10.26867 -9.87108 -9.64453 -8.70285 -6.35290 -0.42328 0.17083 0.39303 1.45477 1.57719 1.72073 1.95038 2.48348 2.55384 2.82482 3.08158 3.33224 3.39005 3.78766 3.90133 3.95919 3.99375 4.07728 4.13512 4.23790 4.44139 4.46201 4.57854 4.62483 4.64140 4.75230 4.78789 4.82679 4.84815 4.88874 4.91238 4.99880 5.02573 5.13588 5.23409 5.26633 5.31399 5.40297 5.59929 5.74001 5.84448 5.98600 6.05961 6.14661 6.61982 7.08811 7.41723 8.65270 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.018821 B = 0.003108 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.328369 B = 9006.793986 C = 9524.480184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.145 4.145 3 C -0.082 4.082 4 C -0.166 4.166 5 C 0.104 3.896 6 C -0.068 4.068 7 C 0.126 3.874 8 N -1.113 6.113 9 S 2.796 3.204 10 O -1.011 7.011 11 O -1.011 7.011 12 N -0.993 5.993 13 C 0.108 3.892 14 C 0.245 3.755 15 H 0.044 0.956 16 C -0.155 4.155 17 C -0.606 4.606 18 H 0.026 0.974 19 C -0.017 4.017 20 N -0.935 5.935 21 Si 1.066 2.934 22 H -0.285 1.285 23 H -0.226 1.226 24 H -0.272 1.272 25 N -0.505 5.505 26 C 0.083 3.917 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.160 0.840 31 H 0.157 0.843 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.426 0.574 37 H 0.029 0.971 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.062 0.938 43 H 0.252 0.748 44 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.261 17.926 -13.225 30.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.147 4.147 3 C -0.107 4.107 4 C -0.186 4.186 5 C -0.034 4.034 6 C -0.107 4.107 7 C 0.000 4.000 8 N -0.878 5.878 9 S 2.805 3.195 10 O -0.994 6.994 11 O -0.995 6.995 12 N -0.834 5.834 13 C -0.037 4.037 14 C 0.139 3.861 15 H 0.061 0.939 16 C -0.214 4.214 17 C -0.645 4.645 18 H 0.044 0.956 19 C -0.215 4.215 20 N -0.571 5.571 21 Si 0.887 3.113 22 H -0.211 1.211 23 H -0.149 1.149 24 H -0.198 1.198 25 N -0.214 5.214 26 C -0.075 4.075 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.177 0.823 31 H 0.175 0.825 32 H 0.126 0.874 33 H 0.116 0.884 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.263 0.737 37 H 0.048 0.952 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.061 0.939 44 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -19.320 16.758 -13.457 28.900 hybrid contribution -1.168 1.046 1.392 2.097 sum -20.488 17.804 -12.065 29.704 Atomic orbital electron populations 1.20767 0.88271 1.04050 1.03393 1.21277 0.99095 0.93921 1.00381 1.21874 0.93911 0.99271 0.95666 1.22279 0.95927 0.99101 1.01243 1.21238 0.96286 0.89177 0.96744 1.20693 0.88905 1.02354 0.98788 1.21240 0.77587 1.01375 0.99805 1.55679 1.15988 1.82566 1.33526 1.01245 0.72174 0.72555 0.73573 1.93518 1.80565 1.72287 1.53003 1.93554 1.33640 1.87240 1.85093 1.57409 1.40249 1.23243 1.62489 1.21270 0.86412 1.02280 0.93784 1.18810 0.89400 0.85732 0.92145 0.93871 1.22394 1.00402 1.00162 0.98449 1.22409 1.29250 1.18586 0.94255 0.95604 1.27061 0.95472 0.90980 1.08026 1.70987 1.48033 1.30169 1.07923 0.83865 0.77452 0.76832 0.73164 1.21129 1.14935 1.19788 1.67439 1.09318 1.31960 1.12688 1.23010 0.89419 0.98913 0.96120 0.89976 0.90551 0.90238 0.82271 0.82536 0.87418 0.88395 0.91024 0.91495 0.73719 0.95171 0.90199 0.90298 0.92507 0.92616 0.91900 0.93893 0.81672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.04 71.23 0.72 -0.05 16 2 C -0.14 -1.90 5.90 -19.77 -0.12 -2.02 16 3 C -0.08 -0.99 9.86 22.47 0.22 -0.76 16 4 C -0.17 -2.34 9.71 22.36 0.22 -2.12 16 5 C 0.10 1.92 6.17 42.55 0.26 2.19 16 6 C -0.07 -1.14 5.75 29.85 0.17 -0.97 16 7 C 0.13 2.87 6.11 86.38 0.53 3.40 16 8 N -1.11 -28.72 6.05 -187.47 -1.14 -29.86 16 9 S 2.80 105.69 6.09 -56.49 -0.34 105.34 16 10 O -1.01 -41.51 16.68 -128.00 -2.14 -43.65 16 11 O -1.01 -45.49 16.70 -128.00 -2.14 -47.63 16 12 N -0.99 -40.57 3.12 -520.44 -1.62 -42.20 16 13 C 0.11 3.95 9.48 127.77 1.21 5.16 16 14 C 0.24 11.37 2.21 44.25 0.10 11.47 16 15 H 0.04 2.07 5.57 -2.39 -0.01 2.06 16 16 C -0.16 -6.11 8.96 71.98 0.64 -5.47 16 17 C -0.61 -34.54 8.68 25.60 0.22 -34.32 16 18 H 0.03 1.62 7.75 -2.91 -0.02 1.60 16 19 C -0.02 -0.96 5.30 84.65 0.45 -0.51 16 20 N -0.94 -58.88 13.70 21.45 0.29 -58.58 16 21 Si 1.07 49.78 26.29 68.60 1.80 51.58 16 22 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 23 H -0.23 -8.85 5.74 99.48 0.57 -8.28 16 24 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 25 N -0.50 -10.91 9.89 -183.89 -1.82 -12.73 16 26 C 0.08 1.43 10.86 84.67 0.92 2.34 16 27 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.08 0.47 8.09 -2.39 -0.02 0.45 16 29 H 0.08 0.40 8.10 -2.39 -0.02 0.38 16 30 H 0.16 0.99 8.06 -2.91 -0.02 0.97 16 31 H 0.16 1.40 7.95 -2.91 -0.02 1.38 16 32 H 0.11 1.31 7.87 -2.39 -0.02 1.29 16 33 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 34 H 0.07 1.74 7.95 -2.38 -0.02 1.72 16 35 H 0.07 1.62 7.75 -2.39 -0.02 1.60 16 36 H 0.43 8.72 8.65 -96.75 -0.84 7.88 16 37 H 0.03 1.19 8.09 -2.39 -0.02 1.17 16 38 H 0.08 2.39 7.79 -2.39 -0.02 2.37 16 39 H 0.08 2.75 6.33 -2.39 -0.02 2.73 16 40 H 0.06 2.32 4.85 -2.39 -0.01 2.31 16 41 H 0.05 2.13 6.45 -2.39 -0.02 2.11 16 42 H 0.06 2.02 8.14 -2.38 -0.02 2.01 16 43 H 0.25 16.12 8.73 -92.71 -0.81 15.32 16 44 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -79.12 369.95 -1.56 -80.68 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 0.00 Total: 18.70 kcal Atomic # 6 Polarization: -27.21 SS G_CDS: 5.54 Total: -21.66 kcal Atomic # 7 Polarization: -139.08 SS G_CDS: -4.28 Total: -143.36 kcal Atomic # 8 Polarization: -87.01 SS G_CDS: -4.27 Total: -91.28 kcal Atomic # 14 Polarization: 49.78 SS G_CDS: 1.80 Total: 51.58 kcal Atomic # 16 Polarization: 105.69 SS G_CDS: -0.34 Total: 105.34 kcal Total: -79.12 -1.56 -80.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416507462.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.152 kcal (2) G-P(sol) polarization free energy of solvation -79.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds