Wall clock time and date at job start Tue Mar 31 2020 14:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38678 * 120.41557 * 2 1 4 4 C 1.38623 * 118.41594 * 179.71257 * 3 2 1 5 5 C 1.38227 * 119.16290 * 0.54418 * 4 3 2 6 6 C 1.50704 * 119.61900 * 179.71571 * 5 4 3 7 7 N 1.46497 * 109.47108 * 94.72682 * 6 5 4 8 8 S 1.65608 * 119.99652 * 164.99992 * 7 6 5 9 9 O 1.42104 * 106.39724 * 178.54027 * 8 7 6 10 10 O 1.42097 * 106.40199 * 311.45938 * 8 7 6 11 11 N 1.65601 * 107.21642 * 65.00401 * 8 7 6 12 12 C 1.46507 * 119.99820 * 269.99450 * 11 8 7 13 13 C 1.46499 * 120.00284 * 90.00037 * 11 8 7 14 14 H 1.09002 * 109.46946 * 359.97438 * 13 11 8 15 15 C 1.53000 * 109.46744 * 239.99698 * 13 11 8 16 16 C 1.50696 * 109.47373 * 119.99814 * 13 11 8 17 17 H 1.08004 * 120.00015 * 359.97438 * 16 13 11 18 18 C 1.37869 * 120.00487 * 179.97438 * 16 13 11 19 19 N 1.31516 * 119.99838 * 359.97438 * 18 16 13 20 20 Si 1.86796 * 120.00399 * 179.97438 * 18 16 13 21 21 H 1.48495 * 109.47418 * 90.00023 * 20 18 16 22 22 H 1.48508 * 109.47119 * 209.99873 * 20 18 16 23 23 H 1.48501 * 109.47105 * 329.99804 * 20 18 16 24 24 N 1.31846 * 120.76289 * 359.43734 * 5 4 3 25 25 C 1.31888 * 121.72636 * 0.27627 * 24 5 4 26 26 C 1.50705 * 119.61656 * 179.97438 * 25 24 5 27 27 H 1.09005 * 109.47021 * 270.02561 * 1 2 3 28 28 H 1.09004 * 109.47175 * 30.02159 * 1 2 3 29 29 H 1.08994 * 109.46883 * 150.02351 * 1 2 3 30 30 H 1.08002 * 120.78958 * 359.97438 * 3 2 1 31 31 H 1.08004 * 120.42019 * 180.28121 * 4 3 2 32 32 H 1.09005 * 109.46813 * 334.73003 * 6 5 4 33 33 H 1.09000 * 109.47056 * 214.73370 * 6 5 4 34 34 H 0.96997 * 120.00126 * 344.99915 * 7 6 5 35 35 H 1.09004 * 109.46614 * 90.00144 * 12 11 8 36 36 H 1.08991 * 109.47229 * 210.00435 * 12 11 8 37 37 H 1.08997 * 109.46913 * 330.00633 * 12 11 8 38 38 H 1.09004 * 109.46767 * 180.02562 * 15 13 11 39 39 H 1.09002 * 109.47277 * 299.99648 * 15 13 11 40 40 H 1.08998 * 109.47422 * 60.00133 * 15 13 11 41 41 H 0.96997 * 120.00448 * 179.97438 * 19 18 16 42 42 H 1.08998 * 109.46989 * 90.00032 * 26 25 24 43 43 H 1.09004 * 109.47157 * 209.99805 * 26 25 24 44 44 H 1.08993 * 109.47110 * 330.00278 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5945 1.1476 0.0061 5 6 4.2256 -0.0822 0.0005 6 6 5.7312 -0.1467 0.0006 7 7 6.2139 -0.2878 1.3765 8 16 7.7776 -0.7528 1.6619 9 8 7.9419 -0.7628 3.0733 10 8 8.0135 -1.8904 0.8438 11 7 8.7594 0.4497 1.0853 12 6 9.2302 0.4091 -0.3015 13 6 9.1574 1.5539 1.9619 14 1 8.7134 1.4136 2.9475 15 6 8.6714 2.8774 1.3677 16 6 10.6590 1.5805 2.0862 17 1 11.2571 0.8478 1.5647 18 6 11.2694 2.5401 2.8656 19 7 10.5412 3.4326 3.5003 20 14 13.1307 2.5726 3.0202 21 1 13.7012 3.4326 1.9525 22 1 13.5076 3.1178 4.3492 23 1 13.6631 1.1932 2.8821 24 7 3.5255 -1.1995 0.0006 25 6 2.2067 -1.1915 0.0006 26 6 1.4540 -2.4972 0.0001 27 1 -0.3633 0.0005 1.0277 28 1 -0.3634 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5134 30 1 1.6889 2.1424 -0.0004 31 1 4.1735 2.0593 0.0109 32 1 6.1341 0.7683 -0.4338 33 1 6.0582 -1.0033 -0.5889 34 1 5.6177 -0.1089 2.1204 35 1 8.5198 0.9323 -0.9417 36 1 10.2046 0.8927 -0.3687 37 1 9.3161 -0.6279 -0.6258 38 1 8.9679 3.6990 2.0198 39 1 9.1151 3.0179 0.3821 40 1 7.5853 2.8582 1.2778 41 1 10.9705 4.1075 4.0490 42 1 1.2725 -2.8123 1.0277 43 1 0.5015 -2.3673 -0.5137 44 1 2.0436 -3.2562 -0.5139 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416550158.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:09 Heat of formation + Delta-G solvation = -70.993112 kcal Electronic energy + Delta-G solvation = -26252.559325 eV Core-core repulsion = 22523.550058 eV Total energy + Delta-G solvation = -3729.009266 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.44615 -38.36240 -37.88789 -36.91647 -36.85806 -34.51507 -34.26457 -33.86826 -30.89901 -29.29923 -29.04067 -27.21865 -26.97706 -25.51114 -23.39181 -22.62983 -22.17610 -20.34348 -18.94428 -18.59444 -18.33582 -17.72738 -17.37543 -16.95031 -16.40750 -15.99918 -15.73234 -15.40876 -15.12695 -14.97408 -14.75851 -14.31953 -14.16415 -13.80468 -13.77412 -13.67304 -13.54101 -13.47318 -13.22543 -13.16781 -13.12708 -13.00191 -12.99337 -12.78373 -12.68084 -12.60536 -12.23664 -12.11200 -12.08380 -11.90348 -11.15053 -10.66608 -10.58307 -10.48256 -10.38551 -9.71505 -9.59769 -8.10873 -6.23978 -0.42311 0.11444 0.33995 1.42580 1.44993 1.54251 2.03741 2.43617 2.57274 2.81459 3.12527 3.17671 3.44594 3.69317 3.84722 4.01530 4.03764 4.11795 4.19582 4.42773 4.57761 4.66073 4.70094 4.74809 4.76602 4.79130 4.80252 4.84324 4.91902 5.04516 5.07667 5.13111 5.18601 5.21355 5.28247 5.29280 5.38753 5.62954 5.69234 5.81827 5.88561 5.98527 6.18869 6.32079 6.83623 7.05148 7.44719 8.93326 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.023762 B = 0.003057 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.064438 B = 9157.773310 C = 9724.918432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.134 4.134 3 C -0.078 4.078 4 C -0.159 4.159 5 C 0.096 3.904 6 C 0.171 3.829 7 N -1.114 6.114 8 S 2.799 3.201 9 O -1.017 7.017 10 O -1.009 7.009 11 N -0.993 5.993 12 C 0.088 3.912 13 C 0.273 3.727 14 H 0.023 0.977 15 C -0.133 4.133 16 C -0.539 4.539 17 H 0.057 0.943 18 C 0.018 3.982 19 N -0.914 5.914 20 Si 0.955 3.045 21 H -0.268 1.268 22 H -0.285 1.285 23 H -0.276 1.276 24 N -0.500 5.500 25 C 0.102 3.898 26 C -0.106 4.106 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.165 0.835 31 H 0.154 0.846 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.417 0.583 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.043 0.957 40 H 0.038 0.962 41 H 0.264 0.736 42 H 0.083 0.917 43 H 0.104 0.896 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.375 -2.657 -10.837 24.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.136 4.136 3 C -0.104 4.104 4 C -0.179 4.179 5 C -0.043 4.043 6 C 0.045 3.955 7 N -0.875 5.875 8 S 2.808 3.192 9 O -1.001 7.001 10 O -0.992 6.992 11 N -0.835 5.835 12 C -0.057 4.057 13 C 0.169 3.831 14 H 0.041 0.959 15 C -0.193 4.193 16 C -0.578 4.578 17 H 0.075 0.925 18 C -0.182 4.182 19 N -0.553 5.553 20 Si 0.781 3.219 21 H -0.194 1.194 22 H -0.210 1.210 23 H -0.201 1.201 24 N -0.211 5.211 25 C -0.036 4.036 26 C -0.162 4.162 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.182 0.818 31 H 0.172 0.828 32 H 0.120 0.880 33 H 0.102 0.898 34 H 0.251 0.749 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.073 0.927 42 H 0.101 0.899 43 H 0.122 0.878 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -20.484 -4.182 -10.485 23.388 hybrid contribution 0.621 1.255 0.673 1.553 sum -19.863 -2.927 -9.811 22.347 Atomic orbital electron populations 1.20896 0.87707 1.04534 1.03598 1.21154 0.99343 0.93017 1.00130 1.21884 0.93514 0.99441 0.95548 1.22241 0.96179 0.98815 1.00671 1.21049 0.95351 0.89334 0.98521 1.20180 0.89402 1.03704 0.82174 1.55769 1.30175 1.87805 1.13763 1.01131 0.73013 0.73245 0.71835 1.93550 1.86034 1.87511 1.33002 1.93503 1.85509 1.49350 1.70834 1.57516 1.63081 1.41630 1.21314 1.21552 1.01716 1.02246 0.80202 1.18416 0.94256 0.82995 0.87471 0.95886 1.21900 0.97480 0.99582 1.00343 1.21669 0.92671 1.13998 1.29478 0.92451 1.25618 1.02415 0.95165 0.94993 1.69973 1.36546 1.17498 1.31256 0.85609 0.80590 0.78174 0.77565 1.19365 1.21026 1.20086 1.67274 1.09083 1.32061 1.12677 1.21667 0.89033 0.96988 0.95908 1.20863 0.99898 0.91766 1.03715 0.89927 0.89875 0.89597 0.81788 0.82813 0.87950 0.89848 0.74854 0.90900 0.90773 0.91107 0.91639 0.93752 0.94317 0.92659 0.89884 0.87794 0.91444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 9.62 71.24 0.69 -0.24 16 2 C -0.13 -2.15 5.90 -19.77 -0.12 -2.27 16 3 C -0.08 -1.24 9.86 22.47 0.22 -1.01 16 4 C -0.16 -3.09 9.72 22.36 0.22 -2.88 16 5 C 0.10 2.39 6.18 42.56 0.26 2.65 16 6 C 0.17 4.50 6.55 85.64 0.56 5.06 16 7 N -1.11 -34.78 6.05 -190.78 -1.15 -35.93 16 8 S 2.80 113.08 6.14 -56.49 -0.35 112.73 16 9 O -1.02 -49.95 16.70 -128.00 -2.14 -52.09 16 10 O -1.01 -43.12 16.21 -128.00 -2.07 -45.20 16 11 N -0.99 -40.61 3.12 -520.45 -1.62 -42.23 16 12 C 0.09 2.97 9.66 127.77 1.23 4.20 16 13 C 0.27 13.34 2.62 44.24 0.12 13.46 16 14 H 0.02 1.30 6.91 -2.39 -0.02 1.28 16 15 C -0.13 -5.83 8.97 71.98 0.65 -5.18 16 16 C -0.54 -29.14 7.99 25.60 0.20 -28.94 16 17 H 0.06 3.09 7.33 -2.91 -0.02 3.06 16 18 C 0.02 0.97 5.30 84.65 0.45 1.42 16 19 N -0.91 -51.22 11.32 21.44 0.24 -50.97 16 20 Si 0.95 43.37 29.54 68.60 2.03 45.39 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 24 N -0.50 -13.44 10.19 -172.08 -1.75 -15.19 16 25 C 0.10 2.13 6.78 42.54 0.29 2.42 16 26 C -0.11 -1.56 9.77 71.24 0.70 -0.86 16 27 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 28 H 0.08 0.48 8.10 -2.39 -0.02 0.46 16 29 H 0.09 0.52 5.96 -2.39 -0.01 0.50 16 30 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 31 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 32 H 0.10 2.19 8.04 -2.38 -0.02 2.17 16 33 H 0.08 2.32 7.75 -2.39 -0.02 2.30 16 34 H 0.42 12.24 8.64 -96.74 -0.84 11.40 16 35 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.07 2.65 7.02 -2.39 -0.02 2.63 16 37 H 0.07 2.27 7.02 -2.39 -0.02 2.25 16 38 H 0.06 3.24 6.07 -2.38 -0.01 3.23 16 39 H 0.04 1.79 7.67 -2.39 -0.02 1.77 16 40 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 42 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.10 0.90 5.94 -2.39 -0.01 0.89 16 44 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -73.96 371.09 -1.18 -75.14 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: 0.18 Total: 20.51 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: 5.46 Total: -12.16 kcal Atomic # 7 Polarization: -140.04 SS G_CDS: -4.29 Total: -144.33 kcal Atomic # 8 Polarization: -93.08 SS G_CDS: -4.21 Total: -97.29 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: 113.08 SS G_CDS: -0.35 Total: 112.73 kcal Total: -73.96 -1.18 -75.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416550158.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.145 kcal (2) G-P(sol) polarization free energy of solvation -73.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds