Wall clock time and date at job start Tue Mar 31 2020 14:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38673 * 120.41994 * 2 1 4 4 C 1.38631 * 118.42268 * 179.71384 * 3 2 1 5 5 C 1.38230 * 119.15669 * 0.53337 * 4 3 2 6 6 C 1.50700 * 119.61800 * 179.71613 * 5 4 3 7 7 N 1.46499 * 109.46995 * 94.73369 * 6 5 4 8 8 S 1.65597 * 119.99926 * 165.27893 * 7 6 5 9 9 O 1.42096 * 106.40195 * 178.26439 * 8 7 6 10 10 O 1.42108 * 106.40105 * 311.18495 * 8 7 6 11 11 N 1.65605 * 107.21939 * 64.71969 * 8 7 6 12 12 C 1.46505 * 119.99527 * 90.00151 * 11 8 7 13 13 C 1.46494 * 120.00164 * 270.00117 * 11 8 7 14 14 H 1.09000 * 109.47375 * 359.97438 * 13 11 8 15 15 C 1.53002 * 109.47135 * 120.00275 * 13 11 8 16 16 C 1.50704 * 109.46994 * 240.00053 * 13 11 8 17 17 H 1.08003 * 119.99999 * 0.02562 * 16 13 11 18 18 C 1.37877 * 119.99981 * 180.02562 * 16 13 11 19 19 N 1.31521 * 119.99728 * 0.02562 * 18 16 13 20 20 Si 1.86798 * 120.00194 * 179.97438 * 18 16 13 21 21 H 1.48502 * 109.46866 * 89.99854 * 20 18 16 22 22 H 1.48501 * 109.47570 * 210.00035 * 20 18 16 23 23 H 1.48503 * 109.47035 * 330.00323 * 20 18 16 24 24 N 1.31852 * 120.76232 * 359.45158 * 5 4 3 25 25 C 1.31883 * 121.73077 * 0.26285 * 24 5 4 26 26 C 1.50700 * 119.62017 * 180.02562 * 25 24 5 27 27 H 1.08998 * 109.46933 * 270.03084 * 1 2 3 28 28 H 1.09002 * 109.46765 * 30.02664 * 1 2 3 29 29 H 1.09001 * 109.46804 * 150.02665 * 1 2 3 30 30 H 1.08003 * 120.78982 * 359.97438 * 3 2 1 31 31 H 1.07998 * 120.42194 * 180.27814 * 4 3 2 32 32 H 1.09007 * 109.46980 * 334.73388 * 6 5 4 33 33 H 1.08995 * 109.47206 * 214.73571 * 6 5 4 34 34 H 0.97001 * 119.99790 * 344.99681 * 7 6 5 35 35 H 1.09006 * 109.46779 * 90.00114 * 12 11 8 36 36 H 1.09000 * 109.47139 * 209.99765 * 12 11 8 37 37 H 1.09001 * 109.47179 * 330.00258 * 12 11 8 38 38 H 1.09002 * 109.46860 * 300.00138 * 15 13 11 39 39 H 1.09000 * 109.47334 * 59.99552 * 15 13 11 40 40 H 1.08999 * 109.47308 * 179.97438 * 15 13 11 41 41 H 0.97005 * 119.99396 * 180.02562 * 19 18 16 42 42 H 1.08995 * 109.46870 * 90.00080 * 26 25 24 43 43 H 1.09000 * 109.47158 * 210.00153 * 26 25 24 44 44 H 1.08997 * 109.46937 * 330.00179 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1958 0.0000 4 6 3.5946 1.1475 0.0061 5 6 4.2257 -0.0823 0.0007 6 6 5.7313 -0.1469 0.0007 7 7 6.2139 -0.2880 1.3767 8 16 7.7794 -0.7462 1.6621 9 8 7.9450 -0.7514 3.0734 10 8 8.0189 -1.8856 0.8472 11 7 8.7565 0.4580 1.0809 12 6 9.1511 1.5663 1.9539 13 6 9.2261 0.4149 -0.3060 14 1 8.8331 -0.4763 -0.7952 15 6 8.7395 1.6613 -1.0481 16 6 10.7325 0.3749 -0.3253 17 1 11.2847 0.3805 0.6029 18 6 11.4056 0.3311 -1.5278 19 7 10.7330 0.3247 -2.6580 20 14 13.2728 0.2822 -1.5517 21 1 13.7313 -1.1301 -1.5273 22 1 13.7696 0.9427 -2.7855 23 1 13.8019 0.9949 -0.3612 24 7 3.5255 -1.1996 0.0007 25 6 2.2067 -1.1916 0.0007 26 6 1.4539 -2.4972 0.0013 27 1 -0.3633 0.0006 1.0277 28 1 -0.3633 0.8898 -0.5143 29 1 -0.3633 -0.8902 -0.5134 30 1 1.6890 2.1424 -0.0004 31 1 4.1736 2.0592 0.0108 32 1 6.1342 0.7680 -0.4337 33 1 6.0582 -1.0036 -0.5886 34 1 5.6177 -0.1089 2.1206 35 1 10.0783 1.3118 2.4676 36 1 9.3024 2.4644 1.3551 37 1 8.3666 1.7473 2.6887 38 1 7.6500 1.6902 -1.0342 39 1 9.1329 2.5523 -0.5588 40 1 9.0893 1.6295 -2.0800 41 1 11.2067 0.2935 -3.5040 42 1 1.2725 -2.8114 1.0291 43 1 0.5015 -2.3677 -0.5126 44 1 2.0435 -3.2567 -0.5121 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416550161.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:15 Heat of formation + Delta-G solvation = -45.001947 kcal Electronic energy + Delta-G solvation = -26413.058774 eV Core-core repulsion = 22685.176569 eV Total energy + Delta-G solvation = -3727.882205 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.61151 -36.68609 -36.16991 -35.75400 -35.16413 -33.37809 -33.03753 -32.56167 -29.10435 -28.62311 -28.08909 -25.58238 -25.15246 -24.61631 -22.59443 -21.33186 -20.76884 -18.83388 -17.45791 -16.94710 -16.82239 -16.34340 -16.15327 -15.50517 -15.03160 -14.90835 -14.71515 -14.21650 -13.89571 -13.48445 -13.36117 -13.17752 -13.12976 -12.92997 -12.80652 -12.71516 -12.35073 -12.21390 -12.00107 -11.72993 -11.68838 -11.40481 -11.36088 -11.23736 -11.18504 -10.94350 -10.80455 -10.43968 -10.26755 -10.00696 -9.84779 -9.49993 -9.28352 -9.24616 -8.84950 -8.43801 -7.96659 -6.06266 -4.12307 0.81588 1.12000 1.32306 3.30676 3.37143 3.39355 3.42321 3.74727 4.01155 4.19743 4.41667 4.48478 4.52668 4.68624 4.73763 5.07635 5.08806 5.19910 5.25219 5.31718 5.36920 5.41623 5.44459 5.52986 5.63235 5.65511 5.73746 5.92936 5.98684 6.03925 6.12216 6.16716 6.39930 6.57006 6.63721 6.76126 6.79124 6.99117 7.15868 7.49550 7.64205 7.79990 7.92942 8.04632 8.28537 8.89871 9.53462 10.99472 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.019043 B = 0.003285 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.971842 B = 8522.438965 C = 8965.534187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.141 4.141 3 C -0.076 4.076 4 C -0.158 4.158 5 C 0.124 3.876 6 C 0.170 3.830 7 N -1.127 6.127 8 S 2.780 3.220 9 O -0.996 6.996 10 O -0.970 6.970 11 N -0.991 5.991 12 C 0.111 3.889 13 C 0.265 3.735 14 H 0.060 0.940 15 C -0.150 4.150 16 C -0.519 4.519 17 H 0.062 0.938 18 C 0.063 3.937 19 N -0.890 5.890 20 Si 0.898 3.102 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 N -0.464 5.464 25 C 0.125 3.875 26 C -0.107 4.107 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.134 0.866 31 H 0.139 0.861 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.408 0.592 35 H 0.048 0.952 36 H 0.071 0.929 37 H 0.048 0.952 38 H 0.011 0.989 39 H 0.034 0.966 40 H 0.094 0.906 41 H 0.263 0.737 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.171 3.617 4.288 20.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.143 4.143 3 C -0.102 4.102 4 C -0.179 4.179 5 C -0.015 4.015 6 C 0.043 3.957 7 N -0.885 5.885 8 S 2.789 3.211 9 O -0.980 6.980 10 O -0.953 6.953 11 N -0.834 5.834 12 C -0.035 4.035 13 C 0.162 3.838 14 H 0.078 0.922 15 C -0.210 4.210 16 C -0.558 4.558 17 H 0.081 0.919 18 C -0.139 4.139 19 N -0.529 5.529 20 Si 0.726 3.274 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.199 1.199 24 N -0.174 5.174 25 C -0.013 4.013 26 C -0.164 4.164 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.152 0.848 31 H 0.157 0.843 32 H 0.105 0.895 33 H 0.115 0.885 34 H 0.240 0.760 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.067 0.933 38 H 0.030 0.970 39 H 0.053 0.947 40 H 0.112 0.888 41 H 0.073 0.927 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -19.267 1.944 4.338 19.845 hybrid contribution 0.257 1.397 0.040 1.421 sum -19.011 3.341 4.378 19.792 Atomic orbital electron populations 1.20799 0.90339 1.03142 1.02545 1.20735 0.97447 0.93707 1.02393 1.21462 0.93933 0.98044 0.96715 1.22034 0.95127 0.99161 1.01542 1.21193 0.96068 0.88397 0.95850 1.20139 0.87866 1.04090 0.83592 1.56168 1.31640 1.88367 1.12320 1.01964 0.72347 0.74129 0.72660 1.93546 1.85619 1.87525 1.31299 1.93606 1.84098 1.47530 1.70084 1.57722 1.62613 1.40005 1.23041 1.21130 0.99178 0.90560 0.92680 1.18763 0.95086 0.95703 0.74205 0.92220 1.22189 0.95702 0.98628 1.04437 1.21327 0.90720 1.50981 0.92814 0.91949 1.24901 0.98646 0.94879 0.95449 1.69854 1.35337 1.50336 0.97379 0.86501 0.85236 0.78292 0.77395 1.20560 1.21216 1.19912 1.67368 1.07465 1.31229 1.11326 1.21169 0.89535 0.95088 0.95512 1.20788 0.99230 0.93311 1.03114 0.90934 0.91441 0.90805 0.84775 0.84313 0.89453 0.88488 0.75994 0.93299 0.90989 0.93328 0.96986 0.94661 0.88757 0.92717 0.90402 0.90475 0.90275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 9.62 36.01 0.35 -0.34 16 2 C -0.14 -1.36 5.90 -104.48 -0.62 -1.97 16 3 C -0.08 -0.72 9.86 -39.28 -0.39 -1.11 16 4 C -0.16 -1.75 9.72 -39.44 -0.38 -2.14 16 5 C 0.12 1.71 6.18 -82.59 -0.51 1.20 16 6 C 0.17 2.59 6.55 -5.19 -0.03 2.56 16 7 N -1.13 -17.68 6.05 -11.66 -0.07 -17.75 16 8 S 2.78 55.66 6.09 -107.50 -0.65 55.01 16 9 O -1.00 -21.16 17.21 -57.17 -0.98 -22.14 16 10 O -0.97 -23.23 16.19 -57.17 -0.93 -24.15 16 11 N -0.99 -20.37 3.12 -115.85 -0.36 -20.73 16 12 C 0.11 1.96 9.53 59.85 0.57 2.53 16 13 C 0.27 6.35 2.62 -69.08 -0.18 6.17 16 14 H 0.06 1.59 6.91 -51.93 -0.36 1.23 16 15 C -0.15 -3.25 8.95 37.16 0.33 -2.92 16 16 C -0.52 -13.89 8.37 -34.44 -0.29 -14.18 16 17 H 0.06 1.67 7.65 -52.48 -0.40 1.27 16 18 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 19 N -0.89 -24.51 11.32 55.43 0.63 -23.88 16 20 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 24 N -0.46 -6.77 10.19 -5.74 -0.06 -6.82 16 25 C 0.13 1.47 6.78 -82.59 -0.56 0.91 16 26 C -0.11 -0.93 9.77 36.01 0.35 -0.58 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.35 8.10 -51.93 -0.42 -0.07 16 29 H 0.07 0.39 5.96 -51.93 -0.31 0.08 16 30 H 0.13 0.90 8.06 -52.48 -0.42 0.47 16 31 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.09 1.24 6.06 -51.93 -0.31 0.93 16 33 H 0.10 1.67 7.76 -51.93 -0.40 1.27 16 34 H 0.41 5.52 8.64 -34.47 -0.30 5.23 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 1.21 6.43 -51.93 -0.33 0.88 16 37 H 0.05 0.72 7.79 -51.93 -0.40 0.32 16 38 H 0.01 0.21 6.16 -51.93 -0.32 -0.11 16 39 H 0.03 0.72 6.66 -51.93 -0.35 0.37 16 40 H 0.09 2.29 6.07 -51.93 -0.32 1.97 16 41 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.08 0.48 5.94 -51.93 -0.31 0.17 16 44 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 367.29 15.07 5.53 5.53 Total: -1.00 -33.56 367.29 -9.57 -43.14 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -6.20 Total: 3.93 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -1.45 Total: -8.25 kcal Atomic # 7 Polarization: -69.33 SS G_CDS: 0.14 Total: -69.19 kcal Atomic # 8 Polarization: -44.38 SS G_CDS: -1.91 Total: -46.29 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 55.66 SS G_CDS: -0.65 Total: 55.01 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.56 -9.57 -43.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416550161.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.866 kcal (2) G-P(sol) polarization free energy of solvation -33.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds