Wall clock time and date at job start Tue Mar 31 2020 14:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38675 * 120.41500 * 2 1 4 4 C 1.38624 * 118.42145 * 180.02562 * 3 2 1 5 5 C 1.38232 * 119.15705 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.61338 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.46726 * 125.00016 * 6 5 4 8 8 N 1.46506 * 109.46688 * 179.97438 * 7 6 5 9 9 S 1.65603 * 119.99623 * 165.00136 * 8 7 6 10 10 O 1.42101 * 106.40211 * 178.54140 * 9 8 7 11 11 O 1.42098 * 106.40116 * 311.45829 * 9 8 7 12 12 N 1.65597 * 107.21988 * 65.00017 * 9 8 7 13 13 C 1.46496 * 120.00256 * 89.99830 * 12 9 8 14 14 C 1.46508 * 119.99545 * 269.99656 * 12 9 8 15 15 H 1.08998 * 109.47415 * 0.02562 * 14 12 9 16 16 C 1.53000 * 109.46583 * 120.00393 * 14 12 9 17 17 C 1.50702 * 109.46930 * 239.99604 * 14 12 9 18 18 H 1.08001 * 119.99838 * 0.02562 * 17 14 12 19 19 C 1.37876 * 119.99656 * 179.97438 * 17 14 12 20 20 N 1.31517 * 119.99637 * 180.02562 * 19 17 14 21 21 Si 1.86805 * 120.00283 * 0.02562 * 19 17 14 22 22 H 1.48499 * 109.46831 * 89.99607 * 21 19 17 23 23 H 1.48496 * 109.46890 * 209.99306 * 21 19 17 24 24 H 1.48495 * 109.46944 * 330.00058 * 21 19 17 25 25 N 1.31847 * 120.76397 * 0.24889 * 5 4 3 26 26 C 1.31883 * 121.72942 * 359.47976 * 25 5 4 27 27 H 1.09000 * 109.47539 * 89.99704 * 1 2 3 28 28 H 1.09002 * 109.46624 * 209.99901 * 1 2 3 29 29 H 1.09000 * 109.47452 * 329.99122 * 1 2 3 30 30 H 1.08003 * 120.78727 * 0.02562 * 3 2 1 31 31 H 1.07995 * 120.42275 * 180.02562 * 4 3 2 32 32 H 1.08999 * 109.47057 * 244.99866 * 6 5 4 33 33 H 1.09000 * 109.47142 * 5.00107 * 6 5 4 34 34 H 1.08999 * 109.47230 * 299.99743 * 7 6 5 35 35 H 1.09000 * 109.47236 * 60.00148 * 7 6 5 36 36 H 0.96998 * 120.00294 * 344.99869 * 8 7 6 37 37 H 1.09002 * 109.46864 * 90.00013 * 13 12 9 38 38 H 1.09000 * 109.46976 * 209.99817 * 13 12 9 39 39 H 1.09002 * 109.47260 * 330.00213 * 13 12 9 40 40 H 1.08997 * 109.47868 * 59.99624 * 16 14 12 41 41 H 1.09010 * 109.47165 * 179.97438 * 16 14 12 42 42 H 1.08998 * 109.47393 * 299.99690 * 16 14 12 43 43 H 0.97006 * 119.99582 * 180.02562 * 20 19 17 44 44 H 1.08000 * 119.62282 * 180.26247 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5945 1.1477 -0.0005 5 6 4.2255 -0.0822 -0.0016 6 6 5.7312 -0.1466 -0.0028 7 6 6.2062 -0.9956 1.1781 8 7 7.6699 -1.0587 1.1766 9 16 8.4773 -1.5850 2.5233 10 8 9.8600 -1.5629 2.1964 11 8 7.9275 -0.8741 3.6241 12 7 8.0748 -3.1758 2.7458 13 6 8.8776 -4.2290 2.1196 14 6 6.9157 -3.5298 3.5691 15 1 6.4471 -2.6210 3.9468 16 6 5.9075 -4.3088 2.7221 17 6 7.3642 -4.3831 4.7274 18 1 8.4082 -4.6361 4.8394 19 6 6.4419 -4.8400 5.6448 20 7 6.8333 -5.5843 6.6559 21 14 4.6362 -4.4018 5.4515 22 1 3.9610 -5.4373 4.6287 23 1 3.9963 -4.3383 6.7900 24 1 4.5162 -3.0818 4.7821 25 7 3.5254 -1.1994 -0.0070 26 6 2.2067 -1.1916 -0.0014 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3632 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5140 30 1 1.6888 2.1424 0.0004 31 1 4.1734 2.0594 -0.0001 32 1 6.0749 -0.5956 -0.9346 33 1 6.1381 0.8606 0.0870 34 1 5.8625 -0.5466 2.1099 35 1 5.7994 -2.0028 1.0884 36 1 8.1660 -0.7923 0.3868 37 1 9.6787 -4.5262 2.7964 38 1 8.2442 -5.0901 1.9061 39 1 9.3071 -3.8546 1.1904 40 1 6.3758 -5.2175 2.3440 41 1 5.0453 -4.5726 3.3347 42 1 5.5831 -3.6917 1.8842 43 1 6.1843 -5.9061 7.3011 44 1 1.6672 -2.1272 -0.0019 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416507463.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:01 Heat of formation + Delta-G solvation = -39.796809 kcal Electronic energy + Delta-G solvation = -26525.423435 eV Core-core repulsion = 22797.766941 eV Total energy + Delta-G solvation = -3727.656493 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.52961 -36.84585 -36.37253 -36.08091 -35.27842 -33.87608 -32.46184 -32.40404 -30.09898 -29.98175 -26.49684 -25.75845 -24.99660 -24.16084 -22.90730 -21.40838 -20.86724 -18.90893 -17.39813 -17.14271 -16.99016 -16.35193 -16.14553 -15.91554 -15.34125 -15.17542 -15.01326 -14.31750 -14.30457 -13.63024 -13.47019 -13.35014 -13.15937 -13.03567 -12.81278 -12.72998 -12.34961 -12.23765 -12.01096 -11.89138 -11.78984 -11.72781 -11.52512 -11.43813 -11.30744 -11.15054 -11.01691 -10.41796 -10.12061 -9.99640 -9.62783 -9.54990 -9.37588 -9.25931 -8.96078 -8.60447 -8.07742 -6.09582 -4.09610 0.84894 1.07152 1.14462 3.24679 3.36567 3.38171 3.40980 3.55781 4.01329 4.13045 4.37601 4.44153 4.55585 4.65281 4.75023 4.88393 4.97703 5.03168 5.18350 5.20548 5.24147 5.27320 5.47412 5.50389 5.54681 5.67201 5.71709 5.79148 5.96596 6.02467 6.08485 6.09422 6.24008 6.33019 6.44633 6.49807 6.54048 6.61117 6.85952 7.11416 7.33693 7.45570 7.67710 7.82061 8.50577 8.95123 9.50647 11.03477 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.010950 B = 0.004603 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.479480 B = 6081.530801 C = 7956.487655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.146 4.146 3 C -0.076 4.076 4 C -0.164 4.164 5 C 0.127 3.873 6 C -0.073 4.073 7 C 0.123 3.877 8 N -1.135 6.135 9 S 2.782 3.218 10 O -0.991 6.991 11 O -0.974 6.974 12 N -0.984 5.984 13 C 0.110 3.890 14 C 0.239 3.761 15 H 0.056 0.944 16 C -0.165 4.165 17 C -0.521 4.521 18 H 0.082 0.918 19 C 0.074 3.926 20 N -0.895 5.895 21 Si 0.881 3.119 22 H -0.277 1.277 23 H -0.294 1.294 24 H -0.264 1.264 25 N -0.473 5.473 26 C 0.105 3.895 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.410 0.590 37 H 0.053 0.947 38 H 0.072 0.928 39 H 0.051 0.949 40 H 0.059 0.941 41 H 0.048 0.952 42 H 0.037 0.963 43 H 0.265 0.735 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.927 11.919 -18.008 23.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.148 4.148 3 C -0.102 4.102 4 C -0.184 4.184 5 C -0.012 4.012 6 C -0.113 4.113 7 C -0.003 4.003 8 N -0.894 5.894 9 S 2.791 3.209 10 O -0.975 6.975 11 O -0.958 6.958 12 N -0.826 5.826 13 C -0.036 4.036 14 C 0.134 3.866 15 H 0.073 0.927 16 C -0.223 4.223 17 C -0.560 4.560 18 H 0.100 0.900 19 C -0.128 4.128 20 N -0.533 5.533 21 Si 0.711 3.289 22 H -0.204 1.204 23 H -0.222 1.222 24 H -0.189 1.189 25 N -0.181 5.181 26 C -0.053 4.053 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.151 0.849 31 H 0.153 0.847 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.242 0.758 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.056 0.944 43 H 0.075 0.925 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -9.039 11.490 -17.121 22.513 hybrid contribution -1.592 0.752 -0.540 1.842 sum -10.631 12.242 -17.661 23.975 Atomic orbital electron populations 1.20714 0.90224 1.03256 1.02467 1.20953 0.97646 0.94330 1.01835 1.21470 0.93986 0.98170 0.96550 1.21985 0.95193 0.98942 1.02231 1.21094 0.96141 0.88609 0.95336 1.20706 0.88965 1.01735 0.99853 1.21224 0.79047 1.01302 0.98758 1.56200 1.15343 1.83538 1.34309 1.01884 0.72689 0.73322 0.73050 1.93562 1.31640 1.87391 1.84916 1.93593 1.79902 1.71533 1.50731 1.57412 1.40958 1.22209 1.62009 1.21175 0.95039 0.91759 0.95591 1.19087 0.81805 0.96785 0.88895 0.92685 1.22542 0.99475 1.01151 0.99155 1.21167 0.96887 1.31186 1.06755 0.89979 1.24896 0.98627 0.94462 0.94862 1.69880 1.34675 1.34951 1.13754 0.86967 0.85853 0.79570 0.76544 1.20362 1.22169 1.18933 1.67481 1.08230 1.30904 1.11499 1.22698 0.89664 0.97608 0.95281 0.90995 0.91036 0.91378 0.84907 0.84677 0.89241 0.89559 0.90577 0.90085 0.75797 0.92810 0.90923 0.93034 0.92170 0.93323 0.94389 0.92502 0.82700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 10.04 36.01 0.36 -0.31 16 2 C -0.15 -1.32 5.90 -104.48 -0.62 -1.93 16 3 C -0.08 -0.66 9.86 -39.28 -0.39 -1.04 16 4 C -0.16 -1.55 9.71 -39.44 -0.38 -1.93 16 5 C 0.13 1.45 6.17 -82.58 -0.51 0.94 16 6 C -0.07 -0.76 5.76 -27.88 -0.16 -0.92 16 7 C 0.12 1.70 6.11 -4.04 -0.02 1.67 16 8 N -1.14 -15.72 6.05 -10.61 -0.06 -15.78 16 9 S 2.78 53.11 6.09 -107.50 -0.66 52.45 16 10 O -0.99 -20.16 17.21 -57.17 -0.98 -21.15 16 11 O -0.97 -22.19 16.17 -57.17 -0.92 -23.11 16 12 N -0.98 -20.02 3.12 -115.85 -0.36 -20.38 16 13 C 0.11 1.96 9.53 59.84 0.57 2.53 16 14 C 0.24 5.62 2.21 -69.08 -0.15 5.46 16 15 H 0.06 1.37 5.97 -51.93 -0.31 1.06 16 16 C -0.16 -3.42 8.65 37.16 0.32 -3.10 16 17 C -0.52 -14.57 8.95 -34.44 -0.31 -14.87 16 18 H 0.08 2.49 7.89 -52.49 -0.41 2.07 16 19 C 0.07 2.14 5.45 -17.82 -0.10 2.04 16 20 N -0.89 -27.25 13.96 55.43 0.77 -26.47 16 21 Si 0.88 21.79 24.37 -169.99 -4.14 17.65 16 22 H -0.28 -6.52 6.87 56.52 0.39 -6.13 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 H -0.26 -6.32 6.53 56.52 0.37 -5.95 16 25 N -0.47 -6.10 9.89 -9.47 -0.09 -6.20 16 26 C 0.11 1.14 10.86 -17.55 -0.19 0.95 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 29 H 0.07 0.36 8.10 -51.93 -0.42 -0.06 16 30 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 31 H 0.14 0.96 7.95 -52.49 -0.42 0.54 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.09 0.71 7.87 -51.93 -0.41 0.31 16 34 H 0.08 1.17 7.75 -51.93 -0.40 0.77 16 35 H 0.08 1.20 5.99 -51.93 -0.31 0.89 16 36 H 0.41 4.37 8.65 -34.47 -0.30 4.07 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.07 1.22 6.43 -51.93 -0.33 0.89 16 39 H 0.05 0.75 7.79 -51.93 -0.40 0.35 16 40 H 0.06 1.19 6.66 -51.93 -0.35 0.84 16 41 H 0.05 1.07 3.27 -51.92 -0.17 0.90 16 42 H 0.04 0.68 6.18 -51.93 -0.32 0.36 16 43 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 364.02 15.07 5.49 5.49 Total: -1.00 -35.77 364.02 -8.82 -44.59 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -6.27 Total: 3.44 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -1.58 Total: -10.52 kcal Atomic # 7 Polarization: -69.09 SS G_CDS: 0.25 Total: -68.84 kcal Atomic # 8 Polarization: -42.35 SS G_CDS: -1.91 Total: -44.26 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.14 Total: 17.65 kcal Atomic # 16 Polarization: 53.11 SS G_CDS: -0.66 Total: 52.45 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.77 -8.82 -44.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416507463.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.793 kcal (2) G-P(sol) polarization free energy of solvation -35.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds