Wall clock time and date at job start Tue Mar 31 2020 14:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38678 * 120.41557 * 2 1 4 4 C 1.38623 * 118.41594 * 179.71257 * 3 2 1 5 5 C 1.38227 * 119.16290 * 0.54418 * 4 3 2 6 6 C 1.50704 * 119.61900 * 179.71571 * 5 4 3 7 7 N 1.46497 * 109.47108 * 94.72682 * 6 5 4 8 8 S 1.65608 * 119.99652 * 164.99992 * 7 6 5 9 9 O 1.42104 * 106.39724 * 178.54027 * 8 7 6 10 10 O 1.42097 * 106.40199 * 311.45938 * 8 7 6 11 11 N 1.65601 * 107.21642 * 65.00401 * 8 7 6 12 12 C 1.46507 * 119.99820 * 269.99450 * 11 8 7 13 13 C 1.46499 * 120.00284 * 90.00037 * 11 8 7 14 14 H 1.09002 * 109.46946 * 359.97438 * 13 11 8 15 15 C 1.53000 * 109.46744 * 239.99698 * 13 11 8 16 16 C 1.50696 * 109.47373 * 119.99814 * 13 11 8 17 17 H 1.08004 * 120.00015 * 359.97438 * 16 13 11 18 18 C 1.37869 * 120.00487 * 179.97438 * 16 13 11 19 19 N 1.31516 * 119.99838 * 359.97438 * 18 16 13 20 20 Si 1.86796 * 120.00399 * 179.97438 * 18 16 13 21 21 H 1.48495 * 109.47418 * 90.00023 * 20 18 16 22 22 H 1.48508 * 109.47119 * 209.99873 * 20 18 16 23 23 H 1.48501 * 109.47105 * 329.99804 * 20 18 16 24 24 N 1.31846 * 120.76289 * 359.43734 * 5 4 3 25 25 C 1.31888 * 121.72636 * 0.27627 * 24 5 4 26 26 C 1.50705 * 119.61656 * 179.97438 * 25 24 5 27 27 H 1.09005 * 109.47021 * 270.02561 * 1 2 3 28 28 H 1.09004 * 109.47175 * 30.02159 * 1 2 3 29 29 H 1.08994 * 109.46883 * 150.02351 * 1 2 3 30 30 H 1.08002 * 120.78958 * 359.97438 * 3 2 1 31 31 H 1.08004 * 120.42019 * 180.28121 * 4 3 2 32 32 H 1.09005 * 109.46813 * 334.73003 * 6 5 4 33 33 H 1.09000 * 109.47056 * 214.73370 * 6 5 4 34 34 H 0.96997 * 120.00126 * 344.99915 * 7 6 5 35 35 H 1.09004 * 109.46614 * 90.00144 * 12 11 8 36 36 H 1.08991 * 109.47229 * 210.00435 * 12 11 8 37 37 H 1.08997 * 109.46913 * 330.00633 * 12 11 8 38 38 H 1.09004 * 109.46767 * 180.02562 * 15 13 11 39 39 H 1.09002 * 109.47277 * 299.99648 * 15 13 11 40 40 H 1.08998 * 109.47422 * 60.00133 * 15 13 11 41 41 H 0.96997 * 120.00448 * 179.97438 * 19 18 16 42 42 H 1.08998 * 109.46989 * 90.00032 * 26 25 24 43 43 H 1.09004 * 109.47157 * 209.99805 * 26 25 24 44 44 H 1.08993 * 109.47110 * 330.00278 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5945 1.1476 0.0061 5 6 4.2256 -0.0822 0.0005 6 6 5.7312 -0.1467 0.0006 7 7 6.2139 -0.2878 1.3765 8 16 7.7776 -0.7528 1.6619 9 8 7.9419 -0.7628 3.0733 10 8 8.0135 -1.8904 0.8438 11 7 8.7594 0.4497 1.0853 12 6 9.2302 0.4091 -0.3015 13 6 9.1574 1.5539 1.9619 14 1 8.7134 1.4136 2.9475 15 6 8.6714 2.8774 1.3677 16 6 10.6590 1.5805 2.0862 17 1 11.2571 0.8478 1.5647 18 6 11.2694 2.5401 2.8656 19 7 10.5412 3.4326 3.5003 20 14 13.1307 2.5726 3.0202 21 1 13.7012 3.4326 1.9525 22 1 13.5076 3.1178 4.3492 23 1 13.6631 1.1932 2.8821 24 7 3.5255 -1.1995 0.0006 25 6 2.2067 -1.1915 0.0006 26 6 1.4540 -2.4972 0.0001 27 1 -0.3633 0.0005 1.0277 28 1 -0.3634 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5134 30 1 1.6889 2.1424 -0.0004 31 1 4.1735 2.0593 0.0109 32 1 6.1341 0.7683 -0.4338 33 1 6.0582 -1.0033 -0.5889 34 1 5.6177 -0.1089 2.1204 35 1 8.5198 0.9323 -0.9417 36 1 10.2046 0.8927 -0.3687 37 1 9.3161 -0.6279 -0.6258 38 1 8.9679 3.6990 2.0198 39 1 9.1151 3.0179 0.3821 40 1 7.5853 2.8582 1.2778 41 1 10.9705 4.1075 4.0490 42 1 1.2725 -2.8123 1.0277 43 1 0.5015 -2.3673 -0.5137 44 1 2.0436 -3.2562 -0.5139 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416550158.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:10 Heat of formation + Delta-G solvation = -46.555345 kcal Electronic energy + Delta-G solvation = -26251.499623 eV Core-core repulsion = 22523.550058 eV Total energy + Delta-G solvation = -3727.949565 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.66303 -36.66001 -36.16998 -35.79781 -35.18138 -33.41695 -33.07742 -32.56425 -29.09231 -28.66563 -28.14227 -25.49351 -25.16551 -24.67319 -22.64232 -21.39438 -20.78517 -18.81162 -17.44271 -16.95869 -16.87893 -16.58935 -15.97589 -15.53214 -15.12697 -14.98241 -14.68051 -14.23461 -13.91453 -13.42525 -13.36008 -13.26434 -13.17795 -12.95874 -12.82762 -12.59641 -12.43274 -12.26471 -12.00535 -11.79509 -11.73367 -11.44028 -11.32245 -11.27262 -11.20469 -10.90470 -10.80446 -10.45398 -10.22129 -10.05124 -9.88947 -9.56741 -9.35003 -9.24138 -8.89764 -8.44943 -7.96548 -6.06817 -4.13194 0.77349 1.07724 1.32069 3.28849 3.35943 3.37222 3.41114 3.72252 3.93957 4.18987 4.41077 4.43503 4.48504 4.64521 4.69261 5.02477 5.06016 5.16447 5.25024 5.28299 5.30171 5.36679 5.39472 5.48794 5.55844 5.64961 5.72580 5.85870 5.93691 6.00466 6.06972 6.12113 6.37444 6.52627 6.67632 6.78328 6.84753 7.03975 7.14921 7.50047 7.63915 7.80281 7.86135 8.05772 8.28403 8.88920 9.52466 10.98931 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.023762 B = 0.003057 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.064438 B = 9157.773310 C = 9724.918432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.139 4.139 3 C -0.075 4.075 4 C -0.156 4.156 5 C 0.121 3.879 6 C 0.175 3.825 7 N -1.126 6.126 8 S 2.781 3.219 9 O -0.973 6.973 10 O -0.994 6.994 11 N -0.988 5.988 12 C 0.094 3.906 13 C 0.268 3.732 14 H 0.059 0.941 15 C -0.146 4.146 16 C -0.520 4.520 17 H 0.063 0.937 18 C 0.063 3.937 19 N -0.891 5.891 20 Si 0.898 3.102 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.273 1.273 24 N -0.465 5.465 25 C 0.125 3.875 26 C -0.107 4.107 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.135 0.865 31 H 0.140 0.860 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.412 0.588 35 H 0.036 0.964 36 H 0.084 0.916 37 H 0.063 0.937 38 H 0.092 0.908 39 H 0.033 0.967 40 H 0.010 0.990 41 H 0.263 0.737 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.593 -3.497 -9.443 22.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.141 4.141 3 C -0.101 4.101 4 C -0.177 4.177 5 C -0.019 4.019 6 C 0.048 3.952 7 N -0.884 5.884 8 S 2.789 3.211 9 O -0.957 6.957 10 O -0.977 6.977 11 N -0.831 5.831 12 C -0.052 4.052 13 C 0.165 3.835 14 H 0.076 0.924 15 C -0.206 4.206 16 C -0.559 4.559 17 H 0.081 0.919 18 C -0.139 4.139 19 N -0.529 5.529 20 Si 0.726 3.274 21 H -0.207 1.207 22 H -0.211 1.211 23 H -0.198 1.198 24 N -0.175 5.175 25 C -0.014 4.014 26 C -0.164 4.164 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.153 0.847 31 H 0.158 0.842 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.244 0.756 35 H 0.055 0.945 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.110 0.890 39 H 0.052 0.948 40 H 0.029 0.971 41 H 0.073 0.927 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.705 -5.015 -9.068 21.384 hybrid contribution 0.207 1.566 0.281 1.604 sum -18.499 -3.450 -8.787 20.768 Atomic orbital electron populations 1.20807 0.90298 1.03122 1.02659 1.20744 0.97491 0.93692 1.02184 1.21483 0.93952 0.98104 0.96558 1.22053 0.95185 0.99208 1.01248 1.21151 0.96000 0.88458 0.96265 1.19991 0.88144 1.03071 0.83987 1.56193 1.31918 1.88137 1.12183 1.01924 0.72364 0.73569 0.73205 1.93616 1.84963 1.86950 1.30149 1.93529 1.84780 1.48567 1.70809 1.57679 1.62243 1.42748 1.20471 1.21342 1.01205 1.01274 0.81406 1.18726 0.95702 0.81050 0.88022 0.92378 1.22110 0.95666 1.02032 1.00784 1.21341 0.91066 1.14137 1.29406 0.91874 1.24904 0.98504 0.95327 0.95158 1.69858 1.35138 1.17085 1.30839 0.86495 0.85186 0.78335 0.77387 1.20671 1.21144 1.19821 1.67343 1.07515 1.31168 1.11458 1.21152 0.89504 0.95093 0.95628 1.20786 0.99201 0.93235 1.03194 0.90833 0.91408 0.90817 0.84690 0.84204 0.90121 0.88917 0.75589 0.94505 0.89775 0.91815 0.88980 0.94829 0.97122 0.92721 0.90341 0.90466 0.90366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 9.62 36.01 0.35 -0.31 16 2 C -0.14 -1.29 5.90 -104.48 -0.62 -1.90 16 3 C -0.08 -0.70 9.86 -39.28 -0.39 -1.08 16 4 C -0.16 -1.68 9.72 -39.44 -0.38 -2.06 16 5 C 0.12 1.55 6.18 -82.59 -0.51 1.04 16 6 C 0.18 2.37 6.55 -5.19 -0.03 2.34 16 7 N -1.13 -17.70 6.05 -11.65 -0.07 -17.77 16 8 S 2.78 55.58 6.14 -107.50 -0.66 54.92 16 9 O -0.97 -23.15 16.70 -57.17 -0.95 -24.10 16 10 O -0.99 -21.12 16.21 -57.17 -0.93 -22.05 16 11 N -0.99 -20.32 3.12 -115.85 -0.36 -20.68 16 12 C 0.09 1.64 9.66 59.85 0.58 2.22 16 13 C 0.27 6.50 2.62 -69.08 -0.18 6.32 16 14 H 0.06 1.57 6.91 -51.93 -0.36 1.21 16 15 C -0.15 -3.25 8.97 37.16 0.33 -2.92 16 16 C -0.52 -13.93 7.99 -34.45 -0.28 -14.20 16 17 H 0.06 1.68 7.33 -52.48 -0.38 1.30 16 18 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 19 N -0.89 -24.71 11.32 55.43 0.63 -24.08 16 20 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 24 N -0.47 -6.33 10.19 -5.74 -0.06 -6.39 16 25 C 0.12 1.38 6.78 -82.59 -0.56 0.82 16 26 C -0.11 -0.86 9.77 36.01 0.35 -0.51 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.33 8.10 -51.93 -0.42 -0.09 16 29 H 0.07 0.36 5.96 -51.93 -0.31 0.05 16 30 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 31 H 0.14 1.29 8.06 -52.48 -0.42 0.86 16 32 H 0.08 0.94 8.04 -51.93 -0.42 0.53 16 33 H 0.09 1.30 7.75 -51.93 -0.40 0.90 16 34 H 0.41 6.02 8.64 -34.48 -0.30 5.72 16 35 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 1.54 7.02 -51.93 -0.36 1.17 16 37 H 0.06 1.05 7.02 -51.93 -0.36 0.69 16 38 H 0.09 2.29 6.07 -51.93 -0.32 1.97 16 39 H 0.03 0.70 7.67 -51.93 -0.40 0.30 16 40 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 41 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 42 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.08 0.43 5.94 -51.93 -0.31 0.12 16 44 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 371.09 15.07 5.59 5.59 Total: -1.00 -33.74 371.09 -9.70 -43.44 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -6.44 Total: 3.69 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -1.43 Total: -8.64 kcal Atomic # 7 Polarization: -69.07 SS G_CDS: 0.14 Total: -68.93 kcal Atomic # 8 Polarization: -44.27 SS G_CDS: -1.88 Total: -46.15 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 55.58 SS G_CDS: -0.66 Total: 54.92 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.74 -9.70 -43.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416550158.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.117 kcal (2) G-P(sol) polarization free energy of solvation -33.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds