Wall clock time and date at job start Tue Mar 31 2020 14:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38675 * 120.41500 * 2 1 4 4 C 1.38624 * 118.42145 * 180.02562 * 3 2 1 5 5 C 1.38232 * 119.15705 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.61338 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.46726 * 125.00016 * 6 5 4 8 8 N 1.46506 * 109.46688 * 179.97438 * 7 6 5 9 9 S 1.65603 * 119.99623 * 165.00136 * 8 7 6 10 10 O 1.42101 * 106.40211 * 178.54140 * 9 8 7 11 11 O 1.42098 * 106.40116 * 311.45829 * 9 8 7 12 12 N 1.65597 * 107.21988 * 65.00017 * 9 8 7 13 13 C 1.46496 * 120.00256 * 89.99830 * 12 9 8 14 14 C 1.46508 * 119.99545 * 269.99656 * 12 9 8 15 15 H 1.08998 * 109.47415 * 0.02562 * 14 12 9 16 16 C 1.53000 * 109.46583 * 120.00393 * 14 12 9 17 17 C 1.50702 * 109.46930 * 239.99604 * 14 12 9 18 18 H 1.08001 * 119.99838 * 0.02562 * 17 14 12 19 19 C 1.37876 * 119.99656 * 179.97438 * 17 14 12 20 20 N 1.31517 * 119.99637 * 180.02562 * 19 17 14 21 21 Si 1.86805 * 120.00283 * 0.02562 * 19 17 14 22 22 H 1.48499 * 109.46831 * 89.99607 * 21 19 17 23 23 H 1.48496 * 109.46890 * 209.99306 * 21 19 17 24 24 H 1.48495 * 109.46944 * 330.00058 * 21 19 17 25 25 N 1.31847 * 120.76397 * 0.24889 * 5 4 3 26 26 C 1.31883 * 121.72942 * 359.47976 * 25 5 4 27 27 H 1.09000 * 109.47539 * 89.99704 * 1 2 3 28 28 H 1.09002 * 109.46624 * 209.99901 * 1 2 3 29 29 H 1.09000 * 109.47452 * 329.99122 * 1 2 3 30 30 H 1.08003 * 120.78727 * 0.02562 * 3 2 1 31 31 H 1.07995 * 120.42275 * 180.02562 * 4 3 2 32 32 H 1.08999 * 109.47057 * 244.99866 * 6 5 4 33 33 H 1.09000 * 109.47142 * 5.00107 * 6 5 4 34 34 H 1.08999 * 109.47230 * 299.99743 * 7 6 5 35 35 H 1.09000 * 109.47236 * 60.00148 * 7 6 5 36 36 H 0.96998 * 120.00294 * 344.99869 * 8 7 6 37 37 H 1.09002 * 109.46864 * 90.00013 * 13 12 9 38 38 H 1.09000 * 109.46976 * 209.99817 * 13 12 9 39 39 H 1.09002 * 109.47260 * 330.00213 * 13 12 9 40 40 H 1.08997 * 109.47868 * 59.99624 * 16 14 12 41 41 H 1.09010 * 109.47165 * 179.97438 * 16 14 12 42 42 H 1.08998 * 109.47393 * 299.99690 * 16 14 12 43 43 H 0.97006 * 119.99582 * 180.02562 * 20 19 17 44 44 H 1.08000 * 119.62282 * 180.26247 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5945 1.1477 -0.0005 5 6 4.2255 -0.0822 -0.0016 6 6 5.7312 -0.1466 -0.0028 7 6 6.2062 -0.9956 1.1781 8 7 7.6699 -1.0587 1.1766 9 16 8.4773 -1.5850 2.5233 10 8 9.8600 -1.5629 2.1964 11 8 7.9275 -0.8741 3.6241 12 7 8.0748 -3.1758 2.7458 13 6 8.8776 -4.2290 2.1196 14 6 6.9157 -3.5298 3.5691 15 1 6.4471 -2.6210 3.9468 16 6 5.9075 -4.3088 2.7221 17 6 7.3642 -4.3831 4.7274 18 1 8.4082 -4.6361 4.8394 19 6 6.4419 -4.8400 5.6448 20 7 6.8333 -5.5843 6.6559 21 14 4.6362 -4.4018 5.4515 22 1 3.9610 -5.4373 4.6287 23 1 3.9963 -4.3383 6.7900 24 1 4.5162 -3.0818 4.7821 25 7 3.5254 -1.1994 -0.0070 26 6 2.2067 -1.1916 -0.0014 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3632 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5140 30 1 1.6888 2.1424 0.0004 31 1 4.1734 2.0594 -0.0001 32 1 6.0749 -0.5956 -0.9346 33 1 6.1381 0.8606 0.0870 34 1 5.8625 -0.5466 2.1099 35 1 5.7994 -2.0028 1.0884 36 1 8.1660 -0.7923 0.3868 37 1 9.6787 -4.5262 2.7964 38 1 8.2442 -5.0901 1.9061 39 1 9.3071 -3.8546 1.1904 40 1 6.3758 -5.2175 2.3440 41 1 5.0453 -4.5726 3.3347 42 1 5.5831 -3.6917 1.8842 43 1 6.1843 -5.9061 7.3011 44 1 1.6672 -2.1272 -0.0019 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416507463.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:00 Heat of formation + Delta-G solvation = -67.811856 kcal Electronic energy + Delta-G solvation = -26526.638258 eV Core-core repulsion = 22797.766941 eV Total energy + Delta-G solvation = -3728.871317 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.23138 -38.46742 -38.06928 -37.15065 -36.93077 -34.65479 -34.54196 -33.14333 -31.80391 -30.87246 -27.35933 -27.23850 -26.96871 -24.95124 -23.70760 -22.70742 -22.14654 -20.36818 -18.98348 -18.92512 -18.14726 -17.78482 -17.34100 -16.90633 -16.87702 -16.11044 -15.96631 -15.74735 -15.29711 -15.14479 -14.96855 -14.55282 -14.21272 -14.17090 -13.92186 -13.83645 -13.70511 -13.48179 -13.34701 -13.24919 -13.15401 -13.08212 -12.95234 -12.82263 -12.66178 -12.51990 -12.29418 -12.14234 -12.01935 -11.47363 -11.31638 -10.77359 -10.68451 -10.56410 -10.26576 -9.78602 -9.64470 -8.31198 -6.35710 -0.40754 0.16986 0.39286 1.27969 1.36310 1.44476 1.96663 2.29917 2.57525 2.82287 3.03401 3.33346 3.39316 3.79209 3.91805 3.97496 4.00644 4.07542 4.13176 4.23158 4.41284 4.44807 4.52433 4.63013 4.65523 4.69051 4.79697 4.80476 4.83865 4.85335 4.92989 4.99408 5.11398 5.15692 5.20829 5.22568 5.27352 5.39613 5.49820 5.60081 5.80105 5.84518 6.18723 6.33455 6.68635 7.08654 7.28714 8.85636 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.010950 B = 0.004603 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.479480 B = 6081.530801 C = 7956.487655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.146 4.146 3 C -0.082 4.082 4 C -0.166 4.166 5 C 0.101 3.899 6 C -0.065 4.065 7 C 0.121 3.879 8 N -1.109 6.109 9 S 2.797 3.203 10 O -1.005 7.005 11 O -1.014 7.014 12 N -0.993 5.993 13 C 0.104 3.896 14 C 0.244 3.756 15 H 0.041 0.959 16 C -0.158 4.158 17 C -0.526 4.526 18 H 0.042 0.958 19 C 0.018 3.982 20 N -0.943 5.943 21 Si 0.938 3.062 22 H -0.253 1.253 23 H -0.297 1.297 24 H -0.252 1.252 25 N -0.505 5.505 26 C 0.081 3.919 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.161 0.839 31 H 0.159 0.841 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.428 0.572 37 H 0.034 0.966 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.039 0.961 42 H 0.069 0.931 43 H 0.267 0.733 44 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.960 13.595 -20.677 27.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.148 4.148 3 C -0.107 4.107 4 C -0.185 4.185 5 C -0.037 4.037 6 C -0.104 4.104 7 C -0.005 4.005 8 N -0.874 5.874 9 S 2.806 3.194 10 O -0.989 6.989 11 O -0.998 6.998 12 N -0.834 5.834 13 C -0.041 4.041 14 C 0.138 3.862 15 H 0.059 0.941 16 C -0.216 4.216 17 C -0.566 4.566 18 H 0.060 0.940 19 C -0.180 4.180 20 N -0.583 5.583 21 Si 0.764 3.236 22 H -0.178 1.178 23 H -0.225 1.225 24 H -0.177 1.177 25 N -0.214 5.214 26 C -0.076 4.076 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.178 0.822 31 H 0.176 0.824 32 H 0.122 0.878 33 H 0.127 0.873 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.265 0.735 37 H 0.052 0.948 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.087 0.913 41 H 0.058 0.942 42 H 0.088 0.912 43 H 0.076 0.924 44 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -11.044 13.163 -19.829 26.238 hybrid contribution -0.884 0.277 0.256 0.961 sum -11.928 13.441 -19.573 26.571 Atomic orbital electron populations 1.20769 0.88271 1.03968 1.03456 1.21278 0.99120 0.93940 1.00414 1.21876 0.93962 0.99230 0.95678 1.22292 0.95921 0.99128 1.01187 1.21305 0.96500 0.89182 0.96693 1.20692 0.88718 1.02352 0.98659 1.21278 0.78095 1.01516 0.99647 1.55599 1.15620 1.82561 1.33599 1.01201 0.72221 0.72739 0.73239 1.93535 1.32775 1.87441 1.85175 1.93542 1.80512 1.72361 1.53355 1.57373 1.40492 1.23319 1.62203 1.21355 0.94511 0.91857 0.96399 1.18813 0.83388 0.95500 0.88520 0.94095 1.22402 0.98109 1.01636 0.99447 1.21462 0.95181 1.31301 1.08629 0.93994 1.25733 1.03457 0.94376 0.94442 1.70029 1.36403 1.36808 1.15053 0.86033 0.80289 0.80475 0.76777 1.17796 1.22471 1.17661 1.67415 1.09311 1.32057 1.12647 1.22999 0.89496 0.98930 0.96222 0.89751 0.90762 0.90247 0.82180 0.82367 0.87787 0.87282 0.92520 0.90968 0.73483 0.94754 0.90040 0.89439 0.91302 0.94206 0.91240 0.92375 0.81825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.04 71.24 0.72 -0.32 16 2 C -0.15 -2.30 5.90 -19.77 -0.12 -2.42 16 3 C -0.08 -1.18 9.86 22.47 0.22 -0.96 16 4 C -0.17 -2.69 9.71 22.36 0.22 -2.47 16 5 C 0.10 2.11 6.17 42.56 0.26 2.38 16 6 C -0.07 -1.17 5.76 29.85 0.17 -1.00 16 7 C 0.12 3.11 6.11 86.38 0.53 3.63 16 8 N -1.11 -28.39 6.05 -187.48 -1.14 -29.53 16 9 S 2.80 104.89 6.09 -56.49 -0.34 104.55 16 10 O -1.01 -39.98 17.21 -128.00 -2.20 -42.18 16 11 O -1.01 -46.49 16.17 -128.00 -2.07 -48.56 16 12 N -0.99 -40.03 3.12 -520.43 -1.62 -41.65 16 13 C 0.10 3.62 9.53 127.77 1.22 4.83 16 14 C 0.24 11.41 2.21 44.24 0.10 11.50 16 15 H 0.04 2.05 5.97 -2.39 -0.01 2.04 16 16 C -0.16 -6.25 8.65 71.98 0.62 -5.63 16 17 C -0.53 -30.26 8.95 25.60 0.23 -30.03 16 18 H 0.04 2.67 7.89 -2.91 -0.02 2.65 16 19 C 0.02 1.07 5.45 84.65 0.46 1.53 16 20 N -0.94 -59.23 13.96 21.45 0.30 -58.93 16 21 Si 0.94 44.83 24.37 68.60 1.67 46.51 16 22 H -0.25 -11.05 6.87 99.48 0.68 -10.36 16 23 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 24 H -0.25 -11.47 6.53 99.48 0.65 -10.82 16 25 N -0.51 -12.29 9.89 -183.89 -1.82 -14.11 16 26 C 0.08 1.63 10.86 84.67 0.92 2.55 16 27 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.07 0.68 8.09 -2.39 -0.02 0.66 16 29 H 0.08 0.60 8.10 -2.39 -0.02 0.58 16 30 H 0.16 1.33 8.06 -2.91 -0.02 1.30 16 31 H 0.16 1.69 7.95 -2.91 -0.02 1.66 16 32 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.11 1.43 7.87 -2.39 -0.02 1.41 16 34 H 0.06 1.69 7.75 -2.39 -0.02 1.67 16 35 H 0.07 1.99 5.99 -2.39 -0.01 1.98 16 36 H 0.43 7.86 8.65 -96.75 -0.84 7.02 16 37 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.08 2.66 6.43 -2.39 -0.02 2.64 16 39 H 0.09 2.38 7.79 -2.39 -0.02 2.36 16 40 H 0.07 2.59 6.66 -2.39 -0.02 2.57 16 41 H 0.04 1.65 3.27 -2.38 -0.01 1.64 16 42 H 0.07 2.31 6.18 -2.39 -0.01 2.30 16 43 H 0.27 15.69 8.31 -92.70 -0.77 14.92 16 44 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -79.92 364.02 -1.57 -81.50 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 0.10 Total: 18.81 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: 5.55 Total: -16.40 kcal Atomic # 7 Polarization: -139.94 SS G_CDS: -4.28 Total: -144.22 kcal Atomic # 8 Polarization: -86.47 SS G_CDS: -4.27 Total: -90.75 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.67 Total: 46.51 kcal Atomic # 16 Polarization: 104.89 SS G_CDS: -0.34 Total: 104.55 kcal Total: -79.92 -1.57 -81.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416507463.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.685 kcal (2) G-P(sol) polarization free energy of solvation -79.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds